Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Forward (+)

72260042 .. 72261127

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0604800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCCAGCAGAGATATTTGCTCGTCTAGGATCTGATATTGGTCCTTTGATGTTCGTGGGTTCGATCATATCGCACTACCTTCCTCATGAACTTGGAAGCTACATCAATACATACTTTCAAAGACTGGTGCTTTTCGCCACACCTTGCATCCAAATCACATTCAATGAATTAGCAGGAGAGCGTCCCACGCGCAATGAAGCCTATTCTGCTGTGGAGAACTATCTGAGCATAATGTACTCAAAGGAAGCAAAGAGGCTGAAGGCTGATATCAAGAACAACTCCCTTGTTCTTAGCATGGATGAGTATGAAGTGGCCGCAGATGAGTTTGAAGGAGCCAAAGTGTGGTGGGTTTCTGGAAAGAGTTGTTCCAAGACAGACAGAAATTCTTCTTACTACAAGCTCTTCTTCCATAAAAGGCACAGGGATCTCATCATCAGGCGATACCTCACCCATGTCTTAAAGGAAGAACCAAATTTGAGAAACCCCCGAAGAAAGCTTTATAGCAACATGGGGCCACACTGGAGCCATGTAGTGTTTCAGAACCCGGCAACATTTCAGACACTAGCCATGGAGCCAGAGAAGAAGAAGGAAATCATCCTTGACCTAAATGTATTCAGCACAGCAGGAGGGTTTTATGCAAGAACTGGGAGGGCATGGAAGCGAGGCTATCTCCTTTTTGGCCCTCCAGGGACTGGCAAGTCCACATTAATTGCTGCCATGGCCAATCATTTAGGCTATGACACTTATGATCTTGACTTGACTGCAGTGGAGGACAACACTGAGCTGAGGAAGCTATTGATCGAAACATCAAGTAAGTCCATAATTGTAATAGAGGACATTGATAGTGCGCTTGATTTCTCAGGCCAAATGAGGAAGAGAATAGCTAATGGGGAAGAGGAGGAAATGGGAAGGCTTGGGATACAAGAAAGAGAAACCAAACCCTATCAGGTTACTATTTCTGGCATTCTAAACTTCATTGATGGGCTGGGGTCATCTTGTTGCGGAGAAAGGCTCATTGTCTTCACAACTAATCATGTGGAGAAACTCGATGCAGCACTAGCTGATTCGGAAAGGAAGGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

361

Amino Acids

40.95

Weight (kDa)

