Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003869

Physical Location & Seq

Genomic Coordinates Reverse (-)

12301240 .. 12306413

Gene Structure 5174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCTCGGAAAGGGAAGGAAAGTTTCCGGTCGCGGCGAGACCGTGGCGGCGAACTACGCCTTTGGGCCGCACGAAGATGACGTAATCATCAAGCACCGCCTTCTCACCCGCACGACCACCACAAGAGGCGAACCGCCACTGAAGAAGCTCCAGAAGAAGTTCACCTCCCTCTTCGTCGAGCTCGACAAGGACGACGACGACAACCACGCCGACTGCGAGAAGCTCGCCAAGGCTTTCCTGCAGGAGCTCTCCACCTTCGAGATCCCTCTCCTGAAGAGCAAGGCGGTTGTGGATGCGAATCTGAGAGAGAAGCACAACTTCGATGAGCTGAGGGAGGAGATCAACCGGCAGATTCTGCAGGCGCAGAATGACATTGAGACTCTGAAGAAGCAGCTGGAGGAGGCGAAGATTGAGAGGCGGCATAAGGAGGAGTGTGAGGCCATTCGGCGGTTGATTGCGATGCAGCCGCCGCGTTCTCAGACGCTGAAGATCATATCGGATTTGGAGAAGGAGATTGCGGCGTTGGATTCGGAGAATACGGCCAGTTCGAGGATGCTGGAGCTGAGGAAGAAGCAGTTTGCTCTGCTCTTACATGTGGTGGATGAGTTGCAGACTACTATAGAGGAAGAGCAGAAGAGTTTAATTGAGGAGAAGGAGCAGAGAAGTGGGATGGAGGATGCAAATGGAGGACCGGAACCAATGCATGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0000781 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0098687

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

THOC7

Protein Analysis

238

Amino Acids

27.19

Weight (kDa)

