Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Reverse (-)

81722355 .. 81724183

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTACCCATCGGCCTACCCGAACCGGCCCTTTTACCCGAGAACGAGTTACTCGTGGAGGCACCGCCTGAGAGAAACACACCAACGAGGAAATTGAGCGAGGCAATGGCAGACGAACCCACCCCAGAACCCGGAACTAGCACCTCCTCCTCCCCCGCCGTCAACGGCGGCAAGACCGTCAACGAATGCCAGGACATGATTCGGAGAAGCCTCCGAACTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATTGGGGACGGGTTCATCAAGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGGATACACCCGCGGCGGAGGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCAAACTTGAACTGGGCTAATTGCGCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTATAAACGCGAATTTTTGCGGGGTTTTATGAAGATTCGAGGCCATGAACAAGATTGCGTGAGACGAAGAGTTATGAAATCGGTCACTGCTAATCCCTACTGCTCAGAAGCAGCAGCAAAGGATGCCATGGAAGCTGTGTGGGATGTTTGTTACAATGATACGCAGCCCTTTGATAGAGCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

232

Amino Acids

25.53

Weight (kDa)

6.06

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	62 - 228	6.3e-61	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AccII	CGCG	2 cut(s)	330, 519
AciI	CCGC	7 cut(s)	65, 156, 168, 328, 330, 333, 529
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	403, 644
AluI	AGCT	2 cut(s)	403, 644
Alw26I	GTCTC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	5 cut(s)	13, 27, 288, 487, 550
ApeKI	GCWGC	4 cut(s)	431, 620, 623, 673
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	238, 512
AvaI	CYCGRG	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	691
BauI	CACGAG	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	418, 632, 635, 685
BccI	CCATC	3 cut(s)	17, 217, 498
BceAI	ACGGC	3 cut(s)	143, 181, 275
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	6 cut(s)	169, 331, 432, 621, 624, 674
BlsI	GCNGC	6 cut(s)	170, 332, 433, 622, 625, 675
Bme1390I	CCNGG	2 cut(s)	132, 191
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	2 cut(s)	132, 191
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	2 cut(s)	253, 622
BmuI	ACTGGG	1 cut(s)	454
BpmI	CTGGAG	2 cut(s)	260, 269
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	328, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	2 cut(s)	111, 295
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	328, 636
BseGI	GGATG	2 cut(s)	637, 658
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	2 cut(s)	111, 295
BseMII	CTCAG	2 cut(s)	60, 627
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	2 cut(s)	136, 139
BseXI	GCAGC	4 cut(s)	418, 632, 635, 685
Bsh1236I	CGCG	2 cut(s)	330, 519
BshFI	GGCC	5 cut(s)	15, 29, 290, 489, 552
BshNI	GGYRCC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	26, 132, 315
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	565
BsmBI	CGTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	5 cut(s)	15, 29, 290, 489, 552
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	7 cut(s)	65, 156, 168, 328, 330, 333, 529
BspANI	GGCC	5 cut(s)	15, 29, 290, 489, 552
BspCNI	CTCAG	2 cut(s)	61, 626
BspFNI	CGCG	2 cut(s)	330, 519
BspLI	GGNNCC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	111, 295
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	328, 636
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	636
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	3 cut(s)	69, 494, 613
BstDSI	CCRYGG	2 cut(s)	328, 636
BstF5I	GGATG	2 cut(s)	637, 658
BstFNI	CGCG	2 cut(s)	330, 519
BstHHI	GCGC	1 cut(s)	458
BstMAI	GTCTC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 464, 632, 641
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	130, 189
BstUI	CGCG	2 cut(s)	330, 519
BstV1I	GCAGC	4 cut(s)	418, 632, 635, 685
BstXI	CCANNNNNNTGG	1 cut(s)	497
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	5 cut(s)	15, 29, 290, 489, 552
BtgI	CCRYGG	2 cut(s)	328, 636
BtsCI	GGATG	2 cut(s)	637, 658
