Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

342080 .. 344516

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCAACTGGAGTGCTCTCCATCACAGAATCCAATAATGGCTCTTCTCCAGTCTGCCGCTCTCCCTCCTCTTCGCTCCATTTGCTGCTCCACTTCGTCCAAACACCCGATCACTTACCCTTCTTCCATTTCAAGCTCAGGCTCAAGTTCAAGCTCAAGCTCAAGCTGGGCTCCCAACAAGAAGAATGCTGCCCTTGTGGGCTTGGTGAGGCGGAAGACTGCCTTTGCGGTCAGGTCTAGCTTGGACACTGCCGCCACCGTCGGCCAGGTCACCGAGGTCGACAAGGACACCTTCTGGCCGATCGTCAACGCCGCCGGCGACAAGACCATCGTCCTTGATATGTACACCCAATGGTGTGGTCCTTGCAAGATTATAGCTCCAAAATATGTAGAATTGTCACAGAAATATGACGATGTCATATTTTTGAAGCTTGATTGTAACCAAGAAAATAAGCCATTGGCAAAGGAGCTTGGAATAAGGGTGGTACCGACTTTCAAGATTTTGAAGCATGACAAGGTTGTAAAAGAAGTGACGGGGGCCAAATTTGATGATTTAGTTGCTGCCATAGAGACTGTTAGAACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

195

Amino Acids

21.15

Weight (kDa)

