Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

2448174 .. 2448973

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCTGGTAAAAGGAAGAAAGGTTTCTAGGCGGGGAGAGACCGTGGCGGCGAACTACGCGTTCGGGCCGCTCGAAGATGACGTAATCATCAAGCACAGACTTCTCACTCGAAACCACAACCACAAGAGGCGAACCCCCATTGAAGAAGCTCCAGAAGAAGTTCACATCCCTCTCGACAAGAACGAGGACAACTATGGCGACTGCGACAAGCTGGCCAAAGCTTTCCTCCAAGAGCTCAGCACATTCGAGATTCCGCTCCTCAAGAGCAAAGCGGTTGTGGATGCAAATCTCAGAGAGAAGCACAATTTCGACGAGTTGAGGGAGGAGATAAATCGGCAGATAGTGCAAGCGCAGACCGACATTGAATTACTGAAGAAGCAGCTTGAGGAGAGTAAAATCGAAAGAAGGCATAAGGAGGAGTGTGAGGCGATCAGGAAAATGATCGCTACACAACCGCCTCGGTCCGAAACGCTCAAAATCATATCCGATTTGGAGAAAGAGATCGTCGCTTTGGACGCTGAGAACACGGCAAGTTCGAGGATGCTGGAGCTCCGAAAGAAGCAGTTTGCTCTGCTTTTGCATGTGGTGGATGAGTTGCAGAACACCATAGAGGAAGAGCAGAAGAGTTTGATTGAGGAGAAAGAGCACAAACACGGAATCCGTGCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

224

Amino Acids

25.94

Weight (kDa)

6.04

Isoelectric Point (pI)