5.54

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THOC7	PF05615	27 - 163	3.6e-34	Tho complex subunit 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02950 AT3G02950 AT5G16790 AT5G16790
fragaria_vesca	FvH4_2g13990 FvH4_4g00100
malus_domestica	MD00G1125800.v1.1 MD05G1022700.v1.1 MD10G1023900.v1.1
prunus_persica	Prupe.8G026900_v2.0.a1 Prupe.8G026900_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027200_v2.0.a1 Prupe.8G027400_v2.0.a1
pyrus_communis	pycom10g01580 pycom11g17910
rosa_chinensis	RchiOBHm_Chr6g0275831
rosa_laevigata	RLG00000013429
rosa_multiflora	Rmu_sc0002030.1_g000025 Rmu_sc0006781.1_g000001 Rmu_sc0006781.1_g000002
rosa_roxburghii	Rroxscaffold_7G00192820
rosa_rugosa	Rorug06G0096300
rosa_samantha	Rh6AG208500 Rh6AG210200 Rh6BG211100 Rh6BG212500 Rh6CG214600 Rh6DG204500
rosa_wichuraiana	Rw0G021610 Rw0G021620 Rw6G018170 Rw6G018300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	33, 472
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	540
AcuI	CTGAAG	4 cut(s)	161, 293, 404, 506
AfiI	CCNNNNNNNGG	2 cut(s)	447, 549
AflIII	ACRYGT	1 cut(s)	592
AluBI	AGCT	7 cut(s)	148, 181, 223, 247, 328, 394, 562
AluI	AGCT	7 cut(s)	148, 181, 223, 247, 328, 394, 562
Alw21I	GWGCWC	2 cut(s)	183, 249
Alw26I	GTCTC	2 cut(s)	32, 371
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	2 cut(s)	355, 484
AoxI	GGCC	3 cut(s)	65, 438, 540
ApeKI	GCWGC	2 cut(s)	391, 463
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	65, 689
AsuHPI	GGTGA	2 cut(s)	97, 154
AvaII	GGWCC	1 cut(s)	689
BanII	GRGCYC	2 cut(s)	183, 249
Bbv12I	GWGCWC	2 cut(s)	183, 249
BbvCI	CCTCAGC	2 cut(s)	329, 563
BbvI	GCAGC	2 cut(s)	403, 475
BccI	CCATC	1 cut(s)	664
BceAI	ACGGC	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	32, 371
BfmI	CTRYAG	3 cut(s)	239, 356, 618
BisI	GCNGC	9 cut(s)	34, 48, 68, 392, 419, 464, 467, 470, 519
BlsI	GCNGC	9 cut(s)	35, 49, 69, 393, 420, 465, 468, 471, 520
Bme18I	GGWCC	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	65, 689
BmiI	GGNNCC	1 cut(s)	696
BmsI	GCATC	4 cut(s)	283, 450, 543, 667
BpmI	CTGGAG	3 cut(s)	134, 416, 578
Bpu10I	CCTNAGC	2 cut(s)	329, 563
BsaBI	GATNNNNATC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	42, 228
BsaWI	WCCGGW	2 cut(s)	26, 691
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 549
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	42, 228
BseGI	GGATG	5 cut(s)	298, 558, 607, 675, 682
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	447, 549
BseMII	CTCAG	4 cut(s)	293, 320, 491, 554
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	4 cut(s)	350, 413, 443, 662
BseXI	GCAGC	2 cut(s)	403, 475
Bsh1236I	CGCG	2 cut(s)	33, 472
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	67, 440, 542
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	183, 249
BsiSI	CCGG	3 cut(s)	27, 346, 692
BslI	CCNNNNNNNGG	2 cut(s)	447, 549
BsmAI	GTCTC	2 cut(s)	32, 371
BsnI	GGCC	3 cut(s)	67, 440, 542
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	183, 249
Bsp143I	GATC	3 cut(s)	261, 339, 489
BspANI	GGCC	3 cut(s)	67, 440, 542
BspCNI	CTCAG	4 cut(s)	294, 321, 490, 555
BspFNI	CGCG	2 cut(s)	33, 472
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	2 cut(s)	243, 360
BspPI	GGATC	1 cut(s)	256
BspQI	GCTCTTC	2 cut(s)	269, 621
BspTNI	GGTCTC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	543
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	42, 228
BssMI	GATC	3 cut(s)	261, 339, 489
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	4 cut(s)	176, 269, 621, 629
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	225, 360
BstDEI	CTNAG	4 cut(s)	302, 329, 477, 563
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	5 cut(s)	298, 558, 607, 675, 682
BstFNI	CGCG	2 cut(s)	33, 472
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	3 cut(s)	264, 342, 492
BstMAI	GTCTC	2 cut(s)	32, 371
BstMBI	GATC	3 cut(s)	261, 339, 489
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 355, 469
BstNSI	RCATGY	2 cut(s)	596, 707
BstSFI	CTRYAG	3 cut(s)	239, 356, 618
BstUI	CGCG	2 cut(s)	33, 472
BstV1I	GCAGC	2 cut(s)	403, 475
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	67, 440, 542
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	473
BtsCI	GGATG	5 cut(s)	298, 558, 607, 675, 682
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	225, 360
CaiI	CAGNNNCTG	2 cut(s)	355, 484
CfoI	GCGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	65, 689
CseI	GACGC	1 cut(s)	490
