Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002538.1

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Forward (+)

42109 .. 43837

Gene Structure 1729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002538.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggcagacgaacccaccccagaacccggaaccagcacctcctcctccgccgtcaacggcggcaagaccgtcaacgaatgcgaggacatgattcggagaagcctccgaactccgatggtgaagtttctgctggagcatctggagaaatctgggtgcgggattggggacgggttcatcaaggccgttcattgcgagaagaagattgccggaggatacacccgcggcggagggataatggtgtgtagtaatcacatgaacatgcaagatgaggtcaaccaagtagtgatacatgagctaattcatgcttttgatgattgtcgggctgcaaacttgaactgggctaattgcgctcatcatgcttgtagcgagattcgtgctggccatcttagtggtgattgccactataaacgtgaatttttgcggggttttatgaagattcgaggccatgaacaagattgcgtgagacgaagagttatgaaatcggtcactgctaatccctactgctcagaagcagcagcaaaggatgccatggaagctgtgtgggatgtttgttacaatgatacgcagccctttgacagagccccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

195

Amino Acids

21.62

Weight (kDa)

6.35

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	7 cut(s)	48, 60, 156, 220, 222, 225, 421
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	334
AluBI	AGCT	2 cut(s)	295, 536
AluI	AGCT	2 cut(s)	295, 536
Alw26I	GTCTC	1 cut(s)	457
AoxI	GGCC	3 cut(s)	180, 379, 442
ApeKI	GCWGC	4 cut(s)	323, 512, 515, 565
ApoI	RAATTY	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	130, 404
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	583
BbvI	GCAGC	4 cut(s)	310, 524, 527, 577
BccI	CCATC	2 cut(s)	109, 390
BceAI	ACGGC	3 cut(s)	35, 73, 167
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciVI	GTATCC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	6 cut(s)	61, 223, 324, 513, 516, 566
BlsI	GCNGC	6 cut(s)	62, 224, 325, 514, 517, 567
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	2 cut(s)	145, 514
BmuI	ACTGGG	1 cut(s)	346
BpmI	CTGGAG	2 cut(s)	152, 161
BpuMI	CCSGG	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	220, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	220, 528
BseGI	GGATG	2 cut(s)	529, 550
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	4 cut(s)	310, 524, 527, 577
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	182, 381, 444
BsiSI	CCGG	2 cut(s)	27, 207
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	457
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	182, 381, 444
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	7 cut(s)	48, 60, 156, 220, 222, 225, 421
BspANI	GGCC	3 cut(s)	182, 381, 444
BspCNI	CTCAG	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	220, 528
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	386, 505
BstDSI	CCRYGG	2 cut(s)	220, 528
BstF5I	GGATG	2 cut(s)	529, 550
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 356, 524, 533
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	310, 524, 527, 577
BstXI	CCANNNNNNTGG	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	182, 381, 444
BtgI	CCRYGG	2 cut(s)	220, 528
BtsCI	GGATG	2 cut(s)	529, 550
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	379
CfoI	GCGC	1 cut(s)	350
Cfr42I	CCGCGG	1 cut(s)	223
CviAII	CATG	8 cut(s)	88, 253, 259, 290, 302, 356, 446, 529
DdeI	CTNAG	2 cut(s)	386, 505
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
EciI	GGCGGA	2 cut(s)	37, 240
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	8 cut(s)	87, 252, 258, 289, 301, 355, 445, 528
FauI	CCCGC	3 cut(s)	149, 227, 414
Fnu4HI	GCNGC	6 cut(s)	61, 223, 324, 513, 516, 566
FokI	GGATG	2 cut(s)	536, 557
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	6 cut(s)	61, 223, 324, 513, 516, 566
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	6 cut(s)	61, 223, 324, 513, 516, 566
GsuI	CTGGAG	2 cut(s)	152, 161
HaeIII	GGCC	3 cut(s)	182, 381, 444
HapII	CCGG	2 cut(s)	27, 207
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	3 cut(s)	55, 73, 274
HindII	GTYRAC	3 cut(s)	55, 73, 274
HinfI	GANTC	3 cut(s)	91, 370, 436
HpaII	CCGG	2 cut(s)	27, 207
HphI	GGTGA	2 cut(s)	130, 404
Hpy166II	GTNNAC	3 cut(s)	55, 73, 274
Hpy188I	TCNGA	4 cut(s)	96, 107, 114, 508
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	3 cut(s)	55, 73, 274
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	262, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 356, 524, 533
HpyF3I	CTNAG	2 cut(s)	386, 505
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
HspAI	GCGC	1 cut(s)	348
KspI	CCGCGG	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	9 cut(s)	33, 40, 46, 116, 125, 135, 220, 322, 363
Lsp1109I	GCAGC	4 cut(s)	310, 524, 527, 577
LweI	GCATC	2 cut(s)	145, 514
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	2 cut(s)	484, 551
MboII	GAAGA	4 cut(s)	208, 211, 445, 480
MhlI	GDGCHC	1 cut(s)	583
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	3 cut(s)	297, 343, 413
MluNI	TGGCCA	1 cut(s)	381
MnlI	CCTC	9 cut(s)	49, 52, 55, 76, 113, 203, 221, 262, 434
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	257, 387
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	2 cut(s)	27, 207
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	83
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	347, 356, 524, 533
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	528
NlaIII	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	262
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	91, 370, 436
PkrI	GCNGC	6 cut(s)	62, 224, 325, 514, 517, 567
PspN4I	GGNNCC	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	257, 387
SacII	CCGCGG	1 cut(s)	223
SatI	GCNGC	6 cut(s)	61, 223, 324, 513, 516, 566
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	5 cut(s)	41, 273, 297, 412, 538
SfaNI	GCATC	2 cut(s)	145, 514
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	257, 387
Sse9I	AATT	3 cut(s)	297, 343, 413
SsiI	CCGC	7 cut(s)	48, 60, 156, 220, 222, 225, 421
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	439
TaqII	GACCGA	1 cut(s)	472
TasI	AATT	3 cut(s)	297, 343, 413
TauI	GCSGC	2 cut(s)	63, 225
TfiI	GAWTC	3 cut(s)	91, 370, 436
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	323, 512, 515, 565
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	7 cut(s)	163, 176, 269, 290, 446, 462, 491
TspRI	CASTG	1 cut(s)	493
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.