6.53

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	27 - 118	2.3e-20	Domain associated at C-terminal with AAA
AAA	PF00004	223 - 355	4.2e-13	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	697
AccB7I	CCANNNNNTGG	2 cut(s)	342, 692
AccII	CGCG	1 cut(s)	190
AciI	CCGC	2 cut(s)	315, 1002
AclWI	GGATC	2 cut(s)	37, 432
AcoI	YGGCCR	2 cut(s)	312, 720
AcsI	RAATTY	2 cut(s)	382, 472
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	342, 692
AgsI	TTSAA	3 cut(s)	119, 163, 329
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	7 cut(s)	99, 400, 496, 784, 793, 884, 1061
AluI	AGCT	7 cut(s)	99, 400, 496, 784, 793, 884, 1061
AlwI	GGATC	2 cut(s)	37, 432
AlwNI	CAGNNNCTG	1 cut(s)	692
AoxI	GGCC	5 cut(s)	312, 512, 679, 720, 862
ApeKI	GCWGC	2 cut(s)	713, 1052
ApoI	RAATTY	2 cut(s)	382, 472
AseI	ATTAAT	1 cut(s)	707
Asp700I	GAANNNNTTC	1 cut(s)	385
AspLEI	GCGC	2 cut(s)	192, 850
AspS9I	GGNCC	3 cut(s)	41, 512, 680
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	1012
BbvCI	CCTCAGC	1 cut(s)	785
BbvI	GCAGC	2 cut(s)	700, 1064
BccI	CCATC	2 cut(s)	974, 1073
BciT130I	CCWGG	1 cut(s)	687
BciVI	GTATCC	1 cut(s)	912
BcnI	CCSGG	1 cut(s)	545
BfaI	CTAG	3 cut(s)	26, 563, 1058
BfmI	CTRYAG	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	912
BisI	GCNGC	3 cut(s)	315, 714, 1053
BlsI	GCNGC	3 cut(s)	316, 715, 1054
Bme1390I	CCNGG	2 cut(s)	545, 687
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	3 cut(s)	41, 512, 680
BmiI	GGNNCC	4 cut(s)	334, 513, 524, 573
BmrFI	CCNGG	2 cut(s)	545, 687
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	156, 1039
BmuI	ACTGGG	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	1012
BplI	GAGNNNNNCTC	4 cut(s)	654, 686, 996, 1028
BpmI	CTGGAG	2 cut(s)	541, 669
Bpu10I	CCTNAGC	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	567, 686, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 692
Bse1I	ACTGG	4 cut(s)	129, 524, 649, 697
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	3 cut(s)	567, 686, 717
BseGI	GGATG	4 cut(s)	147, 304, 594, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	342, 692
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	4 cut(s)	215, 771, 776, 873
BseNI	ACTGG	4 cut(s)	129, 524, 649, 697
BseRI	GAGGAG	1 cut(s)	911
BseXI	GCAGC	2 cut(s)	700, 1064
BseYI	CCCAGC	1 cut(s)	985
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	5 cut(s)	314, 514, 681, 722, 864
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	2 cut(s)	168, 703
BslI	CCNNNNNNNGG	2 cut(s)	342, 692
BsmFI	GGGAC	2 cut(s)	168, 703
BsmI	GAATGC	1 cut(s)	963
BsnI	GGCC	5 cut(s)	314, 514, 681, 722, 864
Bsp143I	GATC	5 cut(s)	29, 63, 424, 748, 798
Bsp19I	CCATGG	2 cut(s)	567, 717
BspACI	CCGC	2 cut(s)	315, 1002
BspANI	GGCC	5 cut(s)	314, 514, 681, 722, 864
BspCNI	CTCAG	4 cut(s)	216, 772, 777, 872
BspFNI	CGCG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	4 cut(s)	334, 513, 524, 573
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	2 cut(s)	37, 432
BspQI	GCTCTTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	199
BsrI	ACTGG	4 cut(s)	129, 524, 649, 697
BssECI	CCNNGG	3 cut(s)	567, 686, 717
BssMI	GATC	5 cut(s)	29, 63, 424, 748, 798
BssT1I	CCWWGG	2 cut(s)	567, 717
Bst2UI	CCWGG	1 cut(s)	687
Bst6I	CTCTTC	3 cut(s)	407, 869, 888
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	224, 290, 780, 785, 859
BstDSI	CCRYGG	2 cut(s)	567, 717
BstF5I	GGATG	4 cut(s)	147, 304, 594, 1084
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	192, 850
BstKTI	GATC	5 cut(s)	32, 66, 427, 751, 801
BstMBI	GATC	5 cut(s)	29, 63, 424, 748, 798
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 206, 719, 790, 1058
BstNI	CCWGG	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	543, 685
BstSFI	CTRYAG	1 cut(s)	762
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	700, 1064
BstV2I	GAAGAC	1 cut(s)	1012
BstX2I	RGATCY	2 cut(s)	29, 424
BstYI	RGATCY	2 cut(s)	29, 424
BsuI	GTATCC	1 cut(s)	912
BsuRI	GGCC	5 cut(s)	314, 514, 681, 722, 864
BtgI	CCRYGG	2 cut(s)	567, 717
BtsCI	GGATG	4 cut(s)	147, 304, 594, 1084
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	3 cut(s)	517, 771, 777
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	692
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	2 cut(s)	192, 850
Cfr13I	GGNCC	3 cut(s)	41, 512, 680
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	9 cut(s)	86, 295, 452, 508, 527, 568, 654, 718, 1034
