Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006466

Physical Location & Seq

Genomic Coordinates Forward (+)

30508257 .. 30510511

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G362500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTCTGCAGACTGCTGCTGCTCTCTCTCCTCGTTCCATTAGCTCCTCAACGATGTTACCCTGCGCCGCGAAGCATCCGATCATTTATTCTTCTACTTCAAGTTCAAGCTGCTTCCTCTCGCAGGCGCAGAGGAAGAATGTGGCAGTGGGCTTCAGTGGTGTAACAACCAGTAAGAGGAAGCGGGCCTGTGCCTCTACGGTGAAGTCGAGCTTGGACACTGTAGGCCCCACTGTCAATGTGGGTCAGGTCACGGAGGTTGACAAGGACACCTTCTGGCCCATCGTCAAGGCCGCCGGCGATAAGACCGTCGTCCTCGATATGTACACGCAATGGTGTGGTCCTTGCAAGGTGATTGCTCCAAAATATCAAGAATTGTCAAAGAAATATCTTGATGTTGTATTTTTAAAGCTTGACTGTAACCAAGAAAATAAGCAGCCATTGGCAAAGGAGCTTGGGATAAGGGTGGTGCCAACTTTCAAGATTTTGAAGGACAACCAGGTTGTAAAAGAAGTGAAGGGGGCCAAATTCGATGATTTAGTTGCTGCCATAGACGTTGTTAGATCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006109 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019222 GO:0019725 GO:0019904 GO:0030234 GO:0031976 GO:0031984 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0080090 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

191

Amino Acids

20.58

Weight (kDa)

