Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Reverse (-)

89728903 .. 89732132

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG676500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTACCCAACGGCCTACCCGAACCGGCCCTTTTACCCGAGAATGAGTTACTCGTGCGGCACTGCCTGAGCGCCCCTGAGAGAAACACACCAACGACGAAATTGAGGGAGGCAATGGCAGACGAACCCACCCCAGAACCCGGAACCAGCACCTCCTCCTCCTCCTCCGCCGTCAACGGCGGCAAGACCGTCAACGAATGCGAGGACATGATTCGGAGAAGCCTCCGAACTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATTGGGGACGGGTTCATCAAGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGGATACACCCGCGGCGGAGGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCAAACTTGAACTGGGCTAATTGCGCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTATAAACGTGAATTTTTGCGGGGTTTTATGAAGATTCGAGGCCATGAACAAGATTGCGTGAGACGAAGAGTTATGAAATCGGTCACTGCTAATCCCTACTGCTCAGAAGCAGCAGCAAAGGATGCCATGGAAGCTGTGTGGGATGTTTGTTACAATGATACGCAGCCCTTTGACAGAGCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

235

Amino Acids

26.0

Weight (kDa)

6.26

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	66 - 232	3.9e-61	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AciI	CCGC	7 cut(s)	58, 168, 180, 340, 342, 345, 541
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	454
AluBI	AGCT	2 cut(s)	415, 656
AluI	AGCT	2 cut(s)	415, 656
Alw26I	GTCTC	1 cut(s)	577
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	5 cut(s)	13, 27, 300, 499, 562
ApeKI	GCWGC	4 cut(s)	443, 632, 635, 685
ApoI	RAATTY	1 cut(s)	533
AspLEI	GCGC	2 cut(s)	74, 470
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	250, 524
AvaI	CYCGRG	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	703
BauI	CACGAG	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	430, 644, 647, 697
BccI	CCATC	2 cut(s)	229, 510
BceAI	ACGGC	4 cut(s)	28, 155, 193, 287
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciVI	GTATCC	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	577
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	7 cut(s)	59, 181, 343, 444, 633, 636, 686
BlsI	GCNGC	7 cut(s)	60, 182, 344, 445, 634, 637, 687
Bme1390I	CCNGG	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	2 cut(s)	265, 634
BmuI	ACTGGG	1 cut(s)	466
BpmI	CTGGAG	2 cut(s)	272, 281
Bpu10I	CCTNAGC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	340, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	2 cut(s)	120, 307
BseDI	CCNNGG	2 cut(s)	340, 648
BseGI	GGATG	2 cut(s)	649, 670
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	2 cut(s)	120, 307
BseMII	CTCAG	3 cut(s)	59, 69, 639
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	4 cut(s)	145, 148, 151, 154
BseXI	GCAGC	4 cut(s)	430, 644, 647, 697
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	5 cut(s)	15, 29, 302, 501, 564
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	26, 141, 327
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	577
BsmBI	CGTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	5 cut(s)	15, 29, 302, 501, 564
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	7 cut(s)	58, 168, 180, 340, 342, 345, 541
BspANI	GGCC	5 cut(s)	15, 29, 302, 501, 564
BspCNI	CTCAG	3 cut(s)	60, 70, 638
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	120, 307
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	340, 648
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	583
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	4 cut(s)	68, 78, 506, 625
BstDSI	CCRYGG	2 cut(s)	340, 648
BstF5I	GGATG	2 cut(s)	649, 670
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 470
BstMAI	GTCTC	1 cut(s)	577
BstMWI	GCNNNNNNNGC	4 cut(s)	467, 476, 644, 653
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	4 cut(s)	430, 644, 647, 697
BstXI	CCANNNNNNTGG	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	5 cut(s)	15, 29, 302, 501, 564
BtgI	CCRYGG	2 cut(s)	340, 648
BtsCI	GGATG	2 cut(s)	649, 670