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	5 cut(s)	224, 290, 780, 785, 859
DpnI	GATC	5 cut(s)	31, 65, 426, 750, 800
DpnII	GATC	5 cut(s)	29, 63, 424, 748, 798
DrdI	GACNNNNNNGTC	1 cut(s)	697
DseDI	GACNNNNNNGTC	1 cut(s)	697
EaeI	YGGCCR	2 cut(s)	312, 720
Eam1104I	CTCTTC	3 cut(s)	407, 869, 888
EarI	CTCTTC	3 cut(s)	407, 869, 888
Eco130I	CCWWGG	2 cut(s)	567, 717
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	567, 717
ErhI	CCWWGG	2 cut(s)	567, 717
FaeI	CATG	9 cut(s)	89, 298, 455, 511, 530, 571, 657, 721, 1037
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	2 cut(s)	168, 703
FatI	CATG	9 cut(s)	85, 294, 451, 507, 526, 567, 653, 717, 1033
Fnu4HI	GCNGC	3 cut(s)	315, 714, 1053
FokI	GGATG	3 cut(s)	134, 311, 581
Fsp4HI	GCNGC	3 cut(s)	315, 714, 1053
FspBI	CTAG	3 cut(s)	26, 563, 1058
GlaI	GCGC	2 cut(s)	191, 849
GluI	GCNGC	3 cut(s)	315, 714, 1053
GsaI	CCCAGC	1 cut(s)	989
GsuI	CTGGAG	2 cut(s)	541, 669
HaeIII	GGCC	5 cut(s)	314, 514, 681, 722, 864
HapII	CCGG	1 cut(s)	545
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	192, 850
Hin1II	CATG	9 cut(s)	89, 298, 455, 511, 530, 571, 657, 721, 1037
Hin6I	GCGC	2 cut(s)	190, 848
HinP1I	GCGC	2 cut(s)	190, 848
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	1 cut(s)	1064
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	1 cut(s)	702
Hpy188I	TCNGA	5 cut(s)	34, 225, 540, 558, 1069
Hpy188III	TCNNGA	4 cut(s)	86, 271, 354, 752
Hpy8I	GTNNAC	1 cut(s)	702
HpyAV	CCTTC	6 cut(s)	89, 253, 323, 580, 903, 1069
HpyCH4V	TGCA	4 cut(s)	147, 638, 764, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 206, 719, 790, 1058
HpyF3I	CTNAG	5 cut(s)	224, 290, 780, 785, 859
Hsp92II	CATG	9 cut(s)	89, 298, 455, 511, 530, 571, 657, 721, 1037
HspAI	GCGC	2 cut(s)	190, 848
Kzo9I	GATC	5 cut(s)	29, 63, 424, 748, 798
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	3 cut(s)	332, 522, 571
Lsp1109I	GCAGC	2 cut(s)	700, 1064
LweI	GCATC	2 cut(s)	156, 1039
MaeI	CTAG	3 cut(s)	26, 563, 1058
MaeIII	GTNAC	1 cut(s)	949
MalI	GATC	5 cut(s)	31, 65, 426, 750, 800
MboI	GATC	5 cut(s)	29, 63, 424, 748, 798
MflI	RGATCY	2 cut(s)	29, 424
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	5 cut(s)	167, 382, 472, 708, 822
MluNI	TGGCCA	1 cut(s)	722
Mox20I	TGGCCA	1 cut(s)	722
MroXI	GAANNNNTTC	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	2 cut(s)	458, 707
Msp20I	TGGCCA	1 cut(s)	722
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	2 cut(s)	545, 687
Mva1269I	GAATGC	1 cut(s)	963
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	5 cut(s)	187, 206, 719, 790, 1058
NciI	CCSGG	1 cut(s)	545
NcoI	CCATGG	2 cut(s)	567, 717
NdeII	GATC	5 cut(s)	29, 63, 424, 748, 798
NlaIII	CATG	9 cut(s)	89, 298, 455, 511, 530, 571, 657, 721, 1037
NlaIV	GGNNCC	4 cut(s)	334, 513, 524, 573
PagI	TCATGA	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	407
PctI	GAATGC	1 cut(s)	963
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	1064
PflMI	CCANNNNNTGG	2 cut(s)	342, 692
PkrI	GCNGC	3 cut(s)	316, 715, 1054
PshBI	ATTAAT	1 cut(s)	707
Psp6I	CCWGG	1 cut(s)	685
PspFI	CCCAGC	1 cut(s)	985
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	4 cut(s)	334, 513, 524, 573
PspPI	GGNCC	3 cut(s)	41, 512, 680
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	29, 424
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	458, 707
SatI	GCNGC	3 cut(s)	315, 714, 1053
Sau3AI	GATC	5 cut(s)	29, 63, 424, 748, 798
Sau96I	GGNCC	3 cut(s)	41, 512, 680
ScrFI	CCNGG	2 cut(s)	545, 687
SfaNI	GCATC	2 cut(s)	156, 1039
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	5 cut(s)	167, 382, 472, 708, 822
SsiI	CCGC	2 cut(s)	315, 1002
SspMI	CTAG	3 cut(s)	26, 563, 1058
StyD4I	CCNGG	2 cut(s)	543, 685
StyI	CCWWGG	2 cut(s)	567, 717
TaqI	TCGA	3 cut(s)	62, 801, 1047
TasI	AATT	5 cut(s)	167, 382, 472, 708, 822
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	1064
Tru1I	TTAA	2 cut(s)	458, 707
Tru9I	TTAA	2 cut(s)	458, 707
TscAI	CASTG	3 cut(s)	524, 771, 784
TseI	GCWGC	2 cut(s)	713, 1052
TspDTI	ATGAA	5 cut(s)	102, 180, 210, 321, 964
TspRI	CASTG	3 cut(s)	524, 771, 784
Van91I	CCANNNNNTGG	2 cut(s)	342, 692
VpaK11BI	GGWCC	1 cut(s)	41
VspI	ATTAAT	1 cut(s)	707
XapI	RAATTY	2 cut(s)	382, 472
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	3 cut(s)	26, 563, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.