Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Reverse (-)

80007828 .. 80011057

Gene Structure 3230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG626100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTACCCAACGGCCTACCCGAACCGGCCCTTTTACCCGAGAATGAGTTACTCGTGCGGCACTGCCTGAGCGCCCCTGAGAGAAACACACCAACGACGAAATTGAGGGAGGCAATGGCAGACGAACCCACCCCAGAACCCGGAACCAGCACCTCCTCCTCCTCCTCCGCCGTCAACGGCGGCAAGACCGTCAACGAATGCGAGGACATGATTCGGAGAAGCCTCCGAACTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATTGGGGACGGGTTCATCAAGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGGATACACCCGCGGCGGAGGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCAAACTTGAACTGGGCTAATTGCGCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTATAAACGTGAATTTTTGCGGGGTTTTATGAAGATTCGAGGCCATGAACAAGTGAGTTTCTCAGCTTCAATTGAAATAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

202

Amino Acids

22.24

Weight (kDa)

6.41

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	66 - 191	3.9e-41	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AciI	CCGC	7 cut(s)	58, 168, 180, 340, 342, 345, 541
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	454, 591, 596
AluBI	AGCT	2 cut(s)	415, 587
AluI	AGCT	2 cut(s)	415, 587
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	5 cut(s)	13, 27, 300, 499, 562
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	533
AspLEI	GCGC	2 cut(s)	74, 470
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	250, 524
AvaI	CYCGRG	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	501
BauI	CACGAG	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	229, 510
BceAI	ACGGC	4 cut(s)	28, 155, 193, 287
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciVI	GTATCC	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	4 cut(s)	59, 181, 343, 444
BlsI	GCNGC	4 cut(s)	60, 182, 344, 445
Bme1390I	CCNGG	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	466
BpmI	CTGGAG	2 cut(s)	272, 281
Bpu10I	CCTNAGC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	2 cut(s)	120, 307
BseDI	CCNNGG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	2 cut(s)	120, 307
BseMII	CTCAG	3 cut(s)	59, 69, 597
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	4 cut(s)	145, 148, 151, 154
BseXI	GCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	5 cut(s)	15, 29, 302, 501, 564
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	26, 141, 327
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	5 cut(s)	15, 29, 302, 501, 564
BsoBI	CYCGRG	1 cut(s)	38
BspACI	CCGC	7 cut(s)	58, 168, 180, 340, 342, 345, 541
BspANI	GGCC	5 cut(s)	15, 29, 302, 501, 564
BspCNI	CTCAG	3 cut(s)	60, 70, 596
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	120, 307
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	340
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	4 cut(s)	68, 78, 506, 583
BstDSI	CCRYGG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 470
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 476
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	5 cut(s)	15, 29, 302, 501, 564
BtgI	CCRYGG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	499
CfoI	GCGC	2 cut(s)	74, 470
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	28
Cfr42I	CCGCGG	1 cut(s)	343
CviAII	CATG	7 cut(s)	208, 373, 379, 410, 422, 476, 566
DdeI	CTNAG	4 cut(s)	68, 78, 506, 583
EaeI	YGGCCR	1 cut(s)	499
EciI	GGCGGA	2 cut(s)	157, 360
Eco88I	CYCGRG	1 cut(s)	38
FaeI	CATG	7 cut(s)	211, 376, 382, 413, 425, 479, 569
FaiI	YATR	9 cut(s)	209, 374, 380, 411, 423, 477, 525, 551, 567
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	7 cut(s)	207, 372, 378, 409, 421, 475, 565
FauI	CCCGC	2 cut(s)	347, 534
Fnu4HI	GCNGC	4 cut(s)	59, 181, 343, 444
Fsp4HI	GCNGC	4 cut(s)	59, 181, 343, 444
GlaI	GCGC	2 cut(s)	73, 469
GluI	GCNGC	4 cut(s)	59, 181, 343, 444
GsuI	CTGGAG	2 cut(s)	272, 281
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	5 cut(s)	15, 29, 302, 501, 564
HapII	CCGG	3 cut(s)	26, 141, 327
HhaI	GCGC	2 cut(s)	74, 470
Hin1II	CATG	7 cut(s)	211, 376, 382, 413, 425, 479, 569
Hin6I	GCGC	2 cut(s)	72, 468
HinP1I	GCGC	2 cut(s)	72, 468
HincII	GTYRAC	3 cut(s)	175, 193, 394
HindII	GTYRAC	3 cut(s)	175, 193, 394
HinfI	GANTC	3 cut(s)	211, 490, 556
HpaII	CCGG	3 cut(s)	26, 141, 327
HphI	GGTGA	2 cut(s)	250, 524
Hpy166II	GTNNAC	3 cut(s)	175, 193, 394
Hpy188I	TCNGA	3 cut(s)	216, 227, 234
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	3 cut(s)	175, 193, 394
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	2 cut(s)	382, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 476
HpyF3I	CTNAG	4 cut(s)	68, 78, 506, 583
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	7 cut(s)	211, 376, 382, 413, 425, 479, 569
HspAI	GCGC	2 cut(s)	72, 468
KspI	CCGCGG	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	3, 48
MboII	GAAGA	3 cut(s)	328, 331, 565
MfeI	CAATTG	1 cut(s)	591
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	6 cut(s)	101, 417, 463, 533, 591, 604
MluNI	TGGCCA	1 cut(s)	501
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MslI	CAYNNNNRTG	2 cut(s)	377, 507
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	3 cut(s)	26, 141, 327
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	591
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	467, 476
NciI	CCSGG	1 cut(s)	141
NlaIII	CATG	7 cut(s)	211, 376, 382, 413, 425, 479, 569
NlaIV	GGNNCC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	211, 490, 556
PkrI	GCNGC	4 cut(s)	60, 182, 344, 445
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	28
RseI	CAYNNNNRTG	2 cut(s)	377, 507
SacII	CCGCGG	1 cut(s)	343
SatI	GCNGC	4 cut(s)	59, 181, 343, 444
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	5 cut(s)	155, 393, 417, 532, 589
SfaNI	GCATC	1 cut(s)	265
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SmiMI	CAYNNNNRTG	2 cut(s)	377, 507
Sse9I	AATT	6 cut(s)	101, 417, 463, 533, 591, 604
SsiI	CCGC	7 cut(s)	58, 168, 180, 340, 342, 345, 541
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	1 cut(s)	559
TasI	AATT	6 cut(s)	101, 417, 463, 533, 591, 604
TauI	GCSGC	3 cut(s)	61, 183, 345
TfiI	GAWTC	3 cut(s)	211, 490, 556
TscAI	CASTG	1 cut(s)	68
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	6 cut(s)	283, 296, 389, 410, 566, 582
TspRI	CASTG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.