CviAII	CATG	2 cut(s)	593, 704
DdeI	CTNAG	4 cut(s)	302, 329, 477, 563
DpnI	GATC	3 cut(s)	263, 341, 491
DpnII	GATC	3 cut(s)	261, 339, 489
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	4 cut(s)	176, 269, 621, 629
EarI	CTCTTC	4 cut(s)	176, 269, 621, 629
Ecl136II	GAGCTC	2 cut(s)	181, 247
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	183, 249
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	689
Eco53kI	GAGCTC	2 cut(s)	181, 247
Eco57I	CTGAAG	4 cut(s)	161, 293, 404, 506
EcoICRI	GAGCTC	2 cut(s)	181, 247
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	705
EcoT38I	GRGCYC	2 cut(s)	183, 249
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	596, 707
FaiI	YATR	5 cut(s)	423, 494, 594, 620, 705
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	2 cut(s)	592, 703
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	9 cut(s)	34, 48, 68, 392, 419, 464, 467, 470, 519
FokI	GGATG	5 cut(s)	305, 565, 614, 682, 689
FriOI	GRGCYC	2 cut(s)	183, 249
Fsp4HI	GCNGC	9 cut(s)	34, 48, 68, 392, 419, 464, 467, 470, 519
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	9 cut(s)	34, 48, 68, 392, 419, 464, 467, 470, 519
GsuI	CTGGAG	3 cut(s)	134, 416, 578
HaeIII	GGCC	3 cut(s)	67, 440, 542
HapII	CCGG	3 cut(s)	27, 346, 692
HgaI	GACGC	1 cut(s)	490
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	596, 707
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HinfI	GANTC	4 cut(s)	298, 352, 379, 527
HpaII	CCGG	3 cut(s)	27, 346, 692
HphI	GGTGA	2 cut(s)	97, 154
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	6 cut(s)	8, 303, 384, 480, 499, 532
Hpy188III	TCNNGA	3 cut(s)	151, 259, 271
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	3 cut(s)	179, 197, 200
HpyAV	CCTTC	5 cut(s)	9, 110, 265, 502, 646
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	6 cut(s)	241, 358, 463, 610, 680, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 355, 469
HpyF3I	CTNAG	4 cut(s)	302, 329, 477, 563
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	596, 707
HspAI	GCGC	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	261, 339, 489
LguI	GCTCTTC	2 cut(s)	269, 621
LmnI	GCTCC	4 cut(s)	153, 244, 559, 655
Lsp1109I	GCAGC	2 cut(s)	403, 475
LweI	GCATC	4 cut(s)	283, 450, 543, 667
MaeII	ACGT	1 cut(s)	81
MalI	GATC	3 cut(s)	263, 341, 491
MboI	GATC	3 cut(s)	261, 339, 489
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	183, 249
MluCI	AATT	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	504
Mph1103I	ATGCAT	1 cut(s)	705
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	1 cut(s)	641
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	3 cut(s)	27, 346, 692
MvnI	CGCG	2 cut(s)	33, 472
MwoI	GCNNNNNNNGC	3 cut(s)	56, 355, 469
NdeII	GATC	3 cut(s)	261, 339, 489
NlaIII	CATG	2 cut(s)	596, 707
NlaIV	GGNNCC	1 cut(s)	696
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	2 cut(s)	596, 707
PciI	ACATGT	1 cut(s)	592
PciSI	GCTCTTC	2 cut(s)	269, 621
PcsI	WCGNNNNNNNCGW	5 cut(s)	78, 180, 189, 213, 545
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	298, 352, 527
PkrI	GCNGC	9 cut(s)	35, 49, 69, 393, 420, 465, 468, 471, 520
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	592
Psp124BI	GAGCTC	2 cut(s)	183, 249
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	2 cut(s)	65, 689
PstI	CTGCAG	2 cut(s)	243, 360
PstNI	CAGNNNCTG	2 cut(s)	355, 484
PsuI	RGATCY	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	2 cut(s)	183, 249
SapI	GCTCTTC	2 cut(s)	269, 621
SaqAI	TTAA	1 cut(s)	641
SatI	GCNGC	9 cut(s)	34, 48, 68, 392, 419, 464, 467, 470, 519
Sau3AI	GATC	3 cut(s)	261, 339, 489
Sau96I	GGNCC	2 cut(s)	65, 689
SbfI	CCTGCAGG	1 cut(s)	243
SchI	GAGTC	1 cut(s)	373
SdaI	CCTGCAGG	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	183, 249
SfaNI	GCATC	4 cut(s)	283, 450, 543, 667
SfcI	CTRYAG	3 cut(s)	239, 356, 618
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse8387I	CCTGCAGG	1 cut(s)	243
Sse9I	AATT	1 cut(s)	642
SstI	GAGCTC	2 cut(s)	183, 249
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	5 cut(s)	177, 183, 258, 321, 548
TasI	AATT	1 cut(s)	642
TauI	GCSGC	7 cut(s)	36, 50, 70, 421, 469, 472, 521
TfiI	GAWTC	3 cut(s)	298, 352, 527
Tru1I	TTAA	1 cut(s)	641
Tru9I	TTAA	1 cut(s)	641
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	2 cut(s)	391, 463
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	689
XceI	RCATGY	2 cut(s)	596, 707
XmnI	GAANNNNTTC	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.