Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Reverse (-)

72281703 .. 72282110

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0605000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGAGGGTGTCCTTTGGGACTACGGGCTCGTCGGCGATCTCTAGCCAGTCCTATGCCATTGGGAGGCTTTTGTCTCAGAAGAAGATCGAACTTTTACTCACGTCCTTTTATGGCTACCATGGCCAATGTGTGGGGGTTGAAACAGCGACTCTCTATCCGGAATCAAGGCCATCGTTTCATTTTGCGCTTTACGAAGACGAAGGAACGAGACAAGATCTTGTTCGAAGGGCCATGGTTCTACGGTCGCTCTATGTTTGCTTTGGCCGTGTATGACGGCTGCTGTGAGGCGGAGTCGGTGCCCATCCCAGCGATCCCGGTCTGGGTGGAAGTGCTTGGCCTTCCTCCAATACTGATGACCATTGAAGCTATCTCCATGATCGGTGCTTCTCTGGGTCAGGTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

135

Amino Acids

15.16

Weight (kDa)

10.36

Isoelectric Point (pI)

74.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	40 - 92	1.1e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	2 cut(s)	123, 264
AfiI	CCNNNNNNNGG	3 cut(s)	65, 132, 322
AgsI	TTSAA	2 cut(s)	142, 365
AjiI	CACGTC	1 cut(s)	104
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw26I	GTCTC	2 cut(s)	80, 204
AlwI	GGATC	1 cut(s)	307
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	5 cut(s)	123, 169, 230, 264, 337
ApeKI	GCWGC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	230, 400
AsuC2I	CCSGG	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	2 cut(s)	180, 311
BceAI	ACGGC	2 cut(s)	251, 292
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	80, 204
BfaI	CTAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	400
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	230, 400
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	203
Bpu14I	TTCGAA	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	120, 233
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 132, 322
Bse1I	ACTGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	120, 233
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	65, 132, 322
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	307
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	5 cut(s)	125, 171, 232, 266, 339
BshNI	GGYRCC	1 cut(s)	298
BsiEI	CGRYCG	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	160, 317
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	65, 132, 322
BsmAI	GTCTC	2 cut(s)	80, 204
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	5 cut(s)	125, 171, 232, 266, 339
Bsp119I	TTCGAA	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	31, 303
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	38, 86, 216, 312, 378
Bsp19I	CCATGG	2 cut(s)	120, 233
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	5 cut(s)	125, 171, 232, 266, 339
BspCNI	CTCAG	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	120, 233
BssMI	GATC	5 cut(s)	38, 86, 216, 312, 378
BssT1I	CCWWGG	2 cut(s)	120, 233
Bst4CI	ACNGT	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	2 cut(s)	120, 233
BstF5I	GGATG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	5 cut(s)	41, 89, 219, 315, 381
BstMAI	GTCTC	2 cut(s)	80, 204
BstMBI	GATC	5 cut(s)	38, 86, 216, 312, 378
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	5 cut(s)	125, 171, 232, 266, 339
BtgI	CCRYGG	2 cut(s)	120, 233
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	303
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	230, 400
CviAII	CATG	3 cut(s)	121, 234, 376
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	5 cut(s)	40, 88, 218, 314, 380
DpnII	GATC	5 cut(s)	38, 86, 216, 312, 378
EaeI	YGGCCR	2 cut(s)	123, 264
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	120, 233
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	120, 233
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	120, 233
FaeI	CATG	3 cut(s)	124, 237, 379
FaiI	YATR	7 cut(s)	56, 113, 122, 235, 254, 273, 377
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	120, 233, 375
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	280
GsaI	CCCAGC	1 cut(s)	311
HaeIII	GGCC	5 cut(s)	125, 171, 232, 266, 339
HapII	CCGG	2 cut(s)	160, 317
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	124, 237, 379
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	150, 163, 293
HpaII	CCGG	2 cut(s)	160, 317
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	196, 221, 350
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	124, 237, 379
HspAI	GCGC	1 cut(s)	187
Kpn2I	TCCGGA	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	38, 86, 216, 312, 378
LpnPI	CCDG	7 cut(s)	61, 173, 307, 321, 330, 377, 383
Lsp1109I	GCAGC	1 cut(s)	266
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	103
MalI	GATC	5 cut(s)	40, 88, 218, 314, 380
MboI	GATC	5 cut(s)	38, 86, 216, 312, 378
MboII	GAAGA	3 cut(s)	93, 96, 208
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	31, 303
MlsI	TGGCCA	1 cut(s)	125
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	144, 302
MnlI	CCTC	3 cut(s)	59, 280, 354
Mox20I	TGGCCA	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	406
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	2 cut(s)	160, 317
MspR9I	CCNGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	317
NcoI	CCATGG	2 cut(s)	120, 233
NdeII	GATC	5 cut(s)	38, 86, 216, 312, 378
NlaIII	CATG	3 cut(s)	124, 237, 379
NlaIV	GGNNCC	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	2 cut(s)	144, 301
PpsI	GAGTC	2 cut(s)	144, 301
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	230, 400
PspPPI	RGGWCCY	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	5 cut(s)	38, 86, 216, 312, 378
Sau96I	GGNCC	2 cut(s)	230, 400
SchI	GAGTC	2 cut(s)	144, 302
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	31, 303
SetI	ASST	3 cut(s)	106, 370, 402
SfuI	TTCGAA	1 cut(s)	225
SinI	GGWCC	1 cut(s)	400
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	120, 233
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	89, 225
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	400
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.