Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

5363420 .. 5365391

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCTCTCTCTCTCCGACTTGCTCCATCTCCGACGTCTTTCCGTTATTCTCCGATTACATCTACCGGCGCCGGAGGATTTTCCCCCGTGAAGCAGCACTGCCGGATCCCGAATTCGGGCGTCGCGACGAAAATTGGATTCTGTTCTGGTGGTGGTGGTGTTTTAGATTCCGGTAGAAGGATTGGTTCCTGTGTGGTGAGGTGTAGCTTAGAAACAGTGAATGTCACTGTTGGCCAGGTGACGGAGGTTGATAAGGACACGTTCTGGCCAATTGTTAAAGCCGCCGGTGATAAGATTGTTGTCCTCGACATGTACACTCAGTGGTGTGGTCCTTGCAAAGTGATTGCTCCCAAATACAAAGAGCTATCGGAGAAGTACCAGGACATGGTGTTTCTTAAGCTTGATTGTAACCAAGACAACAAGCCATTGGCGAAAGAGCTAGGAATTAGAGTGGTTCCAACTTTTAAAATCTTGAAAGACAACAAGGTAGTAAAGGAAGTGACCGGGGCAAAATATGAAGACTTACTTGCAGCCATTGAAGCAGCAAGGTCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

185

Amino Acids

20.0

Weight (kDa)

