Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00998

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

21393 .. 26747

Gene Structure 5355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCAAAGACCTGCATCTGGACCACTTTACATCAGCTGTCGTAGCTGATTCCATTGCCAGACTATTAGAGTTTTTAGGAGTCCAAGTTCTTAGAAGGAAGGAAAGTTTCCGGTCGCGGCGAGACCGTGGCGGCGAATCACAAATCATCAAGCACCGACTTCTCACCCGCACCACCATCACAAGAGGCGAACCGCCGTTGAAAAAGCTCCAGAAGAAGTTCACCTCCCTCTTCGTCGAGCTCGACAACTACGCCGACTGCGACAAGCTCGCCAGAGCCTTCCTTCAAGAGCTCTCCACCTTCGAGATTCCCCTCCTCAATAGCAAAGCGTTTGTGGACGCCAATCTGAGAGAGAAGCACAACTTCGATGAGCTGCGGGAGGAGATTAACCAGCAGATTCTGCATGCGCAGACCGACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

140

Amino Acids

16.25

Weight (kDa)

8.79

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THOC7	PF05615	48 - 138	2.6e-16	Tho complex subunit 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	21
AccII	CGCG	1 cut(s)	118
AciI	CCGC	5 cut(s)	118, 132, 169, 194, 376
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	202, 287
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	8 cut(s)	38, 47, 208, 241, 268, 292, 373, 420
AluI	AGCT	8 cut(s)	38, 47, 208, 241, 268, 292, 373, 420
Alw21I	GWGCWC	2 cut(s)	243, 294
Alw26I	GTCTC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	157, 214
AvaII	GGWCC	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	243, 294
Bbv12I	GWGCWC	2 cut(s)	243, 294
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	21
BisI	GCNGC	3 cut(s)	119, 133, 374
BlsI	GCNGC	3 cut(s)	120, 134, 375
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmsI	GCATC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	338
BseRI	GAGGAG	2 cut(s)	305, 395
BseXI	GCAGC	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	118
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	243, 294
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	243, 294
BspACI	CCGC	5 cut(s)	118, 132, 169, 194, 376
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	270, 405
BstDEI	CTNAG	2 cut(s)	92, 347
BstDSI	CCRYGG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	117
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 400
BstNSI	RCATGY	1 cut(s)	407
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	270, 405
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	22
CseI	GACGC	1 cut(s)	347
CviAII	CATG	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	92, 347
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	2 cut(s)	241, 292
Eco24I	GRGCYC	2 cut(s)	243, 294
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	241, 292
EcoICRI	GAGCTC	2 cut(s)	241, 292
EcoT38I	GRGCYC	2 cut(s)	243, 294
FaeI	CATG	1 cut(s)	407
FaiI	YATR	1 cut(s)	405
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	1 cut(s)	403
FauI	CCCGC	2 cut(s)	176, 369
Fnu4HI	GCNGC	3 cut(s)	119, 133, 374
FriOI	GRGCYC	2 cut(s)	243, 294
Fsp4HI	GCNGC	3 cut(s)	119, 133, 374
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	3 cut(s)	119, 133, 374
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	5 cut(s)	50, 81, 137, 307, 397
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	157, 214
Hpy166II	GTNNAC	2 cut(s)	222, 337
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	4 cut(s)	20, 211, 287, 304
Hpy8I	GTNNAC	2 cut(s)	222, 337
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	5 cut(s)	90, 94, 289, 293, 310
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	16, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 400
HpyF3I	CTNAG	2 cut(s)	92, 347
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	5, 26, 73, 125, 224, 286, 404
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	1 cut(s)	25
MboII	GAAGA	2 cut(s)	223, 226
MhlI	GDGCHC	2 cut(s)	243, 294
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	6 cut(s)	179, 235, 239, 323, 326, 373
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	44, 400
NlaIII	CATG	1 cut(s)	407
NsbI	TGCGCA	1 cut(s)	408
NspI	RCATGY	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 258
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	4 cut(s)	50, 137, 307, 397
PkrI	GCNGC	3 cut(s)	120, 134, 375
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp124BI	GAGCTC	2 cut(s)	243, 294
PspPI	GGNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	38
SacI	GAGCTC	2 cut(s)	243, 294
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	119, 133, 374
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	243, 294
SfaNI	GCATC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	22
SphI	GCATGC	1 cut(s)	407
SsiI	CCGC	5 cut(s)	118, 132, 169, 194, 376
SstI	GAGCTC	2 cut(s)	243, 294
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	4 cut(s)	237, 243, 303, 366
TauI	GCSGC	2 cut(s)	121, 135
TfiI	GAWTC	4 cut(s)	50, 137, 307, 397
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseI	GCWGC	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	22
XceI	RCATGY	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.