Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

37430796 .. 37433015

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCAGCCGCCTCGGTCTCAGGCGCTCAAGATCATATCGGATTTGGAGAAGGAGATTGCGGCTTTGGATTCGGAGAATACTGCCAGTTCAAGGATGCTGGAGCTTCGGAAGAAGCAGTTTGCCCTGCTCTTACATGTGGTGGATGAGTTGCAGACTACTATGGAGGAAGAGCAGAAGAGGTGTACAATGCATCTCGGATTTATAATTGTGGATGAGTTGCAGAATACCACAGAGGGAGAGCAGAAGAATTTAACTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

86

Amino Acids

9.89

Weight (kDa)

4.88

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AciI	CCGC	2 cut(s)	8, 59
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	90
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	16
BcgI	CGANNNNNNTGC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	3 cut(s)	5, 8, 60
BlsI	GCNGC	3 cut(s)	6, 9, 61
BmsI	GCATC	2 cut(s)	84, 199
BpmI	CTGGAG	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	3 cut(s)	99, 148, 217
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	32, 246
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	8, 59
BspCNI	CTCAG	2 cut(s)	31, 247
BspQI	GCTCTTC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	30
Bst6I	CTCTTC	2 cut(s)	162, 170
BstAUI	TGTACA	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	18, 255
BstF5I	GGATG	3 cut(s)	99, 148, 217
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	99, 148, 217
CfoI	GCGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	7, 62, 103
CviKI_1	RGCY	3 cut(s)	7, 62, 103
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	18, 255
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	162, 170
EarI	CTCTTC	2 cut(s)	162, 170
Eco31I	GGTCTC	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	192
FaeI	CATG	1 cut(s)	137
FaiI	YATR	4 cut(s)	35, 135, 161, 203
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	5, 8, 60
FokI	GGATG	3 cut(s)	106, 155, 224
Fsp4HI	GCNGC	3 cut(s)	5, 8, 60
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	5, 8, 60
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	26
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	4 cut(s)	40, 73, 108, 197
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	4, 151, 190, 220
HpyF3I	CTNAG	2 cut(s)	18, 255
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	5, 83, 97, 137
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	84, 199
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	4 cut(s)	121, 179, 187, 256
MluCI	AATT	2 cut(s)	204, 247
MnlI	CCTC	4 cut(s)	21, 157, 171, 226
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	1 cut(s)	251
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	192
NspI	RCATGY	1 cut(s)	137
PciI	ACATGT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	6, 9, 61
PscI	ACATGT	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	203
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	3 cut(s)	5, 8, 60
Sau3AI	GATC	1 cut(s)	30
SetI	ASST	2 cut(s)	105, 182
SfaNI	GCATC	2 cut(s)	84, 199
SgeI	CNNG	9 cut(s)	24, 32, 40, 96, 102, 110, 136, 146, 206
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	204, 247
SsiI	CCGC	2 cut(s)	8, 59
TasI	AATT	2 cut(s)	204, 247
TatI	WGTACW	1 cut(s)	182
TauI	GCSGC	2 cut(s)	10, 62
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseI	GCWGC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.