AT5G17480

calcium-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006584
Physical Location & Seq
Forward (+)
5762600 .. 5763202
603 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17480.1

Sequence Viewer

Length: 252 bp
ATGGCTGATGCAACGGAGAAAGCCGAGCACGACCGTATTTTCAAGAAATTTGATGCTAATGGTGACGGAAAAATTTCAGCAGCCGAACTCGAAGAAGCTCTTAAGACACTTGGTTCGGTAACAGCTGATGACGTCAAACGTATGATGGCTGAAATTGATACTGATGGTGATGGAAACATATCGTATCAAGAATTCACTGATTTTGCAGGTGCCAATCGTGGACTTATGAAGGATGTTGCCAAAATTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1

Protein Analysis

83

Amino Acids

9.05

Weight (kDa)

4.53

Isoelectric Point (pI)

15.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 11 - 37 2.2e-08 EF hand domain
EF-hand_7 PF13499 12 - 68 9e-16 EF-hand domain pair
EF-hand_6 PF13405 12 - 38 7e-08 EF-hand domain
EF-hand_5 PF13202 13 - 32 8.9e-08 EF hand
EF-hand_8 PF13833 22 - 68 4.8e-08 EF-hand domain pair
EF-hand_1 PF00036 44 - 68 1.1e-07 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 197
AatII GACGTC 1 cut(s) 135
Acc36I ACCTGC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 209
AcsI RAATTY 4 cut(s) 47, 72, 191, 243
AcyI GRCGYC 1 cut(s) 132
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 98, 125
AluI AGCT 2 cut(s) 98, 125
Alw21I GWGCWC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 4 cut(s) 47, 72, 191, 243
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
Asp700I GAANNNNTTC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 74, 179
BanI GGYRCC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 139, 158, 164
BfrI CTTAAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 132
BseGI GGATG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 101
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 197
CviJI RGCY 6 cut(s) 5, 23, 83, 98, 125, 149
CviKI_1 RGCY 6 cut(s) 5, 23, 83, 98, 125, 149
EcoRI GAATTC 1 cut(s) 191
FaiI YATR 3 cut(s) 143, 179, 227
FalI AAGNNNNNCTT 2 cut(s) 84, 116
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 132
HphI GGTGA 2 cut(s) 74, 179
Hpy166II GTNNAC 1 cut(s) 221
Hpy188III TCNNGA 2 cut(s) 43, 188
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 2 cut(s) 132, 139
HpyCH4V TGCA 2 cut(s) 11, 206
HpySE526I ACGT 2 cut(s) 132, 139
Hsp92I GRCGYC 1 cut(s) 132
LpnPI CCDG 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 43
MaeII ACGT 2 cut(s) 132, 139
MaeIII GTNAC 2 cut(s) 62, 118
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 5 cut(s) 47, 72, 153, 191, 243
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 125
MspCI CTTAAG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 211
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 62
PaqCI CACCTGC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 73
PkrI GCNGC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 30
SetI ASST 5 cut(s) 100, 127, 135, 142, 211
SfaNI GCATC 1 cut(s) 43
SgeI CNNG 8 cut(s) 37, 41, 55, 101, 122, 200, 219, 230
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 5 cut(s) 47, 72, 153, 191, 243
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 2 cut(s) 135, 142
TaqI TCGA 1 cut(s) 90
TasI AATT 5 cut(s) 47, 72, 153, 191, 243
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 29, 81
TspRI CASTG 1 cut(s) 202
Vha464I CTTAAG 1 cut(s) 101
XapI RAATTY 4 cut(s) 47, 72, 191, 243
XmnI GAANNNNTTC 1 cut(s) 73
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.