Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

31398400 .. 31402161

Gene Structure 3762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTGGGAAAGGGAAGGAAAGTTTCCGGTCGCGGCGAGACCGTGGCGGCGAACTACGCGTTTGGGCCGCATGAAGACGACATAATCATCAAGCACCGACTTCTCACCCGCACCACCACCACAAGAGGCGAACCGCCATTGAAGAAGCTCCAGAAGAAGTTCACTTCCCTCTTCGTCGAGCTCGACAAGGACGATGACAACTACGCCGACTGCGACAAGCTCGCCAGAGCCTTCCTTCAAGAGCTCTCCACCTTCGAGATTCCCCTCCTCAAGAGCAAGGCGGTCGTTGACGCCAATCTGAGAGAGAAGCACAACTTCGATGAGCTGCGGGAGGAGATTAACCGGCAGATTCTGCAGGCGCAGACCGACATTGAATCGCTTAAGAAGCAACTGGAGGAGGCTAAGATCGAGAGGCGGCATAAGGAGGAGTGCGAGGCCATTCGGAGGTTGATTGCTATGCAGCCGCCTCGGTCTCAGACGCTCAAGATCATATCGGATTTGGAGAAGGAGATTGCGGCTTTGGATTCAGAGAATACTGCCAGTTCAAGGATGCTGGAGCTTCGTAAGAAGCAGTTTGCTCTGCTCTTACATGTGGTGGATGAGTTGCAGACTACTATAGAGGAAGAGCAGAAGAGGTGTACAATGCATCTCGGATTTATAATTGTGGATGAGTTGCAGGCTACCACAGAGGGAGAGCAGAAGAATTTAATTGAGGAGAAAGAGCACAAGTATGCACTGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

249

Amino Acids

28.69

Weight (kDa)

5.91

Isoelectric Point (pI)

