Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Reverse (-)

86565966 .. 86568993

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54086

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTACCCATCGGCCTACCCGAACCGGCCCTTTTACCCGAGAATGAGTTACTCGTGCGGCACTGCCTGAGCGCCCCTGAGAGAAACACACCAACGAGGAAATTGAGGGAGGCAATGGCAGACGAACCCACCCCAGAACCCGGAACCAGCACCTCCCCCTCCGCCGTCAACGGCGGCAAGACCGTCAACGAATGCCAGGACATGATTCGGAGAAGCCTCCGAACTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATTGGGGACGGGTTCATCAAGGCTGTTCATTGCGAGAAGAAGATTGCCGGAGGATACACCCGCGGCGGAGGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCAAACTTGAACTGGGCTAATTGCGCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTATAAACGTGAATTTTTGCGGGGTTTTATGAAGATTCGAGGCCATGAACAAGATTGCGTGAGACGAAGAGTTATGAAATCGGTCACTGCTAATCCCTACTGCTCAGAAGCAGCAGCAAAGGATGCCATGGAAGCTGTGTGGGATGTTTGTTACAATGATACGCAGCCCTTTGACAGAGCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

233

Amino Acids

25.89

Weight (kDa)

6.59

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	64 - 230	6.5e-61	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	336
AciI	CCGC	7 cut(s)	58, 162, 174, 334, 336, 339, 535
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	527
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	409, 650
AluI	AGCT	2 cut(s)	409, 650
Alw26I	GTCTC	1 cut(s)	571
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	4 cut(s)	13, 27, 493, 556
ApeKI	GCWGC	4 cut(s)	437, 626, 629, 679
ApoI	RAATTY	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	74, 464
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	244, 518
AvaI	CYCGRG	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	697
BauI	CACGAG	1 cut(s)	53
BbvI	GCAGC	4 cut(s)	424, 638, 641, 691
BccI	CCATC	3 cut(s)	17, 223, 504
BceAI	ACGGC	2 cut(s)	149, 187
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	571
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	7 cut(s)	59, 175, 337, 438, 627, 630, 680
BlsI	GCNGC	7 cut(s)	60, 176, 338, 439, 628, 631, 681
Bme1390I	CCNGG	2 cut(s)	141, 197
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	141, 197
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	2 cut(s)	259, 628
BmuI	ACTGGG	1 cut(s)	460
BpmI	CTGGAG	2 cut(s)	266, 275
Bpu10I	CCTNAGC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	334, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	2 cut(s)	120, 301
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	334, 642
BseGI	GGATG	2 cut(s)	643, 664
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	2 cut(s)	120, 301
BseMII	CTCAG	3 cut(s)	59, 69, 633
BseNI	ACTGG	1 cut(s)	455
BseXI	GCAGC	4 cut(s)	424, 638, 641, 691
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	4 cut(s)	15, 29, 495, 558
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	26, 141, 321
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	571
BsmBI	CGTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	15, 29, 495, 558
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	7 cut(s)	58, 162, 174, 334, 336, 339, 535
BspANI	GGCC	4 cut(s)	15, 29, 495, 558
BspCNI	CTCAG	3 cut(s)	60, 70, 632
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	120, 301
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	334, 642
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	577
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	4 cut(s)	68, 78, 500, 619
BstDSI	CCRYGG	2 cut(s)	334, 642
BstF5I	GGATG	2 cut(s)	643, 664
BstFNI	CGCG	1 cut(s)	336
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 464
BstMAI	GTCTC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	4 cut(s)	461, 470, 638, 647
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	139, 195
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	424, 638, 641, 691
BstXI	CCANNNNNNTGG	1 cut(s)	503
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	4 cut(s)	15, 29, 495, 558
BtgI	CCRYGG	2 cut(s)	334, 642
BtsCI	GGATG	2 cut(s)	643, 664