BtsI	GCAGTG	2 cut(s)	61, 606
BtsIMutI	CAGTG	2 cut(s)	61, 606
Cac8I	GCNNGC	1 cut(s)	499
CfoI	GCGC	2 cut(s)	74, 470
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	28
Cfr42I	CCGCGG	1 cut(s)	343
CviAII	CATG	8 cut(s)	208, 373, 379, 410, 422, 476, 566, 649
DdeI	CTNAG	4 cut(s)	68, 78, 506, 625
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EciI	GGCGGA	2 cut(s)	157, 360
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	703
Eco88I	CYCGRG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	648
Esp3I	CGTCTC	1 cut(s)	577
FaeI	CATG	8 cut(s)	211, 376, 382, 413, 425, 479, 569, 652
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	8 cut(s)	207, 372, 378, 409, 421, 475, 565, 648
FauI	CCCGC	2 cut(s)	347, 534
Fnu4HI	GCNGC	7 cut(s)	59, 181, 343, 444, 633, 636, 686
FokI	GGATG	2 cut(s)	656, 677
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	7 cut(s)	59, 181, 343, 444, 633, 636, 686
GlaI	GCGC	2 cut(s)	73, 469
GluI	GCNGC	7 cut(s)	59, 181, 343, 444, 633, 636, 686
GsuI	CTGGAG	2 cut(s)	272, 281
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	5 cut(s)	15, 29, 302, 501, 564
HapII	CCGG	3 cut(s)	26, 141, 327
HhaI	GCGC	2 cut(s)	74, 470
Hin1II	CATG	8 cut(s)	211, 376, 382, 413, 425, 479, 569, 652
Hin6I	GCGC	2 cut(s)	72, 468
HinP1I	GCGC	2 cut(s)	72, 468
HincII	GTYRAC	3 cut(s)	175, 193, 394
HindII	GTYRAC	3 cut(s)	175, 193, 394
HinfI	GANTC	3 cut(s)	211, 490, 556
HpaII	CCGG	3 cut(s)	26, 141, 327
HphI	GGTGA	2 cut(s)	250, 524
Hpy166II	GTNNAC	3 cut(s)	175, 193, 394
Hpy188I	TCNGA	4 cut(s)	216, 227, 234, 628
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	3 cut(s)	175, 193, 394
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	2 cut(s)	382, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	467, 476, 644, 653
HpyF3I	CTNAG	4 cut(s)	68, 78, 506, 625
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	8 cut(s)	211, 376, 382, 413, 425, 479, 569, 652
HspAI	GCGC	2 cut(s)	72, 468
KspI	CCGCGG	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	4 cut(s)	430, 644, 647, 697
LweI	GCATC	2 cut(s)	265, 634
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	4 cut(s)	3, 48, 604, 671
MboII	GAAGA	4 cut(s)	328, 331, 565, 600
MhlI	GDGCHC	1 cut(s)	703
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	4 cut(s)	101, 417, 463, 533
MluNI	TGGCCA	1 cut(s)	501
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MslI	CAYNNNNRTG	2 cut(s)	377, 507
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	3 cut(s)	26, 141, 327
MspR9I	CCNGG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	467, 476, 644, 653
NciI	CCSGG	1 cut(s)	141
NcoI	CCATGG	1 cut(s)	648
NlaIII	CATG	8 cut(s)	211, 376, 382, 413, 425, 479, 569, 652
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	604
NspI	RCATGY	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	211, 490, 556
PkrI	GCNGC	7 cut(s)	60, 182, 344, 445, 634, 637, 687
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	28
RseI	CAYNNNNRTG	2 cut(s)	377, 507
SacII	CCGCGG	1 cut(s)	343
SatI	GCNGC	7 cut(s)	59, 181, 343, 444, 633, 636, 686
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	703
SetI	ASST	5 cut(s)	155, 393, 417, 532, 658
SfaNI	GCATC	2 cut(s)	265, 634
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SmiMI	CAYNNNNRTG	2 cut(s)	377, 507
Sse9I	AATT	4 cut(s)	101, 417, 463, 533
SsiI	CCGC	7 cut(s)	58, 168, 180, 340, 342, 345, 541
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	1 cut(s)	559
TaqII	GACCGA	1 cut(s)	592
TasI	AATT	4 cut(s)	101, 417, 463, 533
TauI	GCSGC	3 cut(s)	61, 183, 345
TfiI	GAWTC	3 cut(s)	211, 490, 556
TscAI	CASTG	2 cut(s)	68, 613
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	4 cut(s)	443, 632, 635, 685
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	7 cut(s)	283, 296, 389, 410, 566, 582, 611
TspRI	CASTG	2 cut(s)	68, 613
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.