Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Reverse (-)

665223 .. 666922

Gene Structure 1700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCAGTTAAAGCAAGGAGAATTTCTGGTAGATTAGAGACTGTAGTAACTAAGGTTAATTATGCATTTGATCCTGTTGACGATGACAAAATCATAAGAAACCGGCTTCTAACCCGAACCACGACCACTCGAGGCGAGCCTCCATTGAAGAAACTTCAGAAGAAGTTCACTTCTTTTGTACTCGAGGTGGATAAAGAAGAAGAGAACTATAACGACTGCGGTAGACTTGCCAAAGCTTTTTTACAGGAACTGTCAACTTTCGAGATTCCGCTTCTGAAGAGCCAAGCGGTTGTGGAAGCAAACCTTAGGGAGAAAGAGAGCTTTAATGAGGTGAAAGATGAGACGGAAAGGCAGATAATGCAGGCGAAAGCTGAGATTGAAGATCTAAAGAAGCAGCTTGAGGAGAGTAAAATAGATAGACAGCATAAAGAAGAGTGTGAGACGATAAGGAAACTGATTTCTGCGCAACCGCCAAGGTCAGAGACAGAGAAGGTTATATATGAATTGAACAAGGAGATTGCTGAGCTTGAAGCAGAGAGCACTGCAAGTTGGAGATTGCTTGAGCTAAGGAAGAAGCAGTTTGCTCTCCTGATGCATGTGGTGGATGAGTTGCAGAACACAATGGAAGATGAGCAGAAGAGTTTGGTGGACGAGATTCGGTCAGCGTCGGAAGATCAGAGGAACATAACCGACGCTATGTCTGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

236

Amino Acids

27.46

Weight (kDa)

