Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Forward (+)

7907483 .. 7909132

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g11670.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGGCCGAATCCGGACCGGAACCCGGATCCACAAGCTTCTCCTCCGCCGTCAACGGCGGCAAGAAGTTGGAGGAATGCCAAACCATGATCCAAAGGAGCCTCCGGACTCCGATGGTGAAATTTCTGTTGAAGCATTTGGAGCAGTCTGGGTGTGGGATTGGGGACAGGTTCATCAAGGCCATTAATTGCAATAAGCAGATTGCTGGCGGTTATATTCGCGGCGAAGGGATACTGGTGTGTAGTAACCACATGACAATGCAAGACGATGTCAACCAAGTAGTGATACACGAGTTAATTCACGCTTTTGACGATTGTCGTGCTAAAAACTTGGACTGGGCTAATTGTGCTCATCATGCTTGCAGTGAGATTCGTGCTGCCCATCTAAGTGGTGACTGCCACTATAAAAGGGAATTGTTGCGGGGTTTTGTAAAGATTCGAGGTCATGAACAAGATTGTGTGAGACGAAGAGTTATGAAATCAGTCATTTGTAATCCGCATTGCTCAGAAGCAGCTGCAAAGGACGCCATGGAAGCTGTTTGGGATGTTTGTTACACTGATACCCAGCCCTTTGACAGAGCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

196

Amino Acids

21.7

Weight (kDa)

