Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Forward (+)

8831848 .. 8834440

Gene Structure 2593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09970.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCAGATGAATCCACCTCAGAACCTGGAACCAGCAGCTCCTTCTCTTCCGCTGTCAGCGGCGGCACGACTGTCAAGGAATGCCAAGACATGATTCGAAGAAGCCTCCAAACTCCAATGGTGAAGTTTCTACTAGAGCATCTGGATAAATCTGGGTGTGCCGTTGGGGACGGGTTTATCAAGGCCGTTCATTGCGATAAGGAATTTGGCGGAGGCTATACCCGCGGCGAAGGGGTAATAGTGTGTAGTAATCACATGAACATGCAAGATGATGTCAACCAAGTAGTGATACATGAGCTAATTCATGTTTTTGATGATTGTCGGGCTGCAAACTTGAACTGGGCTAATTGTGCTCATCATGCTTGTAGTGAGATTCGTGCAGGCCATCTTAGTGGTGATTGCCACTATAAGCGGGAATTTTTGCGTGGTTTTATGAAGATTCGAGGCCATGAACAAGATTGCGTGAGACGAAGAGTTATGAAGTCGGTCATTAATAATCCCTACTGCTCAGAAGCAGCGGCAAAGGATGCCATGGAAGCAGTTTGGGATGTTTGTTACAATGATACACAGCCATTTGACAGAGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

197

Amino Acids

21.78

Weight (kDa)

5.9

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	26 - 193	2.2e-60	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	8 cut(s)	51, 60, 63, 210, 223, 225, 412, 518
AcsI	RAATTY	2 cut(s)	203, 416
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	39, 298, 584
AluI	AGCT	3 cut(s)	39, 298, 584
Alw21I	GWGCWC	2 cut(s)	355, 586
Alw26I	GTCTC	1 cut(s)	460
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	3 cut(s)	183, 382, 445
ApeKI	GCWGC	3 cut(s)	36, 326, 515
ApoI	RAATTY	2 cut(s)	203, 416
AseI	ATTAAT	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	133, 407
AsuII	TTCGAA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	2 cut(s)	355, 586
BbvI	GCAGC	3 cut(s)	48, 313, 527
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	2 cut(s)	146, 170
BciT130I	CCWGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	134
BisI	GCNGC	7 cut(s)	37, 61, 64, 226, 327, 516, 519
BlsI	GCNGC	7 cut(s)	38, 62, 65, 227, 328, 517, 520
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	148, 517
BmuI	ACTGGG	1 cut(s)	349
Bpu14I	TTCGAA	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	223, 531
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	223, 531
BseGI	GGATG	2 cut(s)	532, 553
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	33, 522
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	3 cut(s)	48, 313, 527
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	185, 384, 447
BsiHKAI	GWGCWC	2 cut(s)	355, 586
BslFI	GGGAC	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	460
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	185, 384, 447
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	355, 586
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	8 cut(s)	51, 60, 63, 210, 223, 225, 412, 518
BspANI	GGCC	3 cut(s)	185, 384, 447
BspCNI	CTCAG	2 cut(s)	32, 521
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	223, 531
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	52, 466
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	19, 389, 508
BstDSI	CCRYGG	2 cut(s)	223, 531
BstF5I	GGATG	2 cut(s)	532, 553
BstFNI	CGCG	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	5 cut(s)	222, 350, 359, 527, 536
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	48, 313, 527
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	185, 384, 447
BtgI	CCRYGG	2 cut(s)	223, 531
BtsCI	GGATG	2 cut(s)	532, 553
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr42I	CCGCGG	1 cut(s)	226
CviAII	CATG	8 cut(s)	91, 256, 262, 293, 305, 359, 449, 532
DdeI	CTNAG	3 cut(s)	19, 389, 508
Eam1104I	CTCTTC	2 cut(s)	52, 466
EarI	CTCTTC	2 cut(s)	52, 466
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	8 cut(s)	94, 259, 265, 296, 308, 362, 452, 535
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	8 cut(s)	90, 255, 261, 292, 304, 358, 448, 531
FauI	CCCGC	2 cut(s)	230, 405
Fnu4HI	GCNGC	7 cut(s)	37, 61, 64, 226, 327, 516, 519
FokI	GGATG	2 cut(s)	539, 560
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	7 cut(s)	37, 61, 64, 226, 327, 516, 519
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	7 cut(s)	37, 61, 64, 226, 327, 516, 519
HaeIII	GGCC	3 cut(s)	185, 384, 447
Hin1II	CATG	8 cut(s)	94, 259, 265, 296, 308, 362, 452, 535
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	4 cut(s)	11, 94, 373, 439
HphI	GGTGA	2 cut(s)	133, 407
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	3 cut(s)	7, 22, 511
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	52, 224
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	265, 329, 380
HpyF10VI	GCNNNNNNNGC	5 cut(s)	222, 350, 359, 527, 536
HpyF3I	CTNAG	3 cut(s)	19, 389, 508
Hsp92II	CATG	8 cut(s)	94, 259, 265, 296, 308, 362, 452, 535
KspI	CCGCGG	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	44, 589
LpnPI	CCDG	7 cut(s)	12, 39, 46, 128, 138, 325, 366
Lsp1109I	GCAGC	3 cut(s)	48, 313, 527
LweI	GCATC	2 cut(s)	148, 517
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	554
MboII	GAAGA	4 cut(s)	39, 111, 448, 483
MhlI	GDGCHC	2 cut(s)	355, 586
MluCI	AATT	4 cut(s)	203, 300, 346, 416
MnlI	CCTC	4 cut(s)	28, 116, 206, 437
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	2 cut(s)	260, 390
MspA1I	CMGCKG	4 cut(s)	53, 60, 225, 518
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	5 cut(s)	222, 350, 359, 527, 536
NcoI	CCATGG	1 cut(s)	531
NlaIII	CATG	8 cut(s)	94, 259, 265, 296, 308, 362, 452, 535
NlaIV	GGNNCC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	11, 94, 373, 439
PkrI	GCNGC	7 cut(s)	38, 62, 65, 227, 328, 517, 520
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	26
RseI	CAYNNNNRTG	2 cut(s)	260, 390
SacI	GAGCTC	1 cut(s)	586
SacII	CCGCGG	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	7 cut(s)	37, 61, 64, 226, 327, 516, 519
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	355, 586
SetI	ASST	5 cut(s)	20, 28, 41, 300, 586
SfaNI	GCATC	2 cut(s)	148, 517
Sfr303I	CCGCGG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	97
SgrBI	CCGCGG	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	260, 390
Sse9I	AATT	4 cut(s)	203, 300, 346, 416
SsiI	CCGC	8 cut(s)	51, 60, 63, 210, 223, 225, 412, 518
SspMI	CTAG	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	97, 442
TaqII	GACCGA	1 cut(s)	475
TasI	AATT	4 cut(s)	203, 300, 346, 416
TauI	GCSGC	4 cut(s)	63, 66, 228, 521
TfiI	GAWTC	4 cut(s)	11, 94, 373, 439
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseI	GCWGC	3 cut(s)	36, 326, 515
TspDTI	ATGAA	7 cut(s)	24, 179, 272, 293, 449, 465, 494
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	2 cut(s)	203, 416
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.