8.87

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	90 - 190	4.3e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	5 cut(s)	57, 211, 227, 252, 312
AcoI	YGGCCR	2 cut(s)	262, 296
AcsI	RAATTY	1 cut(s)	542
AfaI	GTAC	2 cut(s)	344, 486
AgsI	TTSAA	5 cut(s)	132, 150, 427, 496, 505
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	9 cut(s)	135, 153, 159, 165, 240, 377, 430, 469, 585
AluI	AGCT	9 cut(s)	135, 153, 159, 165, 240, 377, 430, 469, 585
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	563
AoxI	GGCC	3 cut(s)	262, 296, 537
ApeKI	GCWGC	3 cut(s)	84, 188, 560
ApoI	RAATTY	1 cut(s)	542
Asp718I	GGTACC	1 cut(s)	484
AspS9I	GGNCC	2 cut(s)	359, 537
AsuHPI	GGTGA	2 cut(s)	217, 262
AvaII	GGWCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	71, 175, 547
BccI	CCATC	2 cut(s)	28, 335
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	6 cut(s)	57, 85, 189, 252, 312, 561
BlsI	GCNGC	6 cut(s)	58, 86, 190, 253, 313, 562
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	359, 537
BmiI	GGNNCC	3 cut(s)	171, 486, 538
BmrFI	CCNGG	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	2 cut(s)	29, 32
Bpu10I	CCTNAGC	1 cut(s)	136
BpuEI	CTTGAG	3 cut(s)	127, 139, 145
BsaJI	CCNNGG	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	12, 49
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	12, 49
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	71, 175, 547
BseYI	CCCAGC	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	264, 298, 539
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	264, 298, 539
Bsp1286I	GDGCHC	2 cut(s)	17, 172
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	108, 300
BspACI	CCGC	5 cut(s)	57, 211, 227, 252, 312
BspANI	GGCC	3 cut(s)	264, 298, 539
BspCNI	CTCAG	1 cut(s)	149
BspLI	GGNNCC	3 cut(s)	171, 486, 538
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	12, 49
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	108, 300
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	259, 574
Bst6I	CTCTTC	2 cut(s)	48, 75
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	136
BstEII	GGTNACC	1 cut(s)	268
BstKTI	GATC	2 cut(s)	111, 303
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	2 cut(s)	108, 300
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	266
BstPAI	GACNNNNGTC	1 cut(s)	329
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	71, 175, 547
BstV2I	GAAGAC	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	356
BsuRI	GGCC	3 cut(s)	264, 298, 539
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	359, 537
Csp6I	GTAC	2 cut(s)	343, 485
CviAII	CATG	1 cut(s)	509
CviQI	GTAC	2 cut(s)	343, 485
DdeI	CTNAG	1 cut(s)	136
DpnI	GATC	2 cut(s)	110, 302
DpnII	GATC	2 cut(s)	108, 300
EaeI	YGGCCR	2 cut(s)	262, 296
Eam1104I	CTCTTC	2 cut(s)	48, 75
EarI	CTCTTC	2 cut(s)	48, 75
EciI	GGCGGA	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	1 cut(s)	512
FaiI	YATR	7 cut(s)	341, 374, 387, 408, 419, 510, 566
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 275, 307
FatI	CATG	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	6 cut(s)	57, 85, 189, 252, 312, 561
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	6 cut(s)	57, 85, 189, 252, 312, 561
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	6 cut(s)	57, 85, 189, 252, 312, 561
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	29, 32
HaeIII	GGCC	3 cut(s)	264, 298, 539
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	1 cut(s)	512
HincII	GTYRAC	2 cut(s)	280, 307
HindII	GTYRAC	2 cut(s)	280, 307
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	217, 262
Hpy166II	GTNNAC	3 cut(s)	280, 307, 345
Hpy188III	TCNNGA	1 cut(s)	496
Hpy8I	GTNNAC	3 cut(s)	280, 307, 345
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	129, 301
HpyCH4III	ACNGT	2 cut(s)	259, 574
HpyCH4V	TGCA	2 cut(s)	4, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	512
KpnI	GGTACC	1 cut(s)	488
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	108, 300
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	5 cut(s)	80, 92, 175, 382, 466
LpnPI	CCDG	8 cut(s)	62, 123, 151, 217, 251, 278, 280, 328
Lsp1109I	GCAGC	3 cut(s)	71, 175, 547
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	4 cut(s)	268, 396, 437, 529
MalI	GATC	2 cut(s)	110, 302
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	108, 300
MboII	GAAGA	5 cut(s)	35, 62, 114, 193, 226
MhlI	GDGCHC	2 cut(s)	17, 172
MluCI	AATT	2 cut(s)	392, 542
MnlI	CCTC	4 cut(s)	75, 78, 201, 268
MreI	CGCCGGCG	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	314
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	81
NaeI	GCCGGC	1 cut(s)	316
NdeII	GATC	2 cut(s)	108, 300
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	1 cut(s)	512
NlaIV	GGNNCC	3 cut(s)	171, 486, 538
NmuCI	GTSAC	3 cut(s)	268, 396, 529
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	413
PkrI	GCNGC	6 cut(s)	58, 86, 190, 253, 313, 562
Ple19I	CGATCG	1 cut(s)	303
PshAI	GACNNNNGTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	3 cut(s)	171, 486, 538
PspPI	GGNCC	2 cut(s)	359, 537
PsyI	GACNNNGTC	1 cut(s)	413
PvuI	CGATCG	1 cut(s)	303
RsaI	GTAC	2 cut(s)	344, 486
RsaNI	GTAC	2 cut(s)	343, 485
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	48
SatI	GCNGC	6 cut(s)	57, 85, 189, 252, 312, 561
Sau3AI	GATC	2 cut(s)	108, 300
Sau96I	GGNCC	2 cut(s)	359, 537
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	17, 172
SgrAI	CRCCGGYG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	3 cut(s)	142, 154, 160
SmoI	CTYRAG	3 cut(s)	142, 154, 160
Sse9I	AATT	2 cut(s)	392, 542
SsiI	CCGC	5 cut(s)	57, 211, 227, 252, 312
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	259, 574
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	392, 542
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	3 cut(s)	59, 254, 314
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	3 cut(s)	268, 396, 529
TseI	GCWGC	3 cut(s)	84, 188, 560
Tsp45I	GTSAC	3 cut(s)	268, 396, 529
TspRI	CASTG	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.