7.11

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AccIII	TCCGGA	2 cut(s)	14, 105
AciI	CCGC	7 cut(s)	5, 48, 60, 210, 222, 421, 497
AclWI	GGATC	3 cut(s)	24, 37, 85
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	525
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	4 cut(s)	39, 515, 536, 581
AluI	AGCT	4 cut(s)	39, 515, 536, 581
Alw21I	GWGCWC	2 cut(s)	352, 583
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	3 cut(s)	24, 37, 85
Aor13HI	TCCGGA	2 cut(s)	14, 105
AoxI	GGCC	2 cut(s)	6, 180
ApeKI	GCWGC	3 cut(s)	377, 512, 515
ApoI	RAATTY	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	130, 404
AvaII	GGWCC	1 cut(s)	17
BaeI	ACNNNNGTAYC	4 cut(s)	224, 257, 278, 311
BamHI	GGATCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	583
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	352, 583
BbvI	GCAGC	3 cut(s)	364, 502, 524
BccI	CCATC	2 cut(s)	109, 390
BceAI	ACGGC	2 cut(s)	35, 73
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciVI	GTATCC	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
BlsI	GCNGC	6 cut(s)	7, 62, 224, 379, 514, 517
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	3 cut(s)	24, 31, 101
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	346
BoxI	GACNNNNGTC	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	3 cut(s)	14, 19, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	240, 341
Bse3DI	GCAATG	1 cut(s)	499
BseAI	TCCGGA	2 cut(s)	14, 105
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	240, 341
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	364, 502, 524
BseYI	CCCAGC	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	8, 182
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	352, 583
BsiSI	CCGG	4 cut(s)	15, 20, 27, 106
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	457
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	8, 182
Bsp1286I	GDGCHC	2 cut(s)	352, 583
Bsp13I	TCCGGA	2 cut(s)	14, 105
Bsp143I	GATC	2 cut(s)	29, 90
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	7 cut(s)	5, 48, 60, 210, 222, 421, 497
BspANI	GGCC	2 cut(s)	8, 182
BspCNI	CTCAG	1 cut(s)	518
BspEI	TCCGGA	2 cut(s)	14, 105
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	24, 31, 101
BspPI	GGATC	3 cut(s)	24, 37, 85
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	240, 341
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	2 cut(s)	29, 90
BssNI	GRCGYC	1 cut(s)	525
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	463
BstACI	GRCGYC	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	208, 361
BstDEI	CTNAG	2 cut(s)	386, 505
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	32, 93
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	2 cut(s)	29, 90
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 347, 356, 524, 533
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	364, 502, 524
BstX2I	RGATCY	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	29
BstZI	CGGCCG	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	8, 182
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	370, 555
Cac8I	GCNNGC	2 cut(s)	208, 361
CciI	TCATGA	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	17
CpoI	CGGWCCG	1 cut(s)	17
CseI	GACGC	1 cut(s)	533
CspI	CGGWCCG	1 cut(s)	17
CviAII	CATG	5 cut(s)	88, 253, 356, 446, 529
CviJI	RGCY	9 cut(s)	8, 39, 102, 182, 341, 515, 536, 568, 581
CviKI_1	RGCY	9 cut(s)	8, 39, 102, 182, 341, 515, 536, 568, 581
DdeI	CTNAG	2 cut(s)	386, 505
DpnI	GATC	2 cut(s)	31, 92
DpnII	GATC	2 cut(s)	29, 90
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	581
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	17
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	5 cut(s)	91, 256, 359, 449, 532
FaiI	YATR	8 cut(s)	89, 216, 254, 357, 405, 447, 476, 530
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	5 cut(s)	87, 252, 355, 445, 528
FauI	CCCGC	1 cut(s)	414
Fnu4HI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
GluI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
GsaI	CCCAGC	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	8, 182
HapII	CCGG	4 cut(s)	15, 20, 27, 106
HgaI	GACGC	1 cut(s)	533
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	5 cut(s)	91, 256, 359, 449, 532
HincII	GTYRAC	2 cut(s)	55, 274
HindII	GTYRAC	2 cut(s)	55, 274
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	4 cut(s)	11, 109, 370, 436
HpaII	CCGG	4 cut(s)	15, 20, 27, 106
HphI	GGTGA	2 cut(s)	130, 404
Hpy166II	GTNNAC	2 cut(s)	55, 274
Hpy188I	TCNGA	2 cut(s)	114, 508
Hpy188III	TCNNGA	3 cut(s)	15, 106, 446
Hpy8I	GTNNAC	2 cut(s)	55, 274
HpyAV	CCTTC	1 cut(s)	221
HpyCH4V	TGCA	4 cut(s)	192, 262, 363, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 347, 356, 524, 533
HpyF3I	CTNAG	2 cut(s)	386, 505
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	5 cut(s)	91, 256, 359, 449, 532
Kpn2I	TCCGGA	2 cut(s)	14, 105
Kzo9I	GATC	2 cut(s)	29, 90
LmnI	GCTCC	3 cut(s)	99, 142, 586
Lsp1109I	GCAGC	3 cut(s)	364, 502, 524
MaeIII	GTNAC	3 cut(s)	245, 392, 551
MalI	GATC	2 cut(s)	31, 92
MboI	GATC	2 cut(s)	29, 90
MboII	GAAGA	1 cut(s)	480
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	352, 583
MluCI	AATT	5 cut(s)	122, 187, 297, 343, 413
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	55, 67, 113, 434
MroI	TCCGGA	2 cut(s)	14, 105
MseI	TTAA	3 cut(s)	186, 296, 586
MslI	CAYNNNNRTG	2 cut(s)	257, 387
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	4 cut(s)	15, 20, 27, 106
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	83
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	5 cut(s)	142, 347, 356, 524, 533
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	29, 90
NlaIII	CATG	5 cut(s)	91, 256, 359, 449, 532
NlaIV	GGNNCC	3 cut(s)	24, 31, 101
NmuCI	GTSAC	1 cut(s)	392
PagI	TCATGA	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	11, 370, 436
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	6 cut(s)	7, 62, 224, 379, 514, 517
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PshAI	GACNNNNGTC	1 cut(s)	315
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	583
PspFI	CCCAGC	1 cut(s)	564
PspN4I	GGNNCC	3 cut(s)	24, 31, 101
PspPI	GGNCC	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	29
PsyI	GACNNNGTC	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	515
RseI	CAYNNNNRTG	2 cut(s)	257, 387
Rsr2I	CGGWCCG	1 cut(s)	17
RsrII	CGGWCCG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	583
SaqAI	TTAA	3 cut(s)	186, 296, 586
SatI	GCNGC	6 cut(s)	6, 61, 223, 378, 513, 516
Sau3AI	GATC	2 cut(s)	29, 90
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	352, 583
SetI	ASST	6 cut(s)	41, 173, 445, 517, 538, 583
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	2 cut(s)	257, 387
Sse9I	AATT	5 cut(s)	122, 187, 297, 343, 413
SsiI	CCGC	7 cut(s)	5, 48, 60, 210, 222, 421, 497
SstI	GAGCTC	1 cut(s)	583
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	528
TaqI	TCGA	1 cut(s)	439
TasI	AATT	5 cut(s)	122, 187, 297, 343, 413
TauI	GCSGC	3 cut(s)	8, 63, 225
TfiI	GAWTC	3 cut(s)	11, 370, 436
Tru1I	TTAA	3 cut(s)	186, 296, 586
Tru9I	TTAA	3 cut(s)	186, 296, 586
TscAI	CASTG	2 cut(s)	370, 562
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	3 cut(s)	377, 512, 515
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	163, 462, 491
TspRI	CASTG	2 cut(s)	370, 562
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.