Rorug02G0572200

Mitochondrial inner membrane protease

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
69812740 .. 69813471
732 bp
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UTR
Exon/CDS
Intron
Rorug02G0572200.1

Sequence Viewer

Length: 372 bp
ATGGAAAACGTGCAAGAAATAATGCCTCCTAAAACCCCAATTCAATCTGAGACTATGAGCTTCTCTGATTGCATAACACCACCTCCACTCCAACACAAAGATGAAAACTCTCAAAATTCCGGCAACGATATACACAAAACCATCACCCCCGATCGCCTTAAAGTTCCAAAGGCATTCAAGTTCCCAGAAAGGTATACAAGCCCAACTGATATGATAATGTCCCCTGTAACAAAAGGACTTCTGGCCAGAAACAGAAAGGGTACTTCCCTCTTGCCTCCTAGCAAAAATTTGCTCAAGCCTACTCAAGATTCTGGATTTGCAGCAGTAGAATGTGGGATTCCTTCAGATTTGAAGTATGATCGGAAGAATTGA

Protein Analysis

123

Amino Acids

13.73

Weight (kDa)

8.93

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 2 cut(s) 115, 286
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 262
AgsI TTSAA 3 cut(s) 44, 178, 352
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 2 cut(s) 115, 286
AsuHPI GGTGA 1 cut(s) 136
BalI TGGCCA 1 cut(s) 245
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 278, 288
BsaXI ACNNNNNCTCC 4 cut(s) 67, 72, 97, 102
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 245
Bsp143I GATC 2 cut(s) 151, 358
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 40
BssMI GATC 2 cut(s) 151, 358
BssNAI GTATAC 1 cut(s) 195
Bst1107I GTATAC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 2 cut(s) 154, 361
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 151, 358
BstMCI CGRYCG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 332
BstZ17I GTATAC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 261
CviJI RGCY 4 cut(s) 60, 201, 245, 298
CviKI_1 RGCY 4 cut(s) 60, 201, 245, 298
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 153, 360
DpnII GATC 2 cut(s) 151, 358
EaeI YGGCCR 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 327
FaiI YATR 6 cut(s) 56, 74, 131, 195, 212, 357
FaqI GGGAC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 120
HinfI GANTC 2 cut(s) 308, 337
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 4 cut(s) 49, 67, 346, 363
Hpy188III TCNNGA 2 cut(s) 305, 312
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 351
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 13, 72, 320
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 9
Kzo9I GATC 2 cut(s) 151, 358
LpnPI CCDG 6 cut(s) 133, 198, 227, 237, 259, 297
Lsp1109I GCAGC 1 cut(s) 332
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 153, 360
MboI GATC 2 cut(s) 151, 358
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 4 cut(s) 39, 115, 286, 367
MluNI TGGCCA 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 36, 93, 278, 285
Mox20I TGGCCA 1 cut(s) 245
MscI TGGCCA 1 cut(s) 245
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 245
MspI CCGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 173
NdeII GATC 2 cut(s) 151, 358
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 308, 337
PkrI GCNGC 1 cut(s) 322
Ple19I CGATCG 1 cut(s) 154
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 2 cut(s) 151, 358
SetI ASST 4 cut(s) 12, 62, 85, 194
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 293, 303
SmoI CTYRAG 2 cut(s) 293, 303
Sse9I AATT 4 cut(s) 39, 115, 286, 367
SspMI CTAG 1 cut(s) 279
TaiI ACGT 1 cut(s) 12
TasI AATT 4 cut(s) 39, 115, 286, 367
TfiI GAWTC 2 cut(s) 308, 337
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 117
XapI RAATTY 2 cut(s) 115, 286
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.