70.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	70, 256
AccII	CGCG	1 cut(s)	59
AciI	CCGC	6 cut(s)	31, 47, 68, 254, 272, 455
AcoI	YGGCCR	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	143, 365
AluBI	AGCT	6 cut(s)	149, 211, 221, 235, 382, 550
AluI	AGCT	6 cut(s)	149, 211, 221, 235, 382, 550
Alw21I	GWGCWC	3 cut(s)	237, 552, 648
Alw26I	GTCTC	1 cut(s)	32
AoxI	GGCC	2 cut(s)	65, 213
ApeKI	GCWGC	1 cut(s)	379
Asp700I	GAANNNNTTC	2 cut(s)	22, 159
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	65, 462
AvaII	GGWCC	1 cut(s)	462
BalI	TGGCCA	1 cut(s)	215
BanII	GRGCYC	2 cut(s)	237, 552
Bbv12I	GWGCWC	3 cut(s)	237, 552, 648
BbvI	GCAGC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	48, 68, 380
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	3 cut(s)	49, 69, 381
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	2 cut(s)	65, 462
BmsI	GCATC	2 cut(s)	271, 531
BpmI	CTGGAG	2 cut(s)	135, 566
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	2 cut(s)	245, 404
BsaBI	GATNNNNATC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	42, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	42, 458
BseGI	GGATG	4 cut(s)	165, 286, 546, 595
BseJI	GATNNNNATC	1 cut(s)	285
BseMII	CTCAG	3 cut(s)	250, 304, 510
BseRI	GAGGAG	5 cut(s)	248, 338, 401, 431, 650
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	67, 215
BsiHKAI	GWGCWC	3 cut(s)	237, 552, 648
BsmAI	GTCTC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	67, 215
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	3 cut(s)	237, 552, 648
Bsp143I	GATC	3 cut(s)	429, 441, 501
Bsp1720I	GCTNAGC	1 cut(s)	236
BspACI	CCGC	6 cut(s)	31, 47, 68, 254, 272, 455
BspANI	GGCC	2 cut(s)	67, 215
BspCNI	CTCAG	3 cut(s)	249, 303, 511
BspFNI	CGCG	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	609
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	2 cut(s)	70, 256
BssECI	CCNNGG	2 cut(s)	42, 458
BssMI	GATC	3 cut(s)	429, 441, 501
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	609, 617
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	213, 348
BstDEI	CTNAG	3 cut(s)	236, 290, 519
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	4 cut(s)	165, 286, 546, 595
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	3 cut(s)	432, 444, 504
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	429, 441, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 343, 515
BstNSI	RCATGY	2 cut(s)	584, 669
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	67, 215
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	4 cut(s)	165, 286, 546, 595
Cac8I	GCNNGC	2 cut(s)	213, 348
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	65, 462
CpoI	CGGWCCG	1 cut(s)	462
CseI	GACGC	1 cut(s)	524
CspI	CGGWCCG	1 cut(s)	462
CviAII	CATG	2 cut(s)	581, 666
CviJI	RGCY	8 cut(s)	67, 149, 211, 215, 221, 235, 382, 550
CviKI_1	RGCY	8 cut(s)	67, 149, 211, 215, 221, 235, 382, 550
DdeI	CTNAG	3 cut(s)	236, 290, 519
DpnI	GATC	3 cut(s)	431, 443, 503
DpnII	GATC	3 cut(s)	429, 441, 501
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	2 cut(s)	609, 617
EarI	CTCTTC	2 cut(s)	609, 617
Ecl136II	GAGCTC	2 cut(s)	235, 550
Eco24I	GRGCYC	2 cut(s)	237, 552
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	462
Eco53kI	GAGCTC	2 cut(s)	235, 550
Eco57I	CTGAAG	1 cut(s)	392
EcoICRI	GAGCTC	2 cut(s)	235, 550
EcoT38I	GRGCYC	2 cut(s)	237, 552
FaeI	CATG	2 cut(s)	584, 669
FaiI	YATR	6 cut(s)	195, 411, 482, 582, 608, 667
FatI	CATG	2 cut(s)	580, 665
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	48, 68, 380
FokI	GGATG	4 cut(s)	152, 293, 553, 602
FriOI	GRGCYC	2 cut(s)	237, 552
Fsp4HI	GCNGC	3 cut(s)	48, 68, 380
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	3 cut(s)	48, 68, 380
GsuI	CTGGAG	2 cut(s)	135, 566
HaeIII	GGCC	2 cut(s)	67, 215
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	2 cut(s)	584, 669
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	2 cut(s)	250, 657
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	293, 466, 487, 554
Hpy188III	TCNNGA	5 cut(s)	152, 173, 247, 262, 433
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	314, 509
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	284, 346, 580, 598, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 343, 515
HpyF3I	CTNAG	3 cut(s)	236, 290, 519
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	584, 669
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	3 cut(s)	429, 441, 501
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	4 cut(s)	154, 261, 547, 555
LpnPI	CCDG	4 cut(s)	165, 197, 418, 530
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	271, 531
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	81
MalI	GATC	3 cut(s)	431, 443, 503
MbiI	CCGCTC	2 cut(s)	70, 256
MboI	GATC	3 cut(s)	429, 441, 501
MboII	GAAGA	7 cut(s)	27, 86, 155, 167, 385, 626, 634
MhlI	GDGCHC	3 cut(s)	237, 552, 648
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	304, 365
MluI	ACGCGT	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	215
Mox20I	TGGCCA	1 cut(s)	215
MroXI	GAANNNNTTC	2 cut(s)	22, 159
MscI	TGGCCA	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	215
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	56, 343, 515
NdeII	GATC	3 cut(s)	429, 441, 501
NlaIII	CATG	2 cut(s)	584, 669
NspI	RCATGY	2 cut(s)	584, 669
PciSI	GCTCTTC	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 78, 180, 533
PdmI	GAANNNNTTC	2 cut(s)	22, 159
PfeI	GAWTC	2 cut(s)	250, 657
PkrI	GCNGC	3 cut(s)	49, 69, 381
Psp124BI	GAGCTC	2 cut(s)	237, 552
PspPI	GGNCC	2 cut(s)	65, 462
Rsr2I	CGGWCCG	1 cut(s)	462
RsrII	CGGWCCG	1 cut(s)	462
SacI	GAGCTC	2 cut(s)	237, 552
SapI	GCTCTTC	1 cut(s)	609
SatI	GCNGC	3 cut(s)	48, 68, 380
Sau3AI	GATC	3 cut(s)	429, 441, 501
Sau96I	GGNCC	2 cut(s)	65, 462
SduI	GDGCHC	3 cut(s)	237, 552, 648
SetI	ASST	8 cut(s)	24, 84, 151, 213, 223, 237, 384, 552
SfaNI	GCATC	2 cut(s)	271, 531
SinI	GGWCC	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	260, 383
SmoI	CTYRAG	2 cut(s)	260, 383
Sse9I	AATT	2 cut(s)	304, 365
SsiI	CCGC	6 cut(s)	31, 47, 68, 254, 272, 455
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	2 cut(s)	237, 552
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	7 cut(s)	72, 109, 174, 246, 309, 399, 536
TaqII	GACCGA	2 cut(s)	371, 450
TasI	AATT	2 cut(s)	304, 365
TauI	GCSGC	2 cut(s)	50, 70
TfiI	GAWTC	2 cut(s)	250, 657
TseI	GCWGC	1 cut(s)	379
TspGWI	ACGGA	2 cut(s)	650, 669
VpaK11BI	GGWCC	1 cut(s)	462
XceI	RCATGY	2 cut(s)	584, 669
XmnI	GAANNNNTTC	2 cut(s)	22, 159
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.