BtsI	GCAGTG	2 cut(s)	61, 600
BtsIMutI	CAGTG	2 cut(s)	61, 600
Cac8I	GCNNGC	1 cut(s)	493
CfoI	GCGC	2 cut(s)	74, 464
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	28
Cfr42I	CCGCGG	1 cut(s)	337
CviAII	CATG	8 cut(s)	202, 367, 373, 404, 416, 470, 560, 643
DdeI	CTNAG	4 cut(s)	68, 78, 500, 619
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	577
EciI	GGCGGA	2 cut(s)	151, 354
Eco130I	CCWWGG	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	697
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	642
Esp3I	CGTCTC	1 cut(s)	571
FaeI	CATG	8 cut(s)	205, 370, 376, 407, 419, 473, 563, 646
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	8 cut(s)	201, 366, 372, 403, 415, 469, 559, 642
FauI	CCCGC	2 cut(s)	341, 528
Fnu4HI	GCNGC	7 cut(s)	59, 175, 337, 438, 627, 630, 680
FokI	GGATG	2 cut(s)	650, 671
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	7 cut(s)	59, 175, 337, 438, 627, 630, 680
GlaI	GCGC	2 cut(s)	73, 463
GluI	GCNGC	7 cut(s)	59, 175, 337, 438, 627, 630, 680
GsuI	CTGGAG	2 cut(s)	266, 275
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	15, 29, 495, 558
HapII	CCGG	3 cut(s)	26, 141, 321
HhaI	GCGC	2 cut(s)	74, 464
Hin1II	CATG	8 cut(s)	205, 370, 376, 407, 419, 473, 563, 646
Hin6I	GCGC	2 cut(s)	72, 462
HinP1I	GCGC	2 cut(s)	72, 462
HincII	GTYRAC	3 cut(s)	169, 187, 388
HindII	GTYRAC	3 cut(s)	169, 187, 388
HinfI	GANTC	3 cut(s)	205, 484, 550
HpaII	CCGG	3 cut(s)	26, 141, 321
HphI	GGTGA	2 cut(s)	244, 518
Hpy166II	GTNNAC	3 cut(s)	169, 187, 388
Hpy188I	TCNGA	4 cut(s)	210, 221, 228, 622
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	3 cut(s)	169, 187, 388
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	2 cut(s)	376, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	461, 470, 638, 647
HpyF3I	CTNAG	4 cut(s)	68, 78, 500, 619
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	8 cut(s)	205, 370, 376, 407, 419, 473, 563, 646
HspAI	GCGC	2 cut(s)	72, 462
KspI	CCGCGG	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	4 cut(s)	424, 638, 641, 691
LweI	GCATC	2 cut(s)	259, 628
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	4 cut(s)	3, 48, 598, 665
MboII	GAAGA	4 cut(s)	322, 325, 559, 594
MhlI	GDGCHC	1 cut(s)	697
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	4 cut(s)	101, 411, 457, 527
MluNI	TGGCCA	1 cut(s)	495
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MslI	CAYNNNNRTG	2 cut(s)	371, 501
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	3 cut(s)	26, 141, 321
MspR9I	CCNGG	2 cut(s)	141, 197
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	461, 470, 638, 647
NciI	CCSGG	1 cut(s)	141
NcoI	CCATGG	1 cut(s)	642
NlaIII	CATG	8 cut(s)	205, 370, 376, 407, 419, 473, 563, 646
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	598
NspI	RCATGY	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	205, 484, 550
PkrI	GCNGC	7 cut(s)	60, 176, 338, 439, 628, 631, 681
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	28
RseI	CAYNNNNRTG	2 cut(s)	371, 501
SacII	CCGCGG	1 cut(s)	337
SatI	GCNGC	7 cut(s)	59, 175, 337, 438, 627, 630, 680
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	141, 197
SduI	GDGCHC	1 cut(s)	697
SetI	ASST	5 cut(s)	155, 387, 411, 526, 652
SfaNI	GCATC	2 cut(s)	259, 628
Sfr303I	CCGCGG	1 cut(s)	337
SgrBI	CCGCGG	1 cut(s)	337
SmiMI	CAYNNNNRTG	2 cut(s)	371, 501
Sse9I	AATT	4 cut(s)	101, 411, 457, 527
SsiI	CCGC	7 cut(s)	58, 162, 174, 334, 336, 339, 535
StyD4I	CCNGG	2 cut(s)	139, 195
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	1 cut(s)	553
TaqII	GACCGA	1 cut(s)	586
TasI	AATT	4 cut(s)	101, 411, 457, 527
TauI	GCSGC	3 cut(s)	61, 177, 339
TfiI	GAWTC	3 cut(s)	205, 484, 550
TscAI	CASTG	2 cut(s)	68, 607
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	4 cut(s)	437, 626, 629, 679
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	7 cut(s)	277, 290, 383, 404, 560, 576, 605
TspRI	CASTG	2 cut(s)	68, 607
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.