Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

351484 .. 354060

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG004600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCAACTGGAGTGCTCTCCATCACAGAAATCAATAATGGCTCTTCTCCAGTCTGCCACTCTCCCTCCTCTTCGCTCCATTTGCTGCTCCACTTCGTCCAAACATCCGATCACTTACCCTTCTTCCATTTCAAGCTCAGGCTCAAGTTCAAGCTCAAGCTCAAGCTGGGCTCCCAACAAGAAGAATGCTGCCCTTGTGGGCTTGGTGAGGCGGAAGACTGCCTTTGCGGTCAGGTCTAGCTTGGACACTGCCGCCACCGTCGGCCAGGTCACCGAGGTCGACAAGGACACCTTCTGGCCGATCGTCAACGCCGCCGGCGACAAGACCGTCGTCCTTGATATGTACACCCAATGGTATGCATCATGCTCTCTCCCCCCGCCCATTATTTTCCTCTTTTTTCACCTTCCTGCACGCTCGATCTTGAGAAAATTCGACACTCGAAAGAAAGATGATGCAATTTTCAGAATGTTTTGGTCATGTCTGTCTGAGTATTTCAAGGAAACAAAATTACTTAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

173

Amino Acids

19.19

Weight (kDa)

9.42

Isoelectric Point (pI)

61.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	5 cut(s)	211, 227, 252, 312, 377
AcoI	YGGCCR	2 cut(s)	262, 296
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	132, 150, 496
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	5 cut(s)	135, 153, 159, 165, 240
AluI	AGCT	5 cut(s)	135, 153, 159, 165, 240
Alw21I	GWGCWC	1 cut(s)	17
AoxI	GGCC	2 cut(s)	262, 296
ApeKI	GCWGC	2 cut(s)	84, 188
ApoI	RAATTY	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	217, 262, 392
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	71, 175
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	4 cut(s)	85, 189, 252, 312
BlsI	GCNGC	4 cut(s)	86, 190, 253, 313
Bme1390I	CCNGG	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	368, 442
BoxI	GACNNNNGTC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	2 cut(s)	29, 32
Bpu10I	CCTNAGC	1 cut(s)	136
BpuEI	CTTGAG	4 cut(s)	127, 139, 145, 442
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	12, 49
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	150, 477
BseNI	ACTGG	2 cut(s)	12, 49
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	71, 175
BseYI	CCCAGC	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	264, 298
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	264, 298
Bsp1286I	GDGCHC	2 cut(s)	17, 172
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	108, 300, 417
BspACI	CCGC	5 cut(s)	211, 227, 252, 312, 377
BspANI	GGCC	2 cut(s)	264, 298
BspCNI	CTCAG	2 cut(s)	149, 478
BspLI	GGNNCC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	12, 49
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	108, 300, 417
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	259, 328
Bst6I	CTCTTC	2 cut(s)	48, 75
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	316, 412
BstDEI	CTNAG	2 cut(s)	136, 486
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	3 cut(s)	111, 303, 420
BstMBI	GATC	3 cut(s)	108, 300, 417
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	266
BstPAI	GACNNNNGTC	1 cut(s)	329
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	71, 175
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	264, 298
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	316, 412
Cfr10I	RCCGGY	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	363, 477
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	2 cut(s)	136, 486
DpnI	GATC	3 cut(s)	110, 302, 419
DpnII	GATC	3 cut(s)	108, 300, 417
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	262, 296
Eam1104I	CTCTTC	2 cut(s)	48, 75
EarI	CTCTTC	2 cut(s)	48, 75
EciI	GGCGGA	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	172
Eco91I	GGTNACC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	2 cut(s)	366, 480
FaiI	YATR	4 cut(s)	341, 357, 364, 478
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 275, 307
FatI	CATG	2 cut(s)	362, 476
FauI	CCCGC	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	85, 189, 252, 312
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	85, 189, 252, 312
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	4 cut(s)	85, 189, 252, 312
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	29, 32
HaeIII	GGCC	2 cut(s)	264, 298
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	2 cut(s)	366, 480
HincII	GTYRAC	2 cut(s)	280, 307
HindII	GTYRAC	2 cut(s)	280, 307
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	3 cut(s)	217, 262, 392
Hpy166II	GTNNAC	3 cut(s)	280, 307, 345
Hpy188I	TCNGA	3 cut(s)	108, 464, 487
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	3 cut(s)	280, 307, 345
Hpy99I	CGWCG	2 cut(s)	263, 332
HpyAV	CCTTC	3 cut(s)	129, 301, 413
HpyCH4III	ACNGT	2 cut(s)	259, 328
HpyCH4V	TGCA	4 cut(s)	4, 359, 410, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	2 cut(s)	136, 486
Hsp92II	CATG	2 cut(s)	366, 480
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	108, 300, 417
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	3 cut(s)	80, 92, 175
LpnPI	CCDG	9 cut(s)	62, 123, 151, 217, 251, 278, 280, 328, 420
Lsp1109I	GCAGC	2 cut(s)	71, 175
LweI	GCATC	2 cut(s)	368, 442
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	3 cut(s)	110, 302, 419
MboI	GATC	3 cut(s)	108, 300, 417
MboII	GAAGA	5 cut(s)	35, 62, 114, 193, 226
MhlI	GDGCHC	2 cut(s)	17, 172
MluCI	AATT	4 cut(s)	428, 456, 506, 514
MnlI	CCTC	5 cut(s)	75, 78, 201, 268, 401
Mph1103I	ATGCAT	1 cut(s)	361
MreI	CGCCGGCG	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	314
MseI	TTAA	1 cut(s)	513
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	81
NaeI	GCCGGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	108, 300, 417
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	366, 480
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	1 cut(s)	190
PdiI	GCCGGC	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	86, 190, 253, 313
Ple19I	CGATCG	1 cut(s)	303
PshAI	GACNNNNGTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	171
PvuI	CGATCG	1 cut(s)	303
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	4 cut(s)	85, 189, 252, 312
Sau3AI	GATC	3 cut(s)	108, 300, 417
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	17, 172
SfaNI	GCATC	2 cut(s)	368, 442
SgrAI	CRCCGGYG	1 cut(s)	314
SmlI	CTYRAG	4 cut(s)	142, 154, 160, 421
SmoI	CTYRAG	4 cut(s)	142, 154, 160, 421
Sse9I	AATT	4 cut(s)	428, 456, 506, 514
SsiI	CCGC	5 cut(s)	211, 227, 252, 312, 377
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	259, 328
TaqI	TCGA	4 cut(s)	279, 416, 432, 439
TasI	AATT	4 cut(s)	428, 456, 506, 514
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	2 cut(s)	254, 314
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	84, 188
Tsp45I	GTSAC	1 cut(s)	268
TspRI	CASTG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.