AT3G03430

calcium-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006584
Physical Location & Seq
Forward (+)
814181 .. 814888
708 bp
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UTR
Exon/CDS
Intron
AT3G03430.1

Sequence Viewer

Length: 252 bp
ATGGCTGACGCAACAGAAAAAGCTGAGCATGACCGTATTTTCAAGAAATTTGATGCTAATGGAGATGGAAAAATCTCAGCGGCCGAGCTTGGAGATGCTCTCAAGAACCTTGGCTCGGTCACACACGAGGACATTAAGCGTATGATGGCAGAGATTGATACCGATGGCGATGGATACATCTCGTACCAAGAATTCATTGATTTCGCAAGTGCCAATCGTGGTCTTATGAAAGACGTTGCCAAGATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1

Protein Analysis

83

Amino Acids

9.16

Weight (kDa)

4.72

Isoelectric Point (pI)

9.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 11 - 37 3.4e-08 EF hand domain
EF-hand_7 PF13499 12 - 69 4.7e-17 EF-hand domain pair
EF-hand_6 PF13405 12 - 38 4.3e-08 EF-hand domain
AIF-1 PF21008 12 - 73 3.6e-07 Allograft inflammatory factor 1
EF-hand_5 PF13202 13 - 31 2.2e-07 EF hand
EF-hand_8 PF13833 23 - 69 1.6e-08 EF-hand domain pair
EF-hand_1 PF00036 44 - 68 4.7e-09 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 2 cut(s) 47, 191
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 23, 88
AluI AGCT 2 cut(s) 23, 88
AoxI GGCC 1 cut(s) 81
ApoI RAATTY 2 cut(s) 47, 191
BauI CACGAG 1 cut(s) 125
BccI CCATC 4 cut(s) 59, 139, 158, 164
BciVI GTATCC 1 cut(s) 167
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 82
BmsI GCATC 2 cut(s) 43, 85
BplI GAGNNNNNCTC 2 cut(s) 84, 116
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 15, 90
BseX3I CGGCCG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 115
BsnI GGCC 1 cut(s) 83
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 16, 89
BssECI CCNNGG 1 cut(s) 109
BssSI CACGAG 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 24, 76
BstMCI CGRYCG 1 cut(s) 84
BstZI CGGCCG 1 cut(s) 81
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 183
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 29
CviJI RGCY 5 cut(s) 5, 23, 83, 88, 114
CviKI_1 RGCY 5 cut(s) 5, 23, 83, 88, 114
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 24, 76
EaeI YGGCCR 1 cut(s) 81
EagI CGGCCG 1 cut(s) 81
EclXI CGGCCG 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 109
Eco52I CGGCCG 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 32
FaiI YATR 3 cut(s) 30, 143, 227
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 83
HgaI GACGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 32
Hpy188III TCNNGA 2 cut(s) 43, 103
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 24, 76
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 1 cut(s) 32
LweI GCATC 2 cut(s) 43, 85
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 118
MluCI AATT 2 cut(s) 47, 191
MnlI CCTC 1 cut(s) 121
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 80
NlaIII CATG 1 cut(s) 32
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 82
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 81
SetI ASST 4 cut(s) 25, 90, 111, 237
SfaNI GCATC 2 cut(s) 43, 85
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 47, 191
SsiI CCGC 1 cut(s) 80
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 237
TaqII GACCGA 1 cut(s) 106
TasI AATT 2 cut(s) 47, 191
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 184, 242
XapI RAATTY 2 cut(s) 47, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.