Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Forward (+)

812396 .. 814101

Gene Structure 1706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGATGCAGCTGCTCCGAATTCAGGATCCGAATTTAATCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGACATGATTCGTAGGAGTTTCCGAAACCCAATAGTGAAGTTTCTGATGGAGCAAATGGAGAAATCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCTGGAGGTTACACTAAAGGAAGAGGGATAACTGTCTGCAGTAACTATCTGACCATTCAAGATGAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAGTGCCGAGCCAAGAATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAGATTCGTGCAGGTCATCTAAGCGGTGATTGCCATTTCAAGAGAGAACTTTTGCGCGGTTTCATTAAATTAAGAGGGCATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCACTTCGTGGCAACCCGTATTGCTCGGAAGTAGCTGCTAAAGACGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACTAAGCCTTTTGATAGAGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

194

Amino Acids

21.8

Weight (kDa)

8.0

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	25 - 123	2.3e-31	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	365
AccII	CGCG	3 cut(s)	57, 420, 524
AciI	CCGC	3 cut(s)	57, 387, 420
AclWI	GGATC	2 cut(s)	24, 37
AcsI	RAATTY	3 cut(s)	22, 35, 325
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	26, 203
AgsI	TTSAA	3 cut(s)	260, 403, 475
AjnI	CCWGG	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	14, 203, 512, 578
AluI	AGCT	4 cut(s)	14, 203, 512, 578
Alw21I	GWGCWC	2 cut(s)	349, 580
AlwI	GGATC	2 cut(s)	24, 37
ApeKI	GCWGC	4 cut(s)	11, 14, 360, 512
ApoI	RAATTY	3 cut(s)	22, 35, 325
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	173, 401
AvaII	GGWCC	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	580
Bbv12I	GWGCWC	2 cut(s)	349, 580
BbvI	GCAGC	3 cut(s)	23, 372, 499
BccI	CCATC	2 cut(s)	121, 520
BcgI	CGANNNNNNTGC	4 cut(s)	49, 83, 353, 387
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	535
BfmI	CTRYAG	2 cut(s)	198, 238
BfuAI	ACCTGC	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	5 cut(s)	12, 15, 58, 361, 513
BlsI	GCNGC	5 cut(s)	13, 16, 59, 362, 514
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	225
Bsa29I	ATCGAT	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 203
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	26, 203
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	3 cut(s)	23, 372, 499
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	3 cut(s)	57, 420, 524
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	349, 580
BslI	CCNNNNNNNGG	2 cut(s)	26, 203
BsmI	GAATGC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	349, 580
Bsp143I	GATC	1 cut(s)	29
BspACI	CCGC	3 cut(s)	57, 387, 420
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	3 cut(s)	57, 420, 524
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	2 cut(s)	24, 37
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	217, 460
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	2 cut(s)	383, 561
BstFNI	CGCG	3 cut(s)	57, 420, 524
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	4 cut(s)	353, 393, 521, 530
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	2 cut(s)	198, 238
BstUI	CGCG	3 cut(s)	57, 420, 524
BstV1I	GCAGC	3 cut(s)	23, 372, 499
BstX2I	RGATCY	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	535
BsuTUI	ATCGAT	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	539
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	2 cut(s)	63, 530
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	5 cut(s)	85, 287, 299, 353, 443
CviJI	RGCY	7 cut(s)	14, 179, 203, 320, 512, 565, 578
CviKI_1	RGCY	7 cut(s)	14, 179, 203, 320, 512, 565, 578
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	2 cut(s)	383, 561
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
DraIII	CACNNNGTG	1 cut(s)	485
Eam1104I	CTCTTC	2 cut(s)	217, 460
EarI	CTCTTC	2 cut(s)	217, 460
Ecl136II	GAGCTC	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	580
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	578
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	580
FaeI	CATG	5 cut(s)	88, 290, 302, 356, 446
FaiI	YATR	8 cut(s)	86, 284, 288, 300, 306, 354, 444, 458
FatI	CATG	5 cut(s)	84, 286, 298, 352, 442
Fnu4HI	GCNGC	5 cut(s)	12, 15, 58, 361, 513
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	5 cut(s)	12, 15, 58, 361, 513
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	5 cut(s)	12, 15, 58, 361, 513
GsuI	CTGGAG	1 cut(s)	225
HgaI	GACGC	2 cut(s)	63, 530
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	5 cut(s)	88, 290, 302, 356, 446
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	88, 295, 367
HphI	GGTGA	2 cut(s)	173, 401
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	6 cut(s)	21, 34, 104, 126, 252, 505
Hpy188III	TCNNGA	3 cut(s)	27, 260, 403
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	11, 240, 360, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	353, 393, 521, 530
HpyF3I	CTNAG	2 cut(s)	383, 561
Hsp92II	CATG	5 cut(s)	88, 290, 302, 356, 446
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	29
LmnI	GCTCC	4 cut(s)	22, 47, 130, 583
LpnPI	CCDG	8 cut(s)	12, 30, 57, 132, 177, 189, 210, 360
Lsp1109I	GCAGC	3 cut(s)	23, 372, 499
MaeIII	GTNAC	3 cut(s)	209, 242, 548
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	3 cut(s)	17, 234, 477
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	349, 580
MluCI	AATT	6 cut(s)	22, 35, 166, 325, 340, 431
MnlI	CCTC	3 cut(s)	200, 218, 431
MseI	TTAA	4 cut(s)	39, 174, 429, 434
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	3 cut(s)	57, 420, 524
MwoI	GCNNNNNNNGC	4 cut(s)	353, 393, 521, 530
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	5 cut(s)	88, 290, 302, 356, 446
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	341
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	88, 295, 367
PfoI	TCCNGGA	1 cut(s)	43
PkrI	GCNGC	5 cut(s)	13, 16, 59, 362, 514
Psp124BI	GAGCTC	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	303
SacI	GAGCTC	1 cut(s)	580
SaqAI	TTAA	4 cut(s)	39, 174, 429, 434
SatI	GCNGC	5 cut(s)	12, 15, 58, 361, 513
Sau3AI	GATC	1 cut(s)	29
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	349, 580
SetI	ASST	7 cut(s)	16, 199, 205, 211, 379, 514, 580
SfcI	CTRYAG	2 cut(s)	198, 238
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	6 cut(s)	22, 35, 166, 325, 340, 431
SsiI	CCGC	3 cut(s)	57, 387, 420
SstI	GAGCTC	1 cut(s)	580
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	69
TasI	AATT	6 cut(s)	22, 35, 166, 325, 340, 431
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	88, 295, 367
Tru1I	TTAA	4 cut(s)	39, 174, 429, 434
Tru9I	TTAA	4 cut(s)	39, 174, 429, 434
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	4 cut(s)	11, 14, 360, 512
TspDTI	ATGAA	5 cut(s)	87, 279, 287, 415, 459
TspRI	CASTG	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	3 cut(s)	22, 35, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.