Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

26786359 .. 26787480

Gene Structure 1122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1125800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTGGCGAAAGGAAGAAAAGCTTCAGGGCGAGGAGAGGCCGTGGCGCCGAACTACGCGTTCGGGCCGCTCGAAGATGACGTCATCATCAAACACAGACTTCTCACACGGACCACCACCACCACGAGAGGCGAACCGCCGTTGAAGAAGCTCCAGAAGAAATTCACTTCCCTGTTCGTTGAGCTCGACAAGAACGAAGACAACTTCACCGACTGCGACAGGCTCGCCAAGGCTTTCCTGCAGGTGCTCAACACGTTCGAGATTCCGCTCCTAAAGAGCAAAGCCGTCGTGGATGCAAATCTCCGGGAGAAGCACAATTTCGATGAGCTGAGGGAGGAGATTAACCGGCAGATTGTACAGGCGAAGACTGACATTCAGATACTGAAGAAGCAGCTCGAATTTCAATTTGCTTATCTCCATGTCTTGTTCAATGCCATTAGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

149

Amino Acids

16.97

Weight (kDa)

9.21

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THOC7	PF05615	27 - 133	1.2e-20	Tho complex subunit 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
AatII	GACGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	46
AccBSI	CCGCTC	2 cut(s)	70, 268
AccII	CGCG	1 cut(s)	59
AciI	CCGC	3 cut(s)	68, 137, 266
AcsI	RAATTY	2 cut(s)	161, 398
AcuI	CTGAAG	2 cut(s)	9, 404
AcyI	GRCGYC	2 cut(s)	47, 81
AfaI	GTAC	1 cut(s)	357
AflIII	ACRYGT	2 cut(s)	57, 252
AgsI	TTSAA	3 cut(s)	145, 404, 430
AluBI	AGCT	5 cut(s)	23, 151, 184, 328, 394
AluI	AGCT	5 cut(s)	23, 151, 184, 328, 394
Alw21I	GWGCWC	2 cut(s)	186, 249
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	2 cut(s)	39, 65
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	2 cut(s)	161, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
Asp700I	GAANNNNTTC	2 cut(s)	22, 161
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	65, 111
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	186
BauI	CACGAG	1 cut(s)	124
BbsI	GAAGAC	2 cut(s)	204, 371
Bbv12I	GWGCWC	2 cut(s)	186, 249
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	403
BceAI	ACGGC	3 cut(s)	26, 124, 269
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BcnI	CCSGG	1 cut(s)	305
BfaI	CTAG	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	68, 392
BlsI	GCNGC	2 cut(s)	69, 393
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	65, 111
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	204, 371
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	47, 81
BsaJI	CCNNGG	2 cut(s)	42, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse118I	RCCGGY	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	42, 228
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	2 cut(s)	48, 350
BseXI	GCAGC	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	41, 67
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	186, 249
BsiSI	CCGG	2 cut(s)	304, 346
BsnI	GGCC	2 cut(s)	41, 67
Bsp1286I	GDGCHC	2 cut(s)	186, 249
Bsp1407I	TGTACA	1 cut(s)	355
BspACI	CCGC	3 cut(s)	68, 137, 266
BspANI	GGCC	2 cut(s)	41, 67
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	46
BsrBI	CCGCTC	2 cut(s)	70, 268
BsrFI	RCCGGY	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	42, 228
BssNI	GRCGYC	2 cut(s)	47, 81
BssSI	CACGAG	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	124
BstACI	GRCGYC	2 cut(s)	47, 81
BstAUI	TGTACA	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	6, 225
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	239
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	2 cut(s)	204, 371
BsuRI	GGCC	2 cut(s)	41, 67
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	6, 225
CaiI	CAGNNNCTG	1 cut(s)	382
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	65, 111
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	1 cut(s)	419
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	329
DinI	GGCGCC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	2 cut(s)	9, 404
EcoICRI	GAGCTC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	186
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	422
FaiI	YATR	1 cut(s)	420
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	68, 392
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	68, 392
FspBI	CTAG	1 cut(s)	445
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	68, 392
GsuI	CTGGAG	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	41, 67
HapII	CCGG	2 cut(s)	304, 346
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	2 cut(s)	47, 81
Hin1II	CATG	1 cut(s)	422
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	2 cut(s)	304, 346
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	2 cut(s)	154, 259
Hpy99I	CGWCG	1 cut(s)	290
HpyCH4IV	ACGT	2 cut(s)	81, 254
HpyCH4V	TGCA	2 cut(s)	241, 296
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	2 cut(s)	81, 254
Hsp92I	GRCGYC	2 cut(s)	47, 81
Hsp92II	CATG	1 cut(s)	422
HspAI	GCGC	1 cut(s)	47
KasI	GGCGCC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	156, 273
LpnPI	CCDG	9 cut(s)	12, 167, 185, 205, 227, 251, 317, 344, 359
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	445
MaeII	ACGT	2 cut(s)	81, 254
MbiI	CCGCTC	2 cut(s)	70, 268
MboII	GAAGA	7 cut(s)	27, 86, 157, 169, 209, 376, 397
MhlI	GDGCHC	2 cut(s)	186, 249
MluCI	AATT	4 cut(s)	161, 316, 398, 404
MluI	ACGCGT	1 cut(s)	57
Mly113I	GGCGCC	1 cut(s)	47
MnlI	CCTC	5 cut(s)	26, 31, 122, 324, 328
MroXI	GAANNNNTTC	2 cut(s)	22, 161
MseI	TTAA	1 cut(s)	342
MspI	CCGG	2 cut(s)	304, 346
MspR9I	CCNGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	59
NarI	GGCGCC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	305
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	1 cut(s)	48
PaqCI	CACCTGC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 78, 183, 192
PdmI	GAANNNNTTC	2 cut(s)	22, 161
PfeI	GAWTC	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	69, 393
PluTI	GGCGCC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	65, 111
PstI	CTGCAG	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	68, 392
Sau96I	GGNCC	2 cut(s)	65, 111
SbfI	CCTGCAGG	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	305
SdaI	CCTGCAGG	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	186, 249
SetI	ASST	8 cut(s)	25, 84, 153, 186, 246, 257, 330, 396
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	239
SfoI	GGCGCC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	111
Sse8387I	CCTGCAGG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	161, 316, 398, 404
SsiI	CCGC	3 cut(s)	68, 137, 266
SspDI	GGCGCC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	445
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	2 cut(s)	84, 257
TaqI	TCGA	5 cut(s)	72, 186, 258, 321, 396
TasI	AATT	4 cut(s)	161, 316, 398, 404
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	391
TspGWI	ACGGA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	2 cut(s)	161, 398
XmnI	GAANNNNTTC	2 cut(s)	22, 161
XspI	CTAG	1 cut(s)	445
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.