EF-hand domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03430 AT5G17480 |
| fragaria_vesca | FvH4_1g28900 FvH4_3g11850 |
| malus_domestica | MD05G1258400.v1.1 MD09G1262700.v1.1 MD17G1257600.v1.1 |
| prunus_persica | Prupe.3G160400_v2.0.a1 |
| pyrus_communis | pycom17g25970 |
| rosa_chinensis | RchiOBHm_Chr3g0493401 RchiOBHm_Chr5g0019281 |
| rosa_laevigata | RLG00000032434 |
| rosa_multiflora | Rmu_sc0000828.1_g000021 Rmu_sc0004608.1_g000003 Rmu_sc0010338.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00058720 Rroxscaffold_6G00391610 |
| rosa_rugosa | Rorug03G0260800 Rorug05G0049300 |
| rosa_samantha | Rh3CG343600 Rh5AG140300 Rh5BG139400 Rh5CG150700 Rh5DG139900 |
| rosa_wichuraiana | Rw3G027220 Rw5G012480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 8, 21 |
| AcsI | RAATTY | 1 cut(s) | 143 |
| AcuI | CTGAAG | 1 cut(s) | 27 |
| AgsI | TTSAA | 2 cut(s) | 49, 109 |
| AluBI | AGCT | 1 cut(s) | 94 |
| AluI | AGCT | 1 cut(s) | 94 |
| AlwI | GGATC | 2 cut(s) | 8, 21 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApoI | RAATTY | 1 cut(s) | 143 |
| AspLEI | GCGC | 1 cut(s) | 42 |
| BamHI | GGATCC | 1 cut(s) | 13 |
| BccI | CCATC | 2 cut(s) | 65, 145 |
| BceAI | ACGGC | 2 cut(s) | 187, 193 |
| BfaI | CTAG | 1 cut(s) | 95 |
| BmiI | GGNNCC | 1 cut(s) | 15 |
| BmsI | GCATC | 2 cut(s) | 91, 110 |
| BsaJI | CCNNGG | 2 cut(s) | 115, 223 |
| BseDI | CCNNGG | 2 cut(s) | 115, 223 |
| BseGI | GGATG | 2 cut(s) | 106, 125 |
| BseRI | GAGGAG | 1 cut(s) | 209 |
| Bsh1285I | CGRYCG | 1 cut(s) | 34 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BsiEI | CGRYCG | 1 cut(s) | 34 |
| BsnI | GGCC | 1 cut(s) | 29 |
| Bsp143I | GATC | 1 cut(s) | 13 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspHI | TCATGA | 1 cut(s) | 147 |
| BspLI | GGNNCC | 1 cut(s) | 15 |
| BspPI | GGATC | 2 cut(s) | 8, 21 |
| BssECI | CCNNGG | 2 cut(s) | 115, 223 |
| BssMI | GATC | 1 cut(s) | 13 |
| BssT1I | CCWWGG | 1 cut(s) | 115 |
| Bst4CI | ACNGT | 2 cut(s) | 35, 224 |
| Bst6I | CTCTTC | 2 cut(s) | 3, 150 |
| BstDSI | CCRYGG | 1 cut(s) | 223 |
| BstF5I | GGATG | 2 cut(s) | 106, 125 |
| BstHHI | GCGC | 1 cut(s) | 42 |
| BstKTI | GATC | 1 cut(s) | 16 |
| BstMBI | GATC | 1 cut(s) | 13 |
| BstMCI | CGRYCG | 1 cut(s) | 34 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 110 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtgI | CCRYGG | 1 cut(s) | 223 |
| BtgZI | GCGATG | 1 cut(s) | 84 |
| BtsCI | GGATG | 2 cut(s) | 106, 125 |
| CciI | TCATGA | 1 cut(s) | 147 |
| CfoI | GCGC | 1 cut(s) | 42 |
| CviAII | CATG | 1 cut(s) | 148 |
| CviJI | RGCY | 5 cut(s) | 5, 29, 94, 113, 180 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 29, 94, 113, 180 |