9.39

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02730 AT5G16400
fragaria_vesca	FvH4_6g00380 FvH4_6g00380
malus_domestica	MD04G1246200.v1.1 MD12G1263900.v1.1
prunus_persica	Prupe.6G362500_v2.0.a1 Prupe.6G362500_v2.0.a1
pyrus_communis	pycom12g23990 pycom15g06310
rosa_chinensis	RchiOBHm_Chr3g0447721
rosa_laevigata	RLG00000025978
rosa_multiflora	Rmu_sc0003550.1_g000001 Rmu_ssc0000391.1_g000003 Rmu_ssc0000391.1_g000009
rosa_roxburghii	Rroxscaffold_6G00425920
rosa_rugosa	Rorug02G0604800 Rorug02G0604900 Rorug02G0605000
rosa_samantha	Rh3AG004600 Rh3BG004100 Rh3BG004300 Rh3CG004100 Rh3CG004600 Rh3DG004500
rosa_wichuraiana	Rw3G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	469
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	69, 184, 294
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	1 cut(s)	139
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	124, 177
AgsI	TTSAA	4 cut(s)	102, 108, 481, 490
AjnI	CCWGG	1 cut(s)	498
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	6 cut(s)	45, 111, 213, 412, 454, 570
AluI	AGCT	6 cut(s)	45, 111, 213, 412, 454, 570
AoxI	GGCC	5 cut(s)	186, 226, 278, 291, 522
ApeKI	GCWGC	5 cut(s)	17, 20, 111, 436, 545
ApoI	RAATTY	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	68, 130
AspS9I	GGNCC	5 cut(s)	186, 227, 279, 341, 522
AsuHPI	GGTGA	2 cut(s)	214, 364
AvaII	GGWCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	469
BbvI	GCAGC	5 cut(s)	4, 7, 98, 448, 532
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	8, 222
BisI	GCNGC	7 cut(s)	18, 21, 69, 112, 294, 437, 546
BlsI	GCNGC	7 cut(s)	19, 22, 70, 113, 295, 438, 547
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	5 cut(s)	186, 227, 279, 341, 522
BmiI	GGNNCC	3 cut(s)	229, 471, 523
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	1 cut(s)	85
BoxI	GACNNNNGTC	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 177
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	500
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	124, 177
BseMI	GCAATG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	21, 37
BseXI	GCAGC	5 cut(s)	4, 7, 98, 448, 532
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	5 cut(s)	188, 228, 280, 293, 524
BshNI	GGYRCC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	124, 177
BsnI	GGCC	5 cut(s)	188, 228, 280, 293, 524
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	81, 563
BspACI	CCGC	3 cut(s)	69, 184, 294
BspANI	GGCC	5 cut(s)	188, 228, 280, 293, 524
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	3 cut(s)	229, 471, 523
BspMAI	CTGCAG	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	2 cut(s)	81, 563
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	5 cut(s)	202, 223, 235, 310, 419
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	126, 186, 298
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	68, 130
BstKTI	GATC	2 cut(s)	84, 566
BstMBI	GATC	2 cut(s)	81, 563
BstNI	CCWGG	1 cut(s)	500
BstPAI	GACNNNNGTC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	2 cut(s)	8, 222
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	5 cut(s)	4, 7, 98, 448, 532
BsuRI	GGCC	5 cut(s)	188, 228, 280, 293, 524
BtsCI	GGATG	1 cut(s)	76
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	4 cut(s)	153, 163, 219, 231
Cac8I	GCNNGC	3 cut(s)	126, 186, 298
CfoI	GCGC	2 cut(s)	68, 130
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	5 cut(s)	186, 227, 279, 341, 522
CsiI	ACCWGGT	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	325
CviQI	GTAC	1 cut(s)	325
DpnI	GATC	2 cut(s)	83, 565
DpnII	GATC	2 cut(s)	81, 563
DraI	TTTAAA	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	498
FaiI	YATR	2 cut(s)	323, 551
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 257, 289
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	7 cut(s)	18, 21, 69, 112, 294, 437, 546
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	7 cut(s)	18, 21, 69, 112, 294, 437, 546
GlaI	GCGC	2 cut(s)	67, 129
GluI	GCNGC	7 cut(s)	18, 21, 69, 112, 294, 437, 546
HaeIII	GGCC	5 cut(s)	188, 228, 280, 293, 524
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	2 cut(s)	68, 130
Hin6I	GCGC	2 cut(s)	66, 128
HinP1I	GCGC	2 cut(s)	66, 128
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	410
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	214, 364
Hpy166II	GTNNAC	2 cut(s)	262, 327
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	3 cut(s)	371, 392, 481
Hpy8I	GTNNAC	2 cut(s)	262, 327
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	283, 484, 511
HpyCH4III	ACNGT	5 cut(s)	202, 223, 235, 310, 419
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	2 cut(s)	10, 348
HpySE526I	ACGT	1 cut(s)	555
HspAI	GCGC	2 cut(s)	66, 128
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	81, 563
LmnI	GCTCC	3 cut(s)	50, 364, 451
LpnPI	CCDG	9 cut(s)	76, 110, 184, 202, 233, 262, 310, 485, 512
Lsp1109I	GCAGC	5 cut(s)	4, 7, 98, 448, 532
LweI	GCATC	1 cut(s)	85
MabI	ACCWGGT	1 cut(s)	498
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	4 cut(s)	57, 163, 250, 419
MalI	GATC	2 cut(s)	83, 565
MboI	GATC	2 cut(s)	81, 563
MboII	GAAGA	2 cut(s)	84, 148
MluCI	AATT	2 cut(s)	374, 527
MnlI	CCTC	8 cut(s)	42, 58, 126, 128, 171, 205, 250, 326
MreI	CGCCGGCG	1 cut(s)	296
MroNI	GCCGGC	1 cut(s)	296
MseI	TTAA	1 cut(s)	407
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	71
NaeI	GCCGGC	1 cut(s)	298
NdeII	GATC	2 cut(s)	81, 563
NgoMIV	GCCGGC	1 cut(s)	296
NlaIV	GGNNCC	3 cut(s)	229, 471, 523
NmuCI	GTSAC	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	298
PkrI	GCNGC	7 cut(s)	19, 22, 70, 113, 295, 438, 547
PshAI	GACNNNNGTC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	3 cut(s)	229, 471, 523
PspPI	GGNCC	5 cut(s)	186, 227, 279, 341, 522
PstI	CTGCAG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	7 cut(s)	18, 21, 69, 112, 294, 437, 546
Sau3AI	GATC	2 cut(s)	81, 563
Sau96I	GGNCC	5 cut(s)	186, 227, 279, 341, 522
ScrFI	CCNGG	1 cut(s)	500
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	2 cut(s)	8, 222
SgrAI	CRCCGGYG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	341
Sse9I	AATT	2 cut(s)	374, 527
SsiI	CCGC	3 cut(s)	69, 184, 294
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	5 cut(s)	202, 223, 235, 310, 419
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	3 cut(s)	209, 318, 531
TasI	AATT	2 cut(s)	374, 527
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	2 cut(s)	71, 296
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	4 cut(s)	153, 163, 226, 238
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	5 cut(s)	17, 20, 111, 436, 545
Tsp45I	GTSAC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	4 cut(s)	153, 163, 226, 238
VpaK11BI	GGWCC	1 cut(s)	341
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.