Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006584

Physical Location & Seq

Genomic Coordinates Reverse (-)

39457006 .. 39457257

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1258400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCTGATGATCATGCCAAGGCTGGATGTGAGCGTGTGTTTAAGCGATTTGATTACAATGGCGATGGCAAGATTTCATTGACTGAGCTCGCTGATGCACTCAAAGCACTTGGCTCTTCTTCGCCGGAAGAAGTCCGTCAGAGAATGGAGGAGATCGACAAGGATCGCGATGGGTTCATTTCACTCGAGGAGCTGTTCGATTTCCAACATGCCAACCCTGATTTGATGAAGGAAGTCGTCAAGCAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

84

Amino Acids

9.45

Weight (kDa)

4.7

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	10 - 37	3.5e-07	EF hand domain
EF-hand_7	PF13499	10 - 67	2.6e-14	EF-hand domain pair
EF-hand_6	PF13405	11 - 38	9.5e-08	EF-hand domain
EF-hand_5	PF13202	13 - 31	2.5e-06	EF hand
EF-hand_1	PF00036	44 - 68	5.1e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03430 AT5G17480
fragaria_vesca	FvH4_1g28900 FvH4_3g11850
malus_domestica	MD05G1258400.v1.1 MD09G1262700.v1.1 MD17G1257600.v1.1
prunus_persica	Prupe.3G160400_v2.0.a1
pyrus_communis	pycom17g25970
rosa_chinensis	RchiOBHm_Chr3g0493401 RchiOBHm_Chr5g0019281
rosa_laevigata	RLG00000032434
rosa_multiflora	Rmu_sc0000828.1_g000021 Rmu_sc0004608.1_g000003 Rmu_sc0010338.1_g000013
rosa_roxburghii	Rroxscaffold_1G00058720 Rroxscaffold_6G00391610
rosa_rugosa	Rorug03G0260800 Rorug05G0049300
rosa_samantha	Rh3CG343600 Rh5AG140300 Rh5BG139400 Rh5CG150700 Rh5DG139900
rosa_wichuraiana	Rw3G027220 Rw5G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AclWI	GGATC	1 cut(s)	171
AluBI	AGCT	2 cut(s)	88, 193
AluI	AGCT	2 cut(s)	88, 193
Alw21I	GWGCWC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	171
Ama87I	CYCGRG	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	2 cut(s)	59, 164
BclI	TGATCA	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	2 cut(s)	164, 203
Bsh1236I	CGCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	10, 153, 163
Bsp68I	TCGCGA	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	10, 153, 163
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	3 cut(s)	13, 156, 166
BstMBI	GATC	3 cut(s)	10, 153, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	212
BstUI	CGCG	1 cut(s)	168
BtgZI	GCGATG	2 cut(s)	78, 183
BtsCI	GGATG	1 cut(s)	32
BtuMI	TCGCGA	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	90
CviAII	CATG	2 cut(s)	14, 209
CviJI	RGCY	5 cut(s)	5, 23, 88, 114, 193
CviKI_1	RGCY	5 cut(s)	5, 23, 88, 114, 193
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	3 cut(s)	12, 155, 165
DpnII	GATC	3 cut(s)	10, 153