5.13

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THOC7	PF05615	29 - 165	3.9e-33	Tho complex subunit 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	4 cut(s)	219, 269, 287, 470
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	2 cut(s)	140, 296
AfaI	GTAC	1 cut(s)	180
AgsI	TTSAA	4 cut(s)	148, 380, 508, 530
AhdI	GACNNNNNGTC	1 cut(s)	697
AluBI	AGCT	6 cut(s)	236, 321, 371, 397, 526, 565
AluI	AGCT	6 cut(s)	236, 321, 371, 397, 526, 565
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	4 cut(s)	32, 335, 434, 476
AlwI	GGATC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	250
Ama87I	CYCGRG	2 cut(s)	129, 182
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	129, 182
AxyI	CCTNAGG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	406
BcoDI	GTCTC	4 cut(s)	32, 335, 434, 476
BfmI	CTRYAG	1 cut(s)	42
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	1 cut(s)	395
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	396
BmeRI	GACNNNNNGTC	1 cut(s)	697
BmeT110I	CYCGRG	2 cut(s)	129, 182
BmsI	GCATC	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	566
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	2 cut(s)	419, 581
BsaJI	CCNNGG	1 cut(s)	473
Bse118I	RCCGGY	1 cut(s)	102
Bse21I	CCTNAGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	1 cut(s)	610
BseMII	CTCAG	2 cut(s)	363, 513
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	2 cut(s)	129, 182
BsiSI	CCGG	1 cut(s)	103
BsmAI	GTCTC	4 cut(s)	32, 335, 434, 476
BsmBI	CGTCTC	2 cut(s)	335, 434
BsoBI	CYCGRG	2 cut(s)	129, 182
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	3 cut(s)	70, 382, 673
Bsp1720I	GCTNAGC	1 cut(s)	522
BspACI	CCGC	4 cut(s)	219, 269, 287, 470
BspCNI	CTCAG	2 cut(s)	364, 514
BspPI	GGATC	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	3 cut(s)	70, 382, 673
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	43, 252
Bst6I	CTCTTC	4 cut(s)	195, 272, 426, 632
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	137, 363
BstDEI	CTNAG	5 cut(s)	51, 305, 372, 522, 566
BstF5I	GGATG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	3 cut(s)	73, 385, 676
BstMAI	GTCTC	4 cut(s)	32, 335, 434, 476
BstMBI	GATC	3 cut(s)	70, 382, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	599
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu36I	CCTNAGG	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	137, 363
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	102
CseI	GACGC	2 cut(s)	654, 701
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	1 cut(s)	596
CviJI	RGCY	9 cut(s)	106, 139, 236, 282, 321, 371, 397, 526, 565
CviKI_1	RGCY	9 cut(s)	106, 139, 236, 282, 321, 371, 397, 526, 565
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	5 cut(s)	51, 305, 372, 522, 566
DpnI	GATC	3 cut(s)	72, 384, 675
DpnII	GATC	3 cut(s)	70, 382, 673
DriI	GACNNNNNGTC	1 cut(s)	697
Eam1104I	CTCTTC	4 cut(s)	195, 272, 426, 632
Eam1105I	GACNNNNNGTC	1 cut(s)	697
EarI	CTCTTC	4 cut(s)	195, 272, 426, 632
Eco130I	CCWWGG	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	140, 296
Eco81I	CCTNAGG	1 cut(s)	305
Eco88I	CYCGRG	2 cut(s)	129, 182
EcoT14I	CCWWGG	1 cut(s)	473
EcoT22I	ATGCAT	2 cut(s)	67, 597
ErhI	CCWWGG	1 cut(s)	473
Esp3I	CGTCTC	2 cut(s)	335, 434
FaeI	CATG	1 cut(s)	599
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	395
FspI	TGCGCA	1 cut(s)	465
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	395
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	2 cut(s)	654, 701
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	1 cut(s)	599
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	2 cut(s)	79, 255
HindII	GTYRAC	2 cut(s)	79, 255
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	265, 655
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	5 cut(s)	79, 168, 224, 255, 649
Hpy188I	TCNGA	5 cut(s)	159, 276, 481, 670, 678
Hpy188III	TCNNGA	2 cut(s)	262, 589
Hpy8I	GTNNAC	5 cut(s)	79, 168, 224, 255, 649
Hpy99I	CGWCG	2 cut(s)	670, 695
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	43, 252
HpyCH4V	TGCA	5 cut(s)	65, 361, 545, 595, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	5 cut(s)	51, 305, 372, 522, 566
Hsp92II	CATG	1 cut(s)	599
HspAI	GCGC	1 cut(s)	464
Kzo9I	GATC	3 cut(s)	70, 382, 673
LguI	GCTCTTC	1 cut(s)	272
LpnPI	CCDG	6 cut(s)	12, 87, 116, 230, 347, 602
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	72, 384, 675
MboI	GATC	3 cut(s)	70, 382, 673
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	542
MluCI	AATT	3 cut(s)	21, 58, 503
MmeI	TCCRAC	2 cut(s)	530, 648
MnlI	CCTC	6 cut(s)	125, 150, 178, 322, 394, 672
Mph1103I	ATGCAT	2 cut(s)	67, 597
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	4 cut(s)	9, 57, 324, 709
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	3 cut(s)	70, 382, 673
NlaIII	CATG	1 cut(s)	599
NsbI	TGCGCA	1 cut(s)	465
NsiI	ATGCAT	2 cut(s)	67, 597
NspI	RCATGY	1 cut(s)	599
PaeR7I	CTCGAG	2 cut(s)	129, 182
PciSI	GCTCTTC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	265, 655
PkrI	GCNGC	1 cut(s)	396
PspXI	VCTCGAGB	2 cut(s)	129, 182
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	9, 57, 324, 709
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	3 cut(s)	70, 382, 673
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	42
Sfr274I	CTCGAG	2 cut(s)	129, 182
SlaI	CTCGAG	2 cut(s)	129, 182
SmlI	CTYRAG	4 cut(s)	129, 182, 398, 560
SmoI	CTYRAG	4 cut(s)	129, 182, 398, 560
Sse9I	AATT	3 cut(s)	21, 58, 503
SsiI	CCGC	4 cut(s)	219, 269, 287, 470
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	2 cut(s)	43, 252
TaqI	TCGA	3 cut(s)	130, 183, 261
TaqII	GACCGA	1 cut(s)	648
TasI	AATT	3 cut(s)	21, 58, 503
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	265, 655
Tru1I	TTAA	4 cut(s)	9, 57, 324, 709
Tru9I	TTAA	4 cut(s)	9, 57, 324, 709
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	1 cut(s)	394
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	1 cut(s)	547
XapI	RAATTY	1 cut(s)	21
XceI	RCATGY	1 cut(s)	599
XhoI	CTCGAG	2 cut(s)	129, 182
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	164
Zsp2I	ATGCAT	2 cut(s)	67, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.