Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

2508622 .. 2510537

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G027400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCTGGTAAAAGGAAGAAAGGTTTCTGGGCGGGGAGAGGCCGTGGCGGCGAACTACGCGTTCGGGCCGCTCGAAGATGACGTAATCATCAAGCACAGACTTCTCACTCGAACCACAACCACAAGAGGCGAACCCCCATTGAAGAAGCTCCAGAAGAAGTTCACATCCCTATTCGTCGAGCTCGACAAGAACGAGGACAACTATGGCGACTGCGACAAGCTGGCCAAAGCTTTCCTCCAAGAGCTCAGCACCTTCGAGATTCCGCTCCTCAAGAGCAAAGCGGTTGTGGATGCGAATCTCAGAGAGAAGCACAATTTTGACGAGTTGAGGGAGGAGATAAATCGGCAGATAGTGCAAGCGCAGACCGACATTGAATTGCTGAAGAAGCAGCTTGAGGAGAGTAAAATCGAAAGAAGGCATAAGGAGGAGTGTGAGGCAATCAGGAAAATGATCGCTACGCAACCGCCTCGGTCCGAAACGCTCAAAATCATATCCGATTTGGAGAAAGAGATTGCCGCTTTGGACGCTGAGAACACGGCAAGTTCGAGGATGCTGGAGCTCCGAAAGAAGCAGTTTGCTCTGCTCTTGCATGTGGTGGATGAGTTGCAGAACACCATAGAGGAAGAGCAGAAGAGTTTGATTGAGGAGAAAGAGCACAAACACGGAATGGAGGATGCAAGTGGGGGCTTGGAACCCATGCATGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

237

Amino Acids

27.05

Weight (kDa)

