Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Reverse (-)

5522417 .. 5524011

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCAGTGAGAGCTAGGAGGATTGTTTCGGGTAGATCAGAGACTGTAGCAGCTAATTATGCTTTCGATCCGTTACATGATGACAAAATTATAAGAAATAGGCTTCTCACACGCACGACCACCACCAGAGGCGAACCTCCATTGAAGAAGCTTCAGAAGAAATTCACTTCTTTTGTTATTGAACTAGACAAAGAAGAAGATAACTACAGTGAGTGTGGTAGGCTCGCGAAAGCTTTCTTGCAAGAACTCTCTGCGTTTGAGATTCCGCTTCTTAAGAGCCAAGTAGTTGTCGCTGCAAATCTTAGGGAGAAAGAGAACTTTAACGAGCTTAAAGATGAGACGAATAGGCAGATAATGCAGGCACAAGCTGATATAGAAGATCTTAAGAAACAGCTTGAGGAGAGTAAGATAGAGAGACAACAGAAAGAGGAGTGTGAAGCCATTAGGAAACTTATCTCTGCGCAGCCACCGAGGTCAGAGACGCAGAAGGTTATACATGAATTGAAGAAGGAGATTGCAGAACTCGAGGCTGAGAATACAGCAAGTTGGAGACTTCTTGAACTAAGGAAGAAGCAGTTTGCATTGTTGTTGCATGTGGTGGATGAGTTGCAGGAGACAATGGAGGATGAACAGAAGAGTATGGTGGAAGAAATGCAGAGGAACATTACCGCTGATGGCGCTGAAGCCATGTCCATCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

233

Amino Acids

26.98

Weight (kDa)

