Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Reverse (-)

20217145 .. 20217488

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCTGGCGAAAGGAAGAAAAGTTTCAGGGCGGGGAGAGGCCGTGGCGGCGAACACCGCAAGTTCGCGGACGCTGGAGCTGAGGAAGAAGCAGTTTGCTCTGCTCCTGCACGTGGTGGATGAGTTGCAGAATACCTTAGAGGTAGAACAGAGGAGTTTAATTGAGGAGAAAGAAGAGAAAAATGGAATGGAAGAGCAGCTGGGGGCTCGGAAGTCGGAACCCATGCATGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0008283 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0031990 GO:0032991 GO:0033036 GO:0033554 GO:0034605 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0098687 GO:1901360 GO:1902579

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

79

Amino Acids

8.76

Weight (kDa)

6.13

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	67
AciI	CCGC	4 cut(s)	31, 47, 57, 67
AcvI	CACGTG	1 cut(s)	112
AdeI	CACNNNGTG	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	79, 199
AluI	AGCT	2 cut(s)	79, 199
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	208
BbrPI	CACGTG	1 cut(s)	112
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	48, 197
BlsI	GCNGC	2 cut(s)	49, 198
BmiI	GGNNCC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	166, 179
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	208
BspACI	CCGC	4 cut(s)	31, 47, 57, 67
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	168, 186
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	80, 136
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 56
BstNSI	RCATGY	1 cut(s)	230
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	79
CviAII	CATG	2 cut(s)	223, 227
CviJI	RGCY	4 cut(s)	41, 79, 199, 206
CviKI_1	RGCY	4 cut(s)	41, 79, 199, 206
DdeI	CTNAG	2 cut(s)	80, 136
DraIII	CACNNNGTG	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	168, 186
EarI	CTCTTC	2 cut(s)	168, 186
Eco24I	GRGCYC	1 cut(s)	208
Eco72I	CACGTG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	2 cut(s)	226, 230
FaiI	YATR	2 cut(s)	224, 228
FatI	CATG	2 cut(s)	222, 226
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	48, 197
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	48, 197
GluI	GCNGC	2 cut(s)	48, 197
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	41
HgaI	GACGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	226, 230
Hpy188I	TCNGA	2 cut(s)	210, 217
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	109, 127, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 56
HpyF3I	CTNAG	2 cut(s)	80, 136
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	226, 230
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	76, 108
LpnPI	CCDG	4 cut(s)	12, 59, 119, 185
Lsp1109I	GCAGC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	111
MboII	GAAGA	4 cut(s)	27, 97, 185, 203
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	5 cut(s)	31, 75, 133, 144, 157
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	47, 56
NlaIII	CATG	2 cut(s)	226, 230
NlaIV	GGNNCC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	49, 198
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	112
PspCI	CACGTG	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	48, 197
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	5 cut(s)	81, 114, 137, 144, 201
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	4 cut(s)	31, 47, 57, 67
TaiI	ACGT	1 cut(s)	114
TasI	AATT	1 cut(s)	159
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.