Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009373

Physical Location & Seq

Genomic Coordinates Reverse (-)

86938932 .. 86942169

Gene Structure 3238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG650800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCAGACGAACCCACCCCAGAACCCGGAACCAGCACCTCCTCCTCCTCCTCCTCCGCCGTCAACGGCGGCAAGACCGTCAGCGAATGCCAGGACATGATTCGGAGAAGCCTCCGAACTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATTGGGGACGGGTTCATCAAGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGGATACACCCGCGGCGGAGGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAGTAGTGATACATGAGCTAATTCATGCTTTTGATGATTGTCGGGCTGCAAACTTGAACTGGGCTAATTGCGCTCATCATGCTTGTAGCGAGATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTATAAACGTGAATTTTTGCGGGGTTTTATGAAGATTCGAGGCCATGAACAAGTGAGTTTCTCAGCTTCAATTGTAATAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M76

Protein Analysis

165

Amino Acids

18.06

Weight (kDa)

7.13

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	29 - 154	3e-41	Peptidase M76 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03420 AT3G03420
fragaria_vesca	FvH4_2g09970 FvH4_2g09970 FvH4_2g09970 FvH4_2g09970
malus_domestica	MD09G1020000.v1.1 MD15G1129500.v1.1
prunus_persica	Prupe.3G296400_v2.0.a1 Prupe.3G296400_v2.0.a1
pyrus_communis	pycom15g11670
rosa_chinensis	RchiOBHm_Chr2g0173661
rosa_laevigata	RLG00000022212
rosa_multiflora	Rmu_sc0002538.1_g000012
rosa_roxburghii	Rroxscaffold_2G00078710
rosa_rugosa	Rorug02G0572000 Rorug02G0572100 Rorug02G0572200
rosa_samantha	Rh2AG650800 Rh2CG626100 Rh2DG676500
rosa_wichuraiana	Rw2G053410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	6 cut(s)	57, 69, 229, 231, 234, 430
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	343, 480
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	2 cut(s)	304, 476
AluI	AGCT	2 cut(s)	304, 476
AoxI	GGCC	3 cut(s)	189, 388, 451
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	359
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	139, 413
BalI	TGGCCA	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	2 cut(s)	118, 399
BceAI	ACGGC	3 cut(s)	44, 82, 176
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	3 cut(s)	70, 232, 333
BlsI	GCNGC	3 cut(s)	71, 233, 334
Bme1390I	CCNGG	2 cut(s)	27, 92
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	27, 92
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	161, 170
BpuMI	CCSGG	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	5 cut(s)	31, 34, 37, 40, 43
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	191, 390, 453
BsiSI	CCGG	2 cut(s)	27, 216
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	3 cut(s)	191, 390, 453
BspACI	CCGC	6 cut(s)	57, 69, 229, 231, 234, 430
BspANI	GGCC	3 cut(s)	191, 390, 453
BspCNI	CTCAG	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	2 cut(s)	395, 472
BstDSI	CCRYGG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 365
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	25, 90
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	191, 390, 453
BtgI	CCRYGG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	388
CfoI	GCGC	1 cut(s)	359
Cfr42I	CCGCGG	1 cut(s)	232
CviAII	CATG	7 cut(s)	97, 262, 268, 299, 311, 365, 455
CviJI	RGCY	8 cut(s)	111, 191, 304, 332, 350, 390, 453, 476
CviKI_1	RGCY	8 cut(s)	111, 191, 304, 332, 350, 390, 453, 476
DdeI	CTNAG	2 cut(s)	395, 472
EaeI	YGGCCR	1 cut(s)	388
EciI	GGCGGA	2 cut(s)	46, 249
EcoRII	CCWGG	1 cut(s)	90
FaeI	CATG	7 cut(s)	100, 265, 271, 302, 314, 368, 458
FaiI	YATR	9 cut(s)	98, 263, 269, 300, 312, 366, 414, 440, 456
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	7 cut(s)	96, 261, 267, 298, 310, 364, 454
FauI	CCCGC	2 cut(s)	236, 423
Fnu4HI	GCNGC	3 cut(s)	70, 232, 333
Fsp4HI	GCNGC	3 cut(s)	70, 232, 333
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	3 cut(s)	70, 232, 333
GsuI	CTGGAG	2 cut(s)	161, 170
HaeIII	GGCC	3 cut(s)	191, 390, 453
HapII	CCGG	2 cut(s)	27, 216
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	7 cut(s)	100, 265, 271, 302, 314, 368, 458
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	2 cut(s)	64, 283
HindII	GTYRAC	2 cut(s)	64, 283
HinfI	GANTC	3 cut(s)	100, 379, 445
HpaII	CCGG	2 cut(s)	27, 216
HphI	GGTGA	2 cut(s)	139, 413
Hpy166II	GTNNAC	2 cut(s)	64, 283
Hpy188I	TCNGA	3 cut(s)	105, 116, 123
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	64, 283
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	2 cut(s)	271, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 365
HpyF3I	CTNAG	2 cut(s)	395, 472
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	7 cut(s)	100, 265, 271, 302, 314, 368, 458
HspAI	GCGC	1 cut(s)	357
KspI	CCGCGG	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	418
MboII	GAAGA	3 cut(s)	217, 220, 454
MfeI	CAATTG	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	5 cut(s)	306, 352, 422, 480, 493
MluNI	TGGCCA	1 cut(s)	390
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
MslI	CAYNNNNRTG	2 cut(s)	266, 396
Msp20I	TGGCCA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	2 cut(s)	27, 216
MspR9I	CCNGG	2 cut(s)	27, 92
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	356, 365
NciI	CCSGG	1 cut(s)	27
NlaIII	CATG	7 cut(s)	100, 265, 271, 302, 314, 368, 458
NlaIV	GGNNCC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	271
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	100, 379, 445
PkrI	GCNGC	3 cut(s)	71, 233, 334
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	266, 396
SacII	CCGCGG	1 cut(s)	232
SatI	GCNGC	3 cut(s)	70, 232, 333
ScrFI	CCNGG	2 cut(s)	27, 92
SetI	ASST	5 cut(s)	41, 282, 306, 421, 478
SfaNI	GCATC	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	266, 396
Sse9I	AATT	5 cut(s)	306, 352, 422, 480, 493
SsiI	CCGC	6 cut(s)	57, 69, 229, 231, 234, 430
StyD4I	CCNGG	2 cut(s)	25, 90
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	1 cut(s)	448
TasI	AATT	5 cut(s)	306, 352, 422, 480, 493
TauI	GCSGC	2 cut(s)	72, 234
TfiI	GAWTC	3 cut(s)	100, 379, 445
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	6 cut(s)	172, 185, 278, 299, 455, 471
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.