9.06

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	80 - 179	6e-24	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	385
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	100, 113
AcoI	YGGCCR	2 cut(s)	232, 266
AcsI	RAATTY	1 cut(s)	112
AcyI	GRCGYC	3 cut(s)	35, 69, 120
AdeI	CACNNNGTG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	314, 377
AfiI	CCNNNNNNNGG	5 cut(s)	115, 116, 177, 241, 385
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	2 cut(s)	258, 309
AgsI	TTSAA	2 cut(s)	475, 539
AjnI	CCWGG	2 cut(s)	234, 378
AluBI	AGCT	4 cut(s)	207, 364, 400, 439
AluI	AGCT	4 cut(s)	207, 364, 400, 439
AlwI	GGATC	2 cut(s)	100, 113
AoxI	GGCC	2 cut(s)	232, 266
ApeKI	GCWGC	3 cut(s)	94, 530, 542
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	3 cut(s)	208, 250, 299
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	2 cut(s)	234, 268
BamHI	GGATCC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	106, 542, 554
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	236, 380
BcnI	CCSGG	1 cut(s)	505
BfaI	CTAG	1 cut(s)	440
BfoI	RGCGCY	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	395
BisI	GCNGC	4 cut(s)	95, 282, 531, 543
BlsI	GCNGC	4 cut(s)	96, 283, 532, 544
Bme1390I	CCNGG	3 cut(s)	236, 380, 505
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	4 cut(s)	70, 107, 187, 456
BmrFI	CCNGG	3 cut(s)	236, 380, 505
BpiI	GAAGAC	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	505
BsaHI	GRCGYC	3 cut(s)	35, 69, 120
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 116, 177, 241, 385
Bse118I	RCCGGY	2 cut(s)	65, 284
BseBI	CCWGG	2 cut(s)	236, 380
BseDI	CCNNGG	1 cut(s)	504
BseLI	CCNNNNNNNGG	5 cut(s)	115, 116, 177, 241, 385
BseMII	CTCAG	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	106, 542, 554
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	234, 268
BshNI	GGYRCC	1 cut(s)	68
BsiSI	CCGG	6 cut(s)	66, 72, 103, 171, 285, 504
BslI	CCNNNNNNNGG	5 cut(s)	115, 116, 177, 241, 385
BsnI	GGCC	2 cut(s)	234, 268
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	105
Bsp68I	TCGCGA	1 cut(s)	125
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	2 cut(s)	234, 268
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	4 cut(s)	70, 107, 187, 456
BspPI	GGATC	2 cut(s)	100, 113
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	395
BsrFI	RCCGGY	2 cut(s)	65, 284
BsrGI	TGTACA	1 cut(s)	312
BssAI	RCCGGY	2 cut(s)	65, 284
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	3 cut(s)	35, 69, 120
Bst2UI	CCWGG	2 cut(s)	236, 380
Bst4CI	ACNGT	2 cut(s)	217, 229
BstACI	GRCGYC	3 cut(s)	35, 69, 120
BstAFI	CTTAAG	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	208, 318
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	2 cut(s)	236, 380
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	3 cut(s)	234, 378, 503
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	106, 542, 554
BstV2I	GAAGAC	1 cut(s)	525
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	234, 268
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	4 cut(s)	97, 222, 225, 326
BtuMI	TCGCGA	1 cut(s)	125
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	2 cut(s)	65, 284
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	313, 376
CviAII	CATG	2 cut(s)	310, 385
CviQI	GTAC	2 cut(s)	313, 376
DdeI	CTNAG	2 cut(s)	208, 318
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
DraI	TTTAAA	1 cut(s)	466
DraIII	CACNNNGTG	1 cut(s)	321
EaeI	YGGCCR	2 cut(s)	232, 266
Eco47I	GGWCC	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	234, 378
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
FaeI	CATG	2 cut(s)	313, 388
FaiI	YATR	3 cut(s)	311, 386, 516
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	2 cut(s)	309, 384
Fnu4HI	GCNGC	4 cut(s)	95, 282, 531, 543
Fsp4HI	GCNGC	4 cut(s)	95, 282, 531, 543
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	95, 282, 531, 543
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	234, 268
HapII	CCGG	6 cut(s)	66, 72, 103, 171, 285, 504
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	3 cut(s)	35, 69, 120
Hin1II	CATG	2 cut(s)	313, 388
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	138, 167
HpaII	CCGG	6 cut(s)	66, 72, 103, 171, 285, 504
HphI	GGTGA	3 cut(s)	208, 250, 299
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	4 cut(s)	17, 33, 54, 370
Hpy188III	TCNNGA	3 cut(s)	109, 124, 472
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	3 cut(s)	37, 125, 130
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	2 cut(s)	217, 229
HpyCH4IV	ACGT	2 cut(s)	35, 260
HpyCH4V	TGCA	2 cut(s)	336, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	208, 318
HpySE526I	ACGT	2 cut(s)	35, 260
Hsp92I	GRCGYC	3 cut(s)	35, 69, 120
Hsp92II	CATG	2 cut(s)	313, 388
HspAI	GCGC	1 cut(s)	69
KasI	GGCGCC	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	28, 352
Lsp1109I	GCAGC	3 cut(s)	106, 542, 554
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	35, 260
MaeIII	GTNAC	4 cut(s)	223, 238, 407, 499
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	1 cut(s)	530
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	105
MlsI	TGGCCA	2 cut(s)	234, 268
MluCI	AATT	4 cut(s)	112, 132, 270, 444
MluNI	TGGCCA	2 cut(s)	234, 268
Mly113I	GGCGCC	1 cut(s)	69
MmeI	TCCRAC	3 cut(s)	40, 56, 482
MnlI	CCTC	5 cut(s)	15, 68, 192, 238, 314
Mox20I	TGGCCA	2 cut(s)	234, 268
MscI	TGGCCA	2 cut(s)	234, 268
MseI	TTAA	3 cut(s)	276, 396, 465
Msp20I	TGGCCA	2 cut(s)	234, 268
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	6 cut(s)	66, 72, 103, 171, 285, 504
MspR9I	CCNGG	3 cut(s)	236, 380, 505
MunI	CAATTG	1 cut(s)	270
MvaI	CCWGG	2 cut(s)	236, 380
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	539
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	313, 388
NlaIV	GGNNCC	4 cut(s)	70, 107, 187, 456
NmuCI	GTSAC	3 cut(s)	223, 238, 499
NruI	TCGCGA	1 cut(s)	125
NspI	RCATGY	1 cut(s)	313
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	138, 167
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	96, 283, 532, 544
PluTI	GGCGCC	1 cut(s)	72
PscI	ACATGT	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	234, 378
PspGI	CCWGG	2 cut(s)	234, 378
PspN4I	GGNNCC	4 cut(s)	70, 107, 187, 456
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	105
RruI	TCGCGA	1 cut(s)	125
RsaI	GTAC	2 cut(s)	314, 377
RsaNI	GTAC	2 cut(s)	313, 376
SaqAI	TTAA	3 cut(s)	276, 396, 465
SatI	GCNGC	4 cut(s)	95, 282, 531, 543
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	236, 380, 505
SfoI	GGCGCC	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	112, 132, 270, 444
SsiI	CCGC	1 cut(s)	282
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	3 cut(s)	234, 378, 503
TaaI	ACNGT	2 cut(s)	217, 229
TaiI	ACGT	2 cut(s)	38, 263
TaqI	TCGA	1 cut(s)	306
TasI	AATT	4 cut(s)	112, 132, 270, 444
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	138, 167
Tru1I	TTAA	3 cut(s)	276, 396, 465
Tru9I	TTAA	3 cut(s)	276, 396, 465
TscAI	CASTG	4 cut(s)	104, 222, 232, 326
TseFI	GTSAC	3 cut(s)	223, 238, 499
TseI	GCWGC	3 cut(s)	94, 530, 542
Tsp45I	GTSAC	3 cut(s)	223, 238, 499
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	2 cut(s)	32, 257
TspRI	CASTG	4 cut(s)	104, 222, 232, 326
Van91I	CCANNNNNTGG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.