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	1 cut(s)	487
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	28
Cfr42I	CCGCGG	1 cut(s)	331
CviAII	CATG	8 cut(s)	196, 361, 367, 398, 410, 464, 554, 637
DdeI	CTNAG	3 cut(s)	69, 494, 613
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
EciI	GGCGGA	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	636
Eco24I	GRGCYC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	636
Esp3I	CGTCTC	1 cut(s)	565
FaeI	CATG	8 cut(s)	199, 364, 370, 401, 413, 467, 557, 640
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	8 cut(s)	195, 360, 366, 397, 409, 463, 553, 636
FauI	CCCGC	3 cut(s)	163, 335, 522
Fnu4HI	GCNGC	6 cut(s)	169, 331, 432, 621, 624, 674
FokI	GGATG	2 cut(s)	644, 665
FriOI	GRGCYC	1 cut(s)	691
Fsp4HI	GCNGC	6 cut(s)	169, 331, 432, 621, 624, 674
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	6 cut(s)	169, 331, 432, 621, 624, 674
GsuI	CTGGAG	2 cut(s)	260, 269
HaeIII	GGCC	5 cut(s)	15, 29, 290, 489, 552
HapII	CCGG	3 cut(s)	26, 132, 315
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	8 cut(s)	199, 364, 370, 401, 413, 467, 557, 640
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HincII	GTYRAC	3 cut(s)	163, 181, 382
HindII	GTYRAC	3 cut(s)	163, 181, 382
HinfI	GANTC	3 cut(s)	199, 478, 544
HpaII	CCGG	3 cut(s)	26, 132, 315
HphI	GGTGA	2 cut(s)	238, 512
Hpy166II	GTNNAC	3 cut(s)	163, 181, 382
Hpy188I	TCNGA	4 cut(s)	204, 215, 222, 616
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	3 cut(s)	163, 181, 382
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	370, 434
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 464, 632, 641
HpyF3I	CTNAG	3 cut(s)	69, 494, 613
Hsp92II	CATG	8 cut(s)	199, 364, 370, 401, 413, 467, 557, 640
HspAI	GCGC	1 cut(s)	456
KspI	CCGCGG	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	4 cut(s)	418, 632, 635, 685
LweI	GCATC	2 cut(s)	253, 622
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	4 cut(s)	3, 48, 592, 659
MboII	GAAGA	4 cut(s)	316, 319, 553, 588
MhlI	GDGCHC	1 cut(s)	691
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	92, 405, 451, 521
MluNI	TGGCCA	1 cut(s)	489
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MslI	CAYNNNNRTG	2 cut(s)	365, 495
Msp20I	TGGCCA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	3 cut(s)	26, 132, 315
MspR9I	CCNGG	2 cut(s)	132, 191
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	330, 519
MwoI	GCNNNNNNNGC	4 cut(s)	455, 464, 632, 641
NciI	CCSGG	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	636
NlaIII	CATG	8 cut(s)	199, 364, 370, 401, 413, 467, 557, 640
NlaIV	GGNNCC	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 51
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	199, 478, 544
PkrI	GCNGC	6 cut(s)	170, 332, 433, 622, 625, 675
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	28
RseI	CAYNNNNRTG	2 cut(s)	365, 495
SacII	CCGCGG	1 cut(s)	331
SatI	GCNGC	6 cut(s)	169, 331, 432, 621, 624, 674
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	132, 191
SduI	GDGCHC	1 cut(s)	691
SetI	ASST	4 cut(s)	146, 381, 405, 646
SfaNI	GCATC	2 cut(s)	253, 622
Sfr303I	CCGCGG	1 cut(s)	331
SgrBI	CCGCGG	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	365, 495
Sse9I	AATT	4 cut(s)	92, 405, 451, 521
SsiI	CCGC	7 cut(s)	65, 156, 168, 328, 330, 333, 529
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	130, 189
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	547
TaqII	GACCGA	1 cut(s)	580
TasI	AATT	4 cut(s)	92, 405, 451, 521
TauI	GCSGC	2 cut(s)	171, 333
TfiI	GAWTC	3 cut(s)	199, 478, 544
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	431, 620, 623, 673
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	7 cut(s)	271, 284, 377, 398, 554, 570, 599
TspRI	CASTG	1 cut(s)	601
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.