5.33

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THOC7	PF05615	28 - 164	3.7e-34	Tho complex subunit 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	462
AccII	CGCG	1 cut(s)	227
AciI	CCGC	2 cut(s)	266, 669
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	137, 702
AflII	CTTAAG	2 cut(s)	272, 383
AgsI	TTSAA	4 cut(s)	145, 182, 505, 560
AluBI	AGCT	7 cut(s)	14, 53, 151, 233, 328, 368, 394
AluI	AGCT	7 cut(s)	14, 53, 151, 233, 328, 368, 394
Alw26I	GTCTC	6 cut(s)	35, 332, 409, 473, 544, 608
AlwI	GGATC	1 cut(s)	62
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	524
ApeKI	GCWGC	3 cut(s)	50, 293, 463
ApoI	RAATTY	1 cut(s)	161
Asp700I	GAANNNNTTC	2 cut(s)	161, 233
AspLEI	GCGC	2 cut(s)	463, 680
AvaI	CYCGRG	1 cut(s)	524
BbvI	GCAGC	3 cut(s)	62, 280, 475
BccI	CCATC	2 cut(s)	668, 701
BcoDI	GTCTC	6 cut(s)	35, 332, 409, 473, 544, 608
BfaI	CTAG	2 cut(s)	15, 185
BfmI	CTRYAG	2 cut(s)	45, 205
BfoI	RGCGCY	1 cut(s)	681
BfrI	CTTAAG	2 cut(s)	272, 383
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	3 cut(s)	51, 294, 464
BlsI	GCNGC	3 cut(s)	52, 295, 465
BmeT110I	CYCGRG	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	416
Bsa29I	ATCGAT	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	470
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	2 cut(s)	607, 631
BseMII	CTCAG	1 cut(s)	522
BseRI	GAGGAG	2 cut(s)	413, 443
BseXI	GCAGC	3 cut(s)	62, 280, 475
Bsh1236I	CGCG	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	696
BsiHKCI	CYCGRG	1 cut(s)	524
BsmAI	GTCTC	6 cut(s)	35, 332, 409, 473, 544, 608
BsmBI	CGTCTC	2 cut(s)	332, 473
BsoBI	CYCGRG	1 cut(s)	524
Bsp143I	GATC	3 cut(s)	35, 67, 379
Bsp68I	TCGCGA	1 cut(s)	227
BspACI	CCGC	2 cut(s)	266, 669
BspCNI	CTCAG	1 cut(s)	523
BspDI	ATCGAT	1 cut(s)	696
BspFNI	CGCG	1 cut(s)	227
BspPI	GGATC	1 cut(s)	62
BspTI	CTTAAG	2 cut(s)	272, 383
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	3 cut(s)	35, 67, 379
Bst4CI	ACNGT	2 cut(s)	46, 209
Bst6I	CTCTTC	1 cut(s)	629
BstAFI	CTTAAG	2 cut(s)	272, 383
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	225, 360
BstDEI	CTNAG	3 cut(s)	302, 531, 563
BstF5I	GGATG	2 cut(s)	607, 631
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	2 cut(s)	463, 680
BstKTI	GATC	3 cut(s)	38, 70, 382
BstMAI	GTCTC	6 cut(s)	35, 332, 409, 473, 544, 608
BstMBI	GATC	3 cut(s)	35, 67, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 355, 677
BstNSI	RCATGY	1 cut(s)	596
BstSFI	CTRYAG	2 cut(s)	45, 205
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	62, 280, 475
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
Bsu15I	ATCGAT	1 cut(s)	696
BsuTUI	ATCGAT	1 cut(s)	696
BtsCI	GGATG	2 cut(s)	607, 631
BtsIMutI	CAGTG	2 cut(s)	12, 214
BtuMI	TCGCGA	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	225, 360
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	2 cut(s)	463, 680
ClaI	ATCGAT	1 cut(s)	696
CseI	GACGC	1 cut(s)	490
CviAII	CATG	4 cut(s)	77, 497, 593, 688
DdeI	CTNAG	3 cut(s)	302, 531, 563
DpnI	GATC	3 cut(s)	37, 69, 381
DpnII	GATC	3 cut(s)	35, 67, 379
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	137, 702
Eco88I	CYCGRG	1 cut(s)	524
Esp3I	CGTCTC	2 cut(s)	332, 473
FaeI	CATG	4 cut(s)	80, 500, 596, 691
FaiI	YATR	9 cut(s)	60, 78, 92, 374, 494, 498, 594, 641, 689
FatI	CATG	4 cut(s)	76, 496, 592, 687
Fnu4HI	GCNGC	3 cut(s)	51, 294, 464
FokI	GGATG	2 cut(s)	614, 638
Fsp4HI	GCNGC	3 cut(s)	51, 294, 464
FspBI	CTAG	2 cut(s)	15, 185
FspI	TGCGCA	1 cut(s)	462
GlaI	GCGC	2 cut(s)	462, 679
GluI	GCNGC	3 cut(s)	51, 294, 464
HaeII	RGCGCY	1 cut(s)	681
HgaI	GACGC	1 cut(s)	490
HhaI	GCGC	2 cut(s)	463, 680
Hin1II	CATG	4 cut(s)	80, 500, 596, 691
Hin6I	GCGC	2 cut(s)	461, 678
HinP1I	GCGC	2 cut(s)	461, 678
HindIII	AAGCTT	2 cut(s)	149, 231
HinfI	GANTC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	40, 156, 478
Hpy188III	TCNNGA	2 cut(s)	226, 557
HpyAV	CCTTC	2 cut(s)	481, 502
HpyCH4III	ACNGT	2 cut(s)	46, 209
HpyCH4V	TGCA	8 cut(s)	241, 296, 358, 518, 581, 592, 610, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 355, 677
HpyF3I	CTNAG	3 cut(s)	302, 531, 563
Hsp92II	CATG	4 cut(s)	80, 500, 596, 691
HspAI	GCGC	2 cut(s)	461, 678
Kzo9I	GATC	3 cut(s)	35, 67, 379
LpnPI	CCDG	3 cut(s)	139, 344, 596
Lsp1109I	GCAGC	3 cut(s)	62, 280, 475
MaeI	CTAG	2 cut(s)	15, 185
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	3 cut(s)	37, 69, 381
MboI	GATC	3 cut(s)	35, 67, 379
MboII	GAAGA	9 cut(s)	157, 169, 206, 209, 389, 517, 580, 646, 659
MflI	RGATCY	1 cut(s)	379
MluCI	AATT	4 cut(s)	55, 87, 161, 500
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	9 cut(s)	12, 122, 147, 391, 421, 465, 520, 616, 651
MroXI	GAANNNNTTC	2 cut(s)	161, 233
MseI	TTAA	4 cut(s)	273, 321, 330, 384
MspA1I	CMGCKG	1 cut(s)	671
MspCI	CTTAAG	2 cut(s)	272, 383
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	3 cut(s)	59, 355, 677
NdeII	GATC	3 cut(s)	35, 67, 379
NlaIII	CATG	4 cut(s)	80, 500, 596, 691
NruI	TCGCGA	1 cut(s)	227
NsbI	TGCGCA	1 cut(s)	462
NspI	RCATGY	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	524
PdmI	GAANNNNTTC	2 cut(s)	161, 233
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	52, 295, 465
PsiI	TTATAA	1 cut(s)	92
PspXI	VCTCGAGB	1 cut(s)	524
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	379
RruI	TCGCGA	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	273, 321, 330, 384
SatI	GCNGC	3 cut(s)	51, 294, 464
Sau3AI	GATC	3 cut(s)	35, 67, 379
SfcI	CTRYAG	2 cut(s)	45, 205
Sfr274I	CTCGAG	1 cut(s)	524
SlaI	CTCGAG	1 cut(s)	524
SmlI	CTYRAG	4 cut(s)	272, 383, 395, 524
SmoI	CTYRAG	4 cut(s)	272, 383, 395, 524
Sse9I	AATT	4 cut(s)	55, 87, 161, 500
SsiI	CCGC	2 cut(s)	266, 669
SspMI	CTAG	2 cut(s)	15, 185
TaaI	ACNGT	2 cut(s)	46, 209
TaqI	TCGA	3 cut(s)	66, 525, 696
TasI	AATT	4 cut(s)	55, 87, 161, 500
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	4 cut(s)	273, 321, 330, 384
Tru9I	TTAA	4 cut(s)	273, 321, 330, 384
TscAI	CASTG	2 cut(s)	12, 214
TseI	GCWGC	3 cut(s)	50, 293, 463
TspDTI	ATGAA	2 cut(s)	513, 642
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	12, 214
Vha464I	CTTAAG	2 cut(s)	272, 383
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	161, 233
XspI	CTAG	2 cut(s)	15, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.