61.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THOC7	PF05615	27 - 162	1.2e-33	Tho complex subunit 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AccII	CGCG	2 cut(s)	33, 59
AcsI	RAATTY	1 cut(s)	703
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	2 cut(s)	444, 546
AflII	CTTAAG	1 cut(s)	380
AflIII	ACRYGT	2 cut(s)	57, 589
AgsI	TTSAA	4 cut(s)	142, 239, 374, 546
AluBI	AGCT	6 cut(s)	148, 181, 220, 244, 325, 559
AluI	AGCT	6 cut(s)	148, 181, 220, 244, 325, 559
Alw21I	GWGCWC	3 cut(s)	183, 246, 726
Alw26I	GTCTC	2 cut(s)	32, 477
AlwNI	CAGNNNCTG	1 cut(s)	352
AoxI	GGCC	2 cut(s)	65, 435
ApeKI	GCWGC	2 cut(s)	325, 460
ApoI	RAATTY	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	183, 246
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	3 cut(s)	183, 246, 726
BbvI	GCAGC	2 cut(s)	312, 472
BcgI	CGANNNNNNTGC	4 cut(s)	265, 299, 449, 483
BcoDI	GTCTC	2 cut(s)	32, 477
BfmI	CTRYAG	2 cut(s)	353, 615
BfrI	CTTAAG	1 cut(s)	380
BisI	GCNGC	8 cut(s)	34, 48, 68, 326, 416, 461, 464, 516
BlsI	GCNGC	8 cut(s)	35, 49, 69, 327, 417, 462, 465, 517
BmgT120I	GGNCC	1 cut(s)	65
BmsI	GCATC	2 cut(s)	540, 655
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	3 cut(s)	134, 413, 575
BpuEI	CTTGAG	2 cut(s)	254, 467
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	2 cut(s)	32, 477
BsaJI	CCNNGG	2 cut(s)	42, 467
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 546
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	3 cut(s)	396, 540, 741
BseDI	CCNNGG	2 cut(s)	42, 467
BseGI	GGATG	3 cut(s)	555, 604, 673
BseLI	CCNNNNNNNGG	2 cut(s)	444, 546
BseMII	CTCAG	2 cut(s)	290, 488
BseNI	ACTGG	3 cut(s)	396, 540, 741
BseRI	GAGGAG	5 cut(s)	257, 347, 410, 440, 728
BseXI	GCAGC	2 cut(s)	312, 472
Bsh1236I	CGCG	2 cut(s)	33, 59
Bsh1285I	CGRYCG	2 cut(s)	31, 285
BshFI	GGCC	2 cut(s)	67, 437
BsiEI	CGRYCG	2 cut(s)	31, 285
BsiHKAI	GWGCWC	3 cut(s)	183, 246, 726
BsiSI	CCGG	2 cut(s)	27, 343
BslI	CCNNNNNNNGG	2 cut(s)	444, 546
BsmAI	GTCTC	2 cut(s)	32, 477
BsnI	GGCC	2 cut(s)	67, 437
Bso31I	GGTCTC	2 cut(s)	32, 477
Bsp1286I	GDGCHC	3 cut(s)	183, 246, 726
Bsp1407I	TGTACA	1 cut(s)	638
Bsp143I	GATC	2 cut(s)	405, 486
BspANI	GGCC	2 cut(s)	67, 437
BspCNI	CTCAG	2 cut(s)	291, 487
BspFNI	CGCG	2 cut(s)	33, 59
BspMAI	CTGCAG	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	618
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	2 cut(s)	32, 477
BsrFI	RCCGGY	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	638
BsrI	ACTGG	3 cut(s)	396, 540, 741
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	42, 467
BssMI	GATC	2 cut(s)	405, 486
BssNI	GRCGYC	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	3 cut(s)	176, 618, 626
BstACI	GRCGYC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	638
BstC8I	GCNNGC	3 cut(s)	222, 357, 678
BstDEI	CTNAG	3 cut(s)	299, 402, 474
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	555, 604, 673
BstFNI	CGCG	2 cut(s)	33, 59
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	2 cut(s)	408, 489
BstMAI	GTCTC	2 cut(s)	32, 477
BstMBI	GATC	2 cut(s)	405, 486
BstMCI	CGRYCG	2 cut(s)	31, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 352, 385
BstNSI	RCATGY	1 cut(s)	593
BstSFI	CTRYAG	2 cut(s)	353, 615
BstUI	CGCG	2 cut(s)	33, 59
BstV1I	GCAGC	2 cut(s)	312, 472
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	67, 437
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	555, 604, 673
BtsIMutI	CAGTG	1 cut(s)	734
Cac8I	GCNNGC	3 cut(s)	222, 357, 678
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	2 cut(s)	299, 487
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	2 cut(s)	71, 590
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	3 cut(s)	299, 402, 474
DpnI	GATC	2 cut(s)	407, 488
DpnII	GATC	2 cut(s)	405, 486
Eam1104I	CTCTTC	3 cut(s)	176, 618, 626
EarI	CTCTTC	3 cut(s)	176, 618, 626
