Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006781.1

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 677

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

gaaagtttccagtcgcggcgagaccgtggcggcgaatcacaaatcatcaagcaccgacttctcacccgcaccaccatcacaagaggcgaaccgccgttgaaaaagctccagaagaagttcacctccctcttcgtcgagctcgacaactacgccgactgcgacaagctcgccagagccttccttcaagagctctccaccttcgagattcccctcctcaatagcaaagcgtttgtggacgccaatctgagagagaagcacaacttcgatgagctgcgggaggagattaaccagcagattctgcatgcgcagaccgacagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

106

Amino Acids

12.39

Weight (kDa)

7.12

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	306
AccII	CGCG	1 cut(s)	16
AciI	CCGC	5 cut(s)	16, 30, 67, 92, 274
AcyI	GRCGYC	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	100, 185
AluBI	AGCT	6 cut(s)	106, 139, 166, 190, 271, 318
AluI	AGCT	6 cut(s)	106, 139, 166, 190, 271, 318
Alw21I	GWGCWC	2 cut(s)	141, 192
Alw26I	GTCTC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	55, 112
BanII	GRGCYC	2 cut(s)	141, 192
Bbv12I	GWGCWC	2 cut(s)	141, 192
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	15
BisI	GCNGC	3 cut(s)	17, 31, 272
BlsI	GCNGC	3 cut(s)	18, 32, 273
BpmI	CTGGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	203, 293
BseXI	GCAGC	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	141, 192
BsmAI	GTCTC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	141, 192
BspACI	CCGC	5 cut(s)	16, 30, 67, 92, 274
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	168, 303
BstDEI	CTNAG	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	305
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	168, 303
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	1 cut(s)	307
CseI	GACGC	1 cut(s)	245
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	7 cut(s)	106, 139, 166, 176, 190, 271, 318
CviKI_1	RGCY	7 cut(s)	106, 139, 166, 176, 190, 271, 318
DdeI	CTNAG	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Ecl136II	GAGCTC	2 cut(s)	139, 190
Eco24I	GRGCYC	2 cut(s)	141, 192
Eco31I	GGTCTC	1 cut(s)	15
Eco53kI	GAGCTC	2 cut(s)	139, 190
EcoICRI	GAGCTC	2 cut(s)	139, 190
EcoT38I	GRGCYC	2 cut(s)	141, 192
FaeI	CATG	1 cut(s)	305
FaiI	YATR	1 cut(s)	303
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	1 cut(s)	301
FauI	CCCGC	2 cut(s)	74, 267
Fnu4HI	GCNGC	3 cut(s)	17, 31, 272
FriOI	GRGCYC	2 cut(s)	141, 192
Fsp4HI	GCNGC	3 cut(s)	17, 31, 272
FspI	TGCGCA	1 cut(s)	306
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	3 cut(s)	17, 31, 272
GsuI	CTGGAG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	3 cut(s)	35, 205, 295
HphI	GGTGA	2 cut(s)	55, 112
Hpy166II	GTNNAC	2 cut(s)	120, 235
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	3 cut(s)	109, 185, 202
Hpy8I	GTNNAC	2 cut(s)	120, 235
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	187, 191, 208
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	1 cut(s)	245
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	1 cut(s)	305
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	4 cut(s)	23, 122, 184, 302
Lsp1109I	GCAGC	1 cut(s)	258
MboII	GAAGA	2 cut(s)	121, 124
MhlI	GDGCHC	2 cut(s)	141, 192
MnlI	CCTC	6 cut(s)	77, 133, 137, 221, 224, 271
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	285
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	305
NsbI	TGCGCA	1 cut(s)	306
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 156
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	35, 205, 295
PkrI	GCNGC	3 cut(s)	18, 32, 273
Psp124BI	GAGCTC	2 cut(s)	141, 192
PstNI	CAGNNNCTG	1 cut(s)	298
SacI	GAGCTC	2 cut(s)	141, 192
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	17, 31, 272
SduI	GDGCHC	2 cut(s)	141, 192
SetI	ASST	8 cut(s)	108, 125, 141, 168, 192, 200, 273, 320
SphI	GCATGC	1 cut(s)	305
SsiI	CCGC	5 cut(s)	16, 30, 67, 92, 274
SstI	GAGCTC	2 cut(s)	141, 192
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	4 cut(s)	135, 141, 201, 264
TauI	GCSGC	2 cut(s)	19, 33
TfiI	GAWTC	3 cut(s)	35, 205, 295
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	1 cut(s)	271
XceI	RCATGY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.