5.65

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	70, 265
AccII	CGCG	1 cut(s)	59
AciI	CCGC	7 cut(s)	31, 47, 68, 263, 281, 464, 516
AcoI	YGGCCR	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	142, 374
AluBI	AGCT	7 cut(s)	148, 181, 220, 230, 244, 391, 559
AluI	AGCT	7 cut(s)	148, 181, 220, 230, 244, 391, 559
Alw21I	GWGCWC	4 cut(s)	183, 246, 561, 657
AoxI	GGCC	3 cut(s)	39, 65, 222
ApeKI	GCWGC	1 cut(s)	388
Asp700I	GAANNNNTTC	2 cut(s)	22, 158
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	65, 471
AvaII	GGWCC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	224
BanII	GRGCYC	3 cut(s)	183, 246, 561
Bbv12I	GWGCWC	4 cut(s)	183, 246, 561, 657
BbvI	GCAGC	1 cut(s)	400
BceAI	ACGGC	2 cut(s)	26, 552
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	4 cut(s)	48, 68, 389, 516
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	4 cut(s)	49, 69, 390, 517
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	2 cut(s)	65, 471
BmiI	GGNNCC	1 cut(s)	693
BmsI	GCATC	3 cut(s)	280, 540, 664
BpmI	CTGGAG	2 cut(s)	134, 575
Bpu1102I	GCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	254, 413
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	42, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse8I	GATNNNNATC	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	42, 467
BseGI	GGATG	5 cut(s)	164, 295, 555, 604, 679
BseJI	GATNNNNATC	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	259, 313, 519
BseRI	GAGGAG	5 cut(s)	257, 347, 410, 440, 659
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	41, 67, 224
BsiHKAI	GWGCWC	4 cut(s)	183, 246, 561, 657
BsnI	GGCC	3 cut(s)	41, 67, 224
Bsp1286I	GDGCHC	4 cut(s)	183, 246, 561, 657
Bsp143I	GATC	1 cut(s)	450
Bsp1720I	GCTNAGC	1 cut(s)	245
BspACI	CCGC	7 cut(s)	31, 47, 68, 263, 281, 464, 516
BspANI	GGCC	3 cut(s)	41, 67, 224
BspCNI	CTCAG	3 cut(s)	258, 312, 520
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	693
BspQI	GCTCTTC	1 cut(s)	618
BsrBI	CCGCTC	2 cut(s)	70, 265
BssECI	CCNNGG	2 cut(s)	42, 467
BssMI	GATC	1 cut(s)	450
Bst6I	CTCTTC	2 cut(s)	618, 626
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	222, 357
BstDEI	CTNAG	3 cut(s)	245, 299, 528
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	5 cut(s)	164, 295, 555, 604, 679
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	453
BstMBI	GATC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 56, 352, 385, 524
BstNSI	RCATGY	2 cut(s)	593, 704
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	41, 67, 224
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	5 cut(s)	164, 295, 555, 604, 679
Cac8I	GCNNGC	2 cut(s)	222, 357
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	65, 471
CpoI	CGGWCCG	1 cut(s)	471
CseI	GACGC	1 cut(s)	533
CspI	CGGWCCG	1 cut(s)	471
CviAII	CATG	3 cut(s)	590, 697, 701
DdeI	CTNAG	3 cut(s)	245, 299, 528
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	618, 626
EarI	CTCTTC	2 cut(s)	618, 626
Ecl136II	GAGCTC	3 cut(s)	181, 244, 559
Eco24I	GRGCYC	3 cut(s)	183, 246, 561
Eco47I	GGWCC	1 cut(s)	471
Eco53kI	GAGCTC	3 cut(s)	181, 244, 559
Eco57I	CTGAAG	1 cut(s)	401
EcoICRI	GAGCTC	3 cut(s)	181, 244, 559
EcoT22I	ATGCAT	1 cut(s)	702
EcoT38I	GRGCYC	3 cut(s)	183, 246, 561
FaeI	CATG	3 cut(s)	593, 700, 704
FaiI	YATR	7 cut(s)	204, 420, 491, 591, 617, 698, 702
FatI	CATG	3 cut(s)	589, 696, 700
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	4 cut(s)	48, 68, 389, 516
FokI	GGATG	5 cut(s)	151, 302, 562, 611, 686
FriOI	GRGCYC	3 cut(s)	183, 246, 561
Fsp4HI	GCNGC	4 cut(s)	48, 68, 389, 516
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	4 cut(s)	48, 68, 389, 516
GsuI	CTGGAG	2 cut(s)	134, 575
HaeIII	GGCC	3 cut(s)	41, 67, 224
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	593, 700, 704
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	2 cut(s)	259, 295
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	302, 475, 496, 563
Hpy188III	TCNNGA	4 cut(s)	151, 256, 271, 442
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	262, 408
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	355, 589, 607, 677, 700
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 56, 352, 385, 524
HpyF3I	CTNAG	3 cut(s)	245, 299, 528
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	593, 700, 704
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	450
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	4 cut(s)	153, 270, 556, 564
LpnPI	CCDG	5 cut(s)	12, 164, 206, 427, 539
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	3 cut(s)	280, 540, 664
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	452
MbiI	CCGCTC	2 cut(s)	70, 265
MboI	GATC	1 cut(s)	450
MboII	GAAGA	7 cut(s)	27, 86, 154, 166, 394, 635, 643
MhlI	GDGCHC	4 cut(s)	183, 246, 561, 657
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	2 cut(s)	313, 374
MluI	ACGCGT	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	224
Mox20I	TGGCCA	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	702
MroXI	GAANNNNTTC	2 cut(s)	22, 158
MscI	TGGCCA	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	224
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	5 cut(s)	47, 56, 352, 385, 524
NdeII	GATC	1 cut(s)	450
NlaIII	CATG	3 cut(s)	593, 700, 704
NlaIV	GGNNCC	1 cut(s)	693
NsiI	ATGCAT	1 cut(s)	702
NspI	RCATGY	2 cut(s)	593, 704
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	5 cut(s)	69, 78, 180, 189, 542
PdmI	GAANNNNTTC	2 cut(s)	22, 158
PfeI	GAWTC	2 cut(s)	259, 295
PkrI	GCNGC	4 cut(s)	49, 69, 390, 517
Psp124BI	GAGCTC	3 cut(s)	183, 246, 561
PspN4I	GGNNCC	1 cut(s)	693
PspPI	GGNCC	2 cut(s)	65, 471
Rsr2I	CGGWCCG	1 cut(s)	471
RsrII	CGGWCCG	1 cut(s)	471
SacI	GAGCTC	3 cut(s)	183, 246, 561
SapI	GCTCTTC	1 cut(s)	618
SatI	GCNGC	4 cut(s)	48, 68, 389, 516
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	2 cut(s)	65, 471
SduI	GDGCHC	4 cut(s)	183, 246, 561, 657
SfaNI	GCATC	3 cut(s)	280, 540, 664
SinI	GGWCC	1 cut(s)	471
SmlI	CTYRAG	2 cut(s)	269, 392
SmoI	CTYRAG	2 cut(s)	269, 392
Sse9I	AATT	2 cut(s)	313, 374
SsiI	CCGC	7 cut(s)	31, 47, 68, 263, 281, 464, 516
SstI	GAGCTC	3 cut(s)	183, 246, 561
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	7 cut(s)	72, 109, 177, 183, 255, 408, 545
TaqII	GACCGA	2 cut(s)	380, 459
TasI	AATT	2 cut(s)	313, 374
TauI	GCSGC	3 cut(s)	50, 70, 518
TfiI	GAWTC	2 cut(s)	259, 295
TseI	GCWGC	1 cut(s)	388
TspGWI	ACGGA	1 cut(s)	678
VpaK11BI	GGWCC	1 cut(s)	471
XceI	RCATGY	2 cut(s)	593, 704
XmnI	GAANNNNTTC	2 cut(s)	22, 158
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.