Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

49608457 .. 49609541

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTCATGAATTGAAGGATGAGAGGAATAAGTTGTTTCAGAAAAGGGACCCTGAAGGAGCTATGTTGAAGTATGAGAAAGCCCTCAGATTGCTTTCGAGAAATCACATTGATGTGTCCTATCTTCGAAGTAATATGGCGGCTTGTTATATGCAGATGGAGCTGAGTGAGTATCCGAGGGCTATTAATGAGTTGGATTTGGCTCTGAGATATGTTGGTACCGTGTTGAACATGGAACCGAACAATATCATGGTTGCAGAAAGAGTGAAAGATGTGCTAGAGGAGAAAGGATTGAGGGTGAATGACATTGACATGGTGATTGAGTTGCCTCCTGATTATACGAGGACGACAATGCGAGGATTTTGTGGTGTCTCAAGTGTAAAGAGGGTACTAGTGAAACCAACAAATTGTCGGTTTGTTGTGAGAATGGATGCCCAATTGTTATGCATGAAGTGTATGACGGTGCAGCCTCTGTTTGATGATATGGGTAACTTTAACTGCCCTTATTCTGCACACAAGTGGATAAGACATTCGTGCAAGCAGAAAGAGAAAATGTTAAACCTATCCGCTCTTAAATTGGCCAACTGGATTTTGAGGGCAACCGAAGGAGACAGTGAGCAAAGAAGGAGGGACGTTGACGATGATAAAGAGAATGGCGGTGTATCTGCAGGGCAGGATTTTGAGTGTGTTAAAGGGGGAGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

236

Amino Acids

27.05

Weight (kDa)

7.54

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	569
AciI	CCGC	3 cut(s)	140, 567, 657
AcoI	YGGCCR	1 cut(s)	579
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	220, 390
AgsI	TTSAA	3 cut(s)	16, 70, 229
AhlI	ACTAGT	1 cut(s)	391
AleI	CACNNNNGTG	1 cut(s)	517
AluBI	AGCT	3 cut(s)	62, 163, 705
AluI	AGCT	3 cut(s)	62, 163, 705
Alw26I	GTCTC	2 cut(s)	376, 603
AlwNI	CAGNNNCTG	1 cut(s)	472
AoxI	GGCC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	466
AseI	ATTAAT	1 cut(s)	186
Asp718I	GGTACC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	310, 328
AsuII	TTCGAA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	376, 603
BcuI	ACTAGT	1 cut(s)	391
BfaI	CTAG	3 cut(s)	278, 392, 706
BfmI	CTRYAG	1 cut(s)	666
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	141, 467
BlsI	GCNGC	2 cut(s)	142, 468
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	50, 51, 220, 237
BmsI	GCATC	1 cut(s)	421
Bpu14I	TTCGAA	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	590
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	2 cut(s)	25, 436
BseMII	CTCAG	3 cut(s)	100, 155, 197
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	2 cut(s)	485, 495
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	62, 644
BsmAI	GTCTC	2 cut(s)	376, 603
BsmFI	GGGAC	2 cut(s)	62, 644
BsnI	GGCC	1 cut(s)	581
Bsp119I	TTCGAA	1 cut(s)	127
BspACI	CCGC	3 cut(s)	140, 567, 657
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	3 cut(s)	99, 156, 198
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	50, 51, 220, 237
BspMAI	CTGCAG	1 cut(s)	670
BspT104I	TTCGAA	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	223, 463, 614
BstBI	TTCGAA	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	3 cut(s)	86, 164, 206
BstF5I	GGATG	2 cut(s)	25, 436
BstMAI	GTCTC	2 cut(s)	376, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	666
BstV1I	GCAGC	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	25, 436
BtsIMutI	CAGTG	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	539
CaiI	CAGNNNCTG	1 cut(s)	472
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	219, 389
CviAII	CATG	5 cut(s)	8, 232, 250, 313, 448
CviQI	GTAC	2 cut(s)	219, 389
DdeI	CTNAG	3 cut(s)	86, 164, 206
EaeI	YGGCCR	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	449
FaeI	CATG	5 cut(s)	11, 235, 253, 316, 451
FaqI	GGGAC	2 cut(s)	62, 644
FatI	CATG	5 cut(s)	7, 231, 249, 312, 447
Fnu4HI	GCNGC	2 cut(s)	141, 467
FokI	GGATG	2 cut(s)	32, 443
Fsp4HI	GCNGC	2 cut(s)	141, 467
FspBI	CTAG	3 cut(s)	278, 392, 706
GluI	GCNGC	5 cut(s)	60, 435, 615, 1265, 1268
HaeIII	GGCC	1 cut(s)	581
Hin1II	CATG	5 cut(s)	11, 235, 253, 316, 451
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HphI	GGTGA	2 cut(s)	310, 328
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	4 cut(s)	42, 89, 177, 207
Hpy188III	TCNNGA	3 cut(s)	8, 99, 332
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	4 cut(s)	10, 50, 599, 618
HpyCH4III	ACNGT	3 cut(s)	223, 463, 614
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	7 cut(s)	154, 257, 447, 466, 512, 537, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	3 cut(s)	86, 164, 206
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	5 cut(s)	11, 235, 253, 316, 451
KflI	GGGWCCC	1 cut(s)	49
KpnI	GGTACC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	59, 160
LpnPI	CCDG	5 cut(s)	66, 345, 571, 654, 659
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	3 cut(s)	278, 392, 706
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	1 cut(s)	488
MbiI	CCGCTC	1 cut(s)	569
MboII	GAAGA	1 cut(s)	116
MfeI	CAATTG	1 cut(s)	437
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	4 cut(s)	11, 406, 437, 575
MluNI	TGGCCA	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	5 cut(s)	186, 495, 557, 573, 690
MslI	CAYNNNNRTG	4 cut(s)	111, 113, 311, 517
Msp20I	TGGCCA	1 cut(s)	581
MunI	CAATTG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	160
NlaIII	CATG	5 cut(s)	11, 235, 253, 316, 451
NlaIV	GGNNCC	4 cut(s)	50, 51, 220, 237
NsiI	ATGCAT	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	127
OliI	CACNNNNGTG	1 cut(s)	517
PagI	TCATGA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	142, 468
PpuMI	RGGWCCY	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	49
PspN4I	GGNNCC	4 cut(s)	50, 51, 220, 237
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	472
RsaI	GTAC	2 cut(s)	220, 390
RsaNI	GTAC	2 cut(s)	219, 389
RseI	CAYNNNNRTG	4 cut(s)	111, 113, 311, 517
SaqAI	TTAA	5 cut(s)	186, 495, 557, 573, 690
SatI	GCNGC	2 cut(s)	141, 467
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	5 cut(s)	64, 165, 564, 636, 707
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	666
SfuI	TTCGAA	1 cut(s)	127
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	4 cut(s)	111, 113, 311, 517
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
SpeI	ACTAGT	1 cut(s)	391
Sse9I	AATT	4 cut(s)	11, 406, 437, 575
SsiI	CCGC	3 cut(s)	140, 567, 657
SspMI	CTAG	3 cut(s)	278, 392, 706
TaaI	ACNGT	3 cut(s)	223, 463, 614
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	2 cut(s)	98, 127
TasI	AATT	4 cut(s)	11, 406, 437, 575
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	5 cut(s)	186, 495, 557, 573, 690
Tru9I	TTAA	5 cut(s)	186, 495, 557, 573, 690
TscAI	CASTG	1 cut(s)	619
TseI	GCWGC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	24, 464
TspRI	CASTG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	186
XspI	CTAG	3 cut(s)	278, 392, 706
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.