Ecl136II	GAGCTC	2 cut(s)	181, 244
Eco24I	GRGCYC	2 cut(s)	183, 246
Eco31I	GGTCTC	2 cut(s)	32, 477
Eco53kI	GAGCTC	2 cut(s)	181, 244
EcoICRI	GAGCTC	2 cut(s)	181, 244
EcoT22I	ATGCAT	1 cut(s)	648
EcoT38I	GRGCYC	2 cut(s)	183, 246
FaeI	CATG	2 cut(s)	74, 593
FaiI	YATR	9 cut(s)	72, 83, 420, 458, 491, 591, 617, 659, 732
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	2 cut(s)	70, 589
FauI	CCCGC	2 cut(s)	116, 321
Fnu4HI	GCNGC	8 cut(s)	34, 48, 68, 326, 416, 461, 464, 516
FokI	GGATG	3 cut(s)	562, 611, 680
FriOI	GRGCYC	2 cut(s)	183, 246
Fsp4HI	GCNGC	8 cut(s)	34, 48, 68, 326, 416, 461, 464, 516
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	8 cut(s)	34, 48, 68, 326, 416, 461, 464, 516
GsuI	CTGGAG	3 cut(s)	134, 413, 575
HaeIII	GGCC	2 cut(s)	67, 437
HapII	CCGG	2 cut(s)	27, 343
HgaI	GACGC	2 cut(s)	299, 487
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	74, 593
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	4 cut(s)	259, 349, 374, 524
HpaII	CCGG	2 cut(s)	27, 343
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	3 cut(s)	162, 289, 639
Hpy188I	TCNGA	6 cut(s)	300, 444, 477, 496, 529, 653
Hpy188III	TCNNGA	6 cut(s)	151, 239, 256, 271, 409, 484
Hpy8I	GTNNAC	3 cut(s)	162, 289, 639
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	5 cut(s)	9, 241, 245, 262, 499
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	6 cut(s)	355, 460, 607, 646, 676, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 352, 385
HpyF3I	CTNAG	3 cut(s)	299, 402, 474
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	74, 593
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	405, 486
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	2 cut(s)	153, 556
Lsp1109I	GCAGC	2 cut(s)	312, 472
LweI	GCATC	2 cut(s)	540, 655
MalI	GATC	2 cut(s)	407, 488
MboI	GATC	2 cut(s)	405, 486
MboII	GAAGA	7 cut(s)	86, 154, 163, 166, 635, 643, 712
MhlI	GDGCHC	3 cut(s)	183, 246, 726
MluCI	AATT	3 cut(s)	660, 703, 708
MluI	ACGCGT	1 cut(s)	57
Mph1103I	ATGCAT	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	3 cut(s)	339, 381, 707
MslI	CAYNNNNRTG	1 cut(s)	729
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	2 cut(s)	27, 343
MvnI	CGCG	2 cut(s)	33, 59
MwoI	GCNNNNNNNGC	3 cut(s)	56, 352, 385
NdeII	GATC	2 cut(s)	405, 486
NlaIII	CATG	2 cut(s)	74, 593
NsiI	ATGCAT	1 cut(s)	648
NspI	RCATGY	1 cut(s)	593
PciI	ACATGT	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	3 cut(s)	180, 189, 210
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	4 cut(s)	259, 349, 374, 524
PkrI	GCNGC	8 cut(s)	35, 49, 69, 327, 417, 462, 465, 517
PscI	ACATGT	1 cut(s)	589
PsiI	TTATAA	1 cut(s)	659
Psp124BI	GAGCTC	2 cut(s)	183, 246
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	729
SacI	GAGCTC	2 cut(s)	183, 246
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	339, 381, 707
SatI	GCNGC	8 cut(s)	34, 48, 68, 326, 416, 461, 464, 516
Sau3AI	GATC	2 cut(s)	405, 486
Sau96I	GGNCC	1 cut(s)	65
SduI	GDGCHC	3 cut(s)	183, 246, 726
SetI	ASST	9 cut(s)	150, 183, 222, 246, 254, 327, 449, 561, 638
SfaNI	GCATC	2 cut(s)	540, 655
SfcI	CTRYAG	2 cut(s)	353, 615
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	3 cut(s)	269, 380, 482
SmoI	CTYRAG	3 cut(s)	269, 380, 482
Sse9I	AATT	3 cut(s)	660, 703, 708
SstI	GAGCTC	2 cut(s)	183, 246
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	5 cut(s)	177, 183, 255, 318, 408
TaqII	GACCGA	2 cut(s)	380, 459
TasI	AATT	3 cut(s)	660, 703, 708
TatI	WGTACW	1 cut(s)	638
TauI	GCSGC	6 cut(s)	36, 50, 70, 418, 466, 518
TfiI	GAWTC	4 cut(s)	259, 349, 374, 524
Tru1I	TTAA	3 cut(s)	339, 381, 707
Tru9I	TTAA	3 cut(s)	339, 381, 707
TscAI	CASTG	1 cut(s)	741
TseI	GCWGC	2 cut(s)	325, 460
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	741
Vha464I	CTTAAG	1 cut(s)	380
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.