Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Forward (+)

2477578 .. 2479135

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G027200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTGGTAAAAGGAAGAAAGGTTTCTGGGCGGGGAGAGGCCGTGGCGGCGAACTACGCGTTCGGGCCGCTCGAAGATGACGTAATCATCAAGCACAGACTTCTCACTCGAACCACAACCACAAGAGGCGAACCCCCATTGAAGAAGCTCCAGAAGAAGTTCACATCCCTGTTCGTCGAGCTCGACAAGAACGAGGACAACTATGGCGACTGCGACAAGCTGGCCAAAGCTTTCCTCCAAGAGCTCAGCACCTTCGAGATTCCGCTCCTCAAGAGCAAAGCGCTACGCAACTGCCTCGAAACGCTCAAAATCATATCCGATTTGGAGAAAGAGATTGCCGCTTTGGACGCTGAGAACACGGCAAGTTCGAGGATGCTGGAGCTCCGAAAGAAGCAGTTTGCTCTGCTGTTGTATGTGGTGGATGAGTTGCAGAACACCATAGAGGAAGAGCAGAAGAGTTTGGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

157

Amino Acids

17.67

Weight (kDa)

5.99

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	70, 265
AccII	CGCG	1 cut(s)	59
AciI	CCGC	5 cut(s)	31, 47, 68, 263, 339
AcoI	YGGCCR	1 cut(s)	222
AfeI	AGCGCT	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	6 cut(s)	148, 181, 220, 230, 244, 382
AluI	AGCT	6 cut(s)	148, 181, 220, 230, 244, 382
Alw21I	GWGCWC	3 cut(s)	183, 246, 384
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	3 cut(s)	39, 65, 222
Asp700I	GAANNNNTTC	2 cut(s)	22, 158
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	224
BanII	GRGCYC	3 cut(s)	183, 246, 384
Bbv12I	GWGCWC	3 cut(s)	183, 246, 384
BceAI	ACGGC	2 cut(s)	26, 375
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BfoI	RGCGCY	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	48, 68, 339
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	3 cut(s)	49, 69, 340
BmgT120I	GGNCC	1 cut(s)	65
BmsI	GCATC	1 cut(s)	363
BpmI	CTGGAG	2 cut(s)	134, 398
Bpu1102I	GCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	164, 378, 427
BseMII	CTCAG	2 cut(s)	259, 342
BseRI	GAGGAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	41, 67, 224
BsiHKAI	GWGCWC	3 cut(s)	183, 246, 384
BsnI	GGCC	3 cut(s)	41, 67, 224
Bsp1286I	GDGCHC	3 cut(s)	183, 246, 384
Bsp1720I	GCTNAGC	1 cut(s)	245
BspACI	CCGC	5 cut(s)	31, 47, 68, 263, 339
BspANI	GGCC	3 cut(s)	41, 67, 224
BspCNI	CTCAG	2 cut(s)	258, 343
BspFNI	CGCG	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	441
BsrBI	CCGCTC	2 cut(s)	70, 265
BssECI	CCNNGG	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	441, 449
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	245, 351
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	164, 378, 427
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 347
BstUI	CGCG	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	41, 67, 224
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	164, 378, 427
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	356
CviJI	RGCY	9 cut(s)	41, 67, 148, 181, 220, 224, 230, 244, 382
CviKI_1	RGCY	9 cut(s)	41, 67, 148, 181, 220, 224, 230, 244, 382
DdeI	CTNAG	2 cut(s)	245, 351
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	441, 449
EarI	CTCTTC	2 cut(s)	441, 449
Ecl136II	GAGCTC	3 cut(s)	181, 244, 382
Eco24I	GRGCYC	3 cut(s)	183, 246, 384
Eco47III	AGCGCT	1 cut(s)	282
Eco53kI	GAGCTC	3 cut(s)	181, 244, 382
EcoICRI	GAGCTC	3 cut(s)	181, 244, 382
EcoT38I	GRGCYC	3 cut(s)	183, 246, 384
FaiI	YATR	4 cut(s)	204, 314, 414, 440
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	48, 68, 339
FokI	GGATG	3 cut(s)	151, 385, 434
FriOI	GRGCYC	3 cut(s)	183, 246, 384
Fsp4HI	GCNGC	3 cut(s)	48, 68, 339
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	3 cut(s)	48, 68, 339
GsuI	CTGGAG	2 cut(s)	134, 398
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	41, 67, 224
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	319, 386
Hpy188III	TCNNGA	3 cut(s)	151, 256, 271
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 347
HpyF3I	CTNAG	2 cut(s)	245, 351
HpySE526I	ACGT	1 cut(s)	81
HspAI	GCGC	1 cut(s)	281
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	4 cut(s)	153, 270, 379, 387
LpnPI	CCDG	5 cut(s)	12, 164, 182, 206, 362
LweI	GCATC	1 cut(s)	363
MaeII	ACGT	1 cut(s)	81
MbiI	CCGCTC	2 cut(s)	70, 265
MboII	GAAGA	6 cut(s)	27, 86, 154, 166, 458, 466
MhlI	GDGCHC	3 cut(s)	183, 246, 384
MlsI	TGGCCA	1 cut(s)	224
MluI	ACGCGT	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	224
MnlI	CCTC	8 cut(s)	31, 119, 187, 245, 278, 305, 363, 436
Mox20I	TGGCCA	1 cut(s)	224
MroXI	GAANNNNTTC	2 cut(s)	22, 158
MscI	TGGCCA	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	224
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 347
PciSI	GCTCTTC	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	5 cut(s)	69, 78, 180, 189, 365
PdmI	GAANNNNTTC	2 cut(s)	22, 158
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	49, 69, 340
Psp124BI	GAGCTC	3 cut(s)	183, 246, 384
PspPI	GGNCC	1 cut(s)	65
SacI	GAGCTC	3 cut(s)	183, 246, 384
SapI	GCTCTTC	1 cut(s)	441
SatI	GCNGC	3 cut(s)	48, 68, 339
Sau96I	GGNCC	1 cut(s)	65
SduI	GDGCHC	3 cut(s)	183, 246, 384
SetI	ASST	9 cut(s)	24, 84, 150, 183, 222, 232, 246, 254, 384
SfaNI	GCATC	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SsiI	CCGC	5 cut(s)	31, 47, 68, 263, 339
SstI	GAGCTC	3 cut(s)	183, 246, 384
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	7 cut(s)	72, 109, 177, 183, 255, 297, 368
TauI	GCSGC	3 cut(s)	50, 70, 341
TfiI	GAWTC	1 cut(s)	259
XmnI	GAANNNNTTC	2 cut(s)	22, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.