Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Forward (+)

9375448 .. 9377876

Gene Structure 2429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1129500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGGCTGAACCCCCACAGGAACCCGGATCCACAAGCTTCTCCACCGCCGTCAACGGCGGCAAGAAGTTGGAGGAATGCCAAACCATGATCCAGAGGAGCCTCCGGACTCCGATGGTGAAATTTCTGTTGAAGCATTTGGAGCAGTCTGGGTGTGGGATTGGGGACAGGTTCATCAAGGCCATTAATTGCAATAAGCAGATTGCTGGCGGTTATATTCGCGGCGAAGGGATACTGGTGTGTAGTAATCACATGACAATGCAAGACGATGTCAACCAAGTAGTGATACACGAGCTAATCCACGCTTTTGACGATTGTCGTGCTAAAAACTTGGACTGGGCTAATTGTGCTCATCATGCTTGCAGTGAGATTCGTGCTGCCCATCTAAGTGGTGACTGCCACTATAAAAGGGAATTGTTGCGGGGTTTTGTAAAGATTCGAGGTCATGAACAAGATTGTGTGAGACGAAGAGTTATGAAATCAGTCATTTGTAATCCGCATTGCTCAGAAGCAGCCGCAAAGGATGCCATGGAAGCTGTTTGGGATGTTTGTTACAATGATACCCAGCCCTTTGACAGAGCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

196

Amino Acids

21.81

Weight (kDa)

7.11

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	25 - 192	2.5e-61	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	105
AciI	CCGC	8 cut(s)	5, 48, 60, 210, 222, 421, 497, 516
AclWI	GGATC	3 cut(s)	24, 37, 85
AcsI	RAATTY	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	4 cut(s)	39, 295, 536, 581
AluI	AGCT	4 cut(s)	39, 295, 536, 581
Alw21I	GWGCWC	2 cut(s)	352, 583
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	3 cut(s)	24, 37, 85
Aor13HI	TCCGGA	1 cut(s)	105
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	377, 512
ApoI	RAATTY	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	130, 404
BaeI	ACNNNNGTAYC	2 cut(s)	224, 257
BamHI	GGATCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	583
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	352, 583
BbvI	GCAGC	2 cut(s)	364, 524
BccI	CCATC	2 cut(s)	109, 390
BceAI	ACGGC	2 cut(s)	35, 73
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciVI	GTATCC	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
BlsI	GCNGC	6 cut(s)	7, 62, 224, 379, 514, 517
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	24, 31, 101
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	346
BoxI	GACNNNNGTC	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	240, 341
Bse3DI	GCAATG	1 cut(s)	499
BseAI	TCCGGA	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	529, 550
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	240, 341
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	364, 524
BseYI	CCCAGC	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	2 cut(s)	352, 583
BsiSI	CCGG	2 cut(s)	27, 106
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	457
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	352, 583
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	29, 90
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	8 cut(s)	5, 48, 60, 210, 222, 421, 497, 516
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	518
BspEI	TCCGGA	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	24, 31, 101
BspPI	GGATC	3 cut(s)	24, 37, 85
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	240, 341
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	2 cut(s)	29, 90
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	208, 361
BstDEI	CTNAG	2 cut(s)	386, 505
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	529, 550
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	32, 93
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	2 cut(s)	29, 90
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 347, 356, 524, 533
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	364, 524
BstX2I	RGATCY	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	529, 550
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	208, 361
CciI	TCATGA	1 cut(s)	445
CviAII	CATG	5 cut(s)	88, 253, 356, 446, 529
DdeI	CTNAG	2 cut(s)	386, 505
DpnI	GATC	2 cut(s)	31, 92
DpnII	GATC	2 cut(s)	29, 90
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	5 cut(s)	91, 256, 359, 449, 532
FaiI	YATR	8 cut(s)	89, 216, 254, 357, 405, 447, 476, 530
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	5 cut(s)	87, 252, 355, 445, 528
FauI	CCCGC	1 cut(s)	414
Fnu4HI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
FokI	GGATG	2 cut(s)	536, 557
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
GluI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
GsaI	CCCAGC	1 cut(s)	568
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	27, 106
Hin1II	CATG	5 cut(s)	91, 256, 359, 449, 532
HincII	GTYRAC	2 cut(s)	55, 274
HindII	GTYRAC	2 cut(s)	55, 274
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	3 cut(s)	109, 370, 436
HpaII	CCGG	2 cut(s)	27, 106
HphI	GGTGA	2 cut(s)	130, 404
Hpy166II	GTNNAC	2 cut(s)	55, 274
Hpy188I	TCNGA	2 cut(s)	114, 508
Hpy188III	TCNNGA	3 cut(s)	94, 106, 446
Hpy8I	GTNNAC	2 cut(s)	55, 274
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	192, 262, 363
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 347, 356, 524, 533
HpyF3I	CTNAG	2 cut(s)	386, 505
Hsp92II	CATG	5 cut(s)	91, 256, 359, 449, 532
Kpn2I	TCCGGA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	29, 90
LmnI	GCTCC	3 cut(s)	99, 142, 586
Lsp1109I	GCAGC	2 cut(s)	364, 524
LweI	GCATC	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	392, 551
MalI	GATC	2 cut(s)	31, 92
MboI	GATC	2 cut(s)	29, 90
MboII	GAAGA	1 cut(s)	480
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	352, 583
MluCI	AATT	4 cut(s)	122, 187, 343, 413
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	67, 90, 113, 434
MroI	TCCGGA	1 cut(s)	105
MseI	TTAA	2 cut(s)	186, 586
MslI	CAYNNNNRTG	2 cut(s)	257, 387
MspI	CCGG	2 cut(s)	27, 106
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	83
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	5 cut(s)	142, 347, 356, 524, 533
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	29, 90
NlaIII	CATG	5 cut(s)	91, 256, 359, 449, 532
NlaIV	GGNNCC	3 cut(s)	24, 31, 101
NmuCI	GTSAC	1 cut(s)	392
PagI	TCATGA	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	370, 436
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	6 cut(s)	7, 62, 224, 379, 514, 517
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PshAI	GACNNNNGTC	1 cut(s)	315
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	564
PspN4I	GGNNCC	3 cut(s)	24, 31, 101
PsuI	RGATCY	1 cut(s)	29
PsyI	GACNNNGTC	1 cut(s)	269
RseI	CAYNNNNRTG	2 cut(s)	257, 387
SacI	GAGCTC	1 cut(s)	583
SaqAI	TTAA	2 cut(s)	186, 586
SatI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
Sau3AI	GATC	2 cut(s)	29, 90
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	352, 583
SetI	ASST	6 cut(s)	41, 173, 297, 445, 538, 583
SfaNI	GCATC	1 cut(s)	514
SmiMI	CAYNNNNRTG	2 cut(s)	257, 387
Sse9I	AATT	4 cut(s)	122, 187, 343, 413
SsiI	CCGC	8 cut(s)	5, 48, 60, 210, 222, 421, 497, 516
SstI	GAGCTC	1 cut(s)	583
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	528
TaqI	TCGA	1 cut(s)	439
TasI	AATT	4 cut(s)	122, 187, 343, 413
TauI	GCSGC	4 cut(s)	8, 63, 225, 518
TfiI	GAWTC	2 cut(s)	370, 436
Tru1I	TTAA	2 cut(s)	186, 586
Tru9I	TTAA	2 cut(s)	186, 586
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	2 cut(s)	377, 512
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	163, 462, 491
TspRI	CASTG	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.