| DpnI | GATC | 1 cut(s) | 15 |
| DpnII | GATC | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 2 cut(s) | 3, 150 |
| EarI | CTCTTC | 2 cut(s) | 3, 150 |
| Eco130I | CCWWGG | 1 cut(s) | 115 |
| Eco57I | CTGAAG | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 1 cut(s) | 115 |
| EcoT22I | ATGCAT | 1 cut(s) | 106 |
| ErhI | CCWWGG | 1 cut(s) | 115 |
| FaeI | CATG | 1 cut(s) | 151 |
| FaiI | YATR | 3 cut(s) | 149, 201, 203 |
| FatI | CATG | 1 cut(s) | 147 |
| FokI | GGATG | 2 cut(s) | 113, 132 |
| FspBI | CTAG | 1 cut(s) | 95 |
| GlaI | GCGC | 1 cut(s) | 41 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HhaI | GCGC | 1 cut(s) | 42 |
| Hin1II | CATG | 1 cut(s) | 151 |
| Hin6I | GCGC | 1 cut(s) | 40 |
| HinP1I | GCGC | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 1 cut(s) | 88 |
| Hpy188III | TCNNGA | 1 cut(s) | 148 |
| Hpy99I | CGWCG | 2 cut(s) | 173, 179 |
| HpyAV | CCTTC | 1 cut(s) | 229 |
| HpyCH4III | ACNGT | 2 cut(s) | 35, 224 |
| HpyCH4V | TGCA | 2 cut(s) | 104, 212 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 110 |
| Hsp92II | CATG | 1 cut(s) | 151 |
| HspAI | GCGC | 1 cut(s) | 40 |
| Kzo9I | GATC | 1 cut(s) | 13 |
| LpnPI | CCDG | 1 cut(s) | 144 |
| LweI | GCATC | 2 cut(s) | 91, 110 |
| MaeI | CTAG | 1 cut(s) | 95 |
| MalI | GATC | 1 cut(s) | 15 |
| MboI | GATC | 1 cut(s) | 13 |
| MboII | GAAGA | 3 cut(s) | 20, 146, 167 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MluCI | AATT | 2 cut(s) | 138, 143 |
| MnlI | CCTC | 2 cut(s) | 4, 187 |
| Mph1103I | ATGCAT | 1 cut(s) | 106 |
| MseI | TTAA | 2 cut(s) | 141, 256 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 110 |
| NdeII | GATC | 1 cut(s) | 13 |
| NlaIII | CATG | 1 cut(s) | 151 |
| NlaIV | GGNNCC | 1 cut(s) | 15 |
| NsiI | ATGCAT | 1 cut(s) | 106 |
| PagI | TCATGA | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 1 cut(s) | 15 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| SaqAI | TTAA | 2 cut(s) | 141, 256 |
| Sau3AI | GATC | 1 cut(s) | 13 |
| SetI | ASST | 1 cut(s) | 96 |
| SfaNI | GCATC | 2 cut(s) | 91, 110 |
| SgeI | CNNG | 8 cut(s) | 47, 61, 107, 128, 143, 160, 205, 236 |
| Sse9I | AATT | 2 cut(s) | 138, 143 |
| SspMI | CTAG | 1 cut(s) | 95 |
| StyI | CCWWGG | 1 cut(s) | 115 |
| TaaI | ACNGT | 2 cut(s) | 35, 224 |
| TaqI | TCGA | 1 cut(s) | 57 |
| TasI | AATT | 2 cut(s) | 138, 143 |
| Tru1I | TTAA | 2 cut(s) | 141, 256 |
| Tru9I | TTAA | 2 cut(s) | 141, 256 |
| TspDTI | ATGAA | 3 cut(s) | 136, 172, 248 |
| XapI | RAATTY | 1 cut(s) | 143 |
| XspI | CTAG | 1 cut(s) | 95 |
| Zsp2I | ATGCAT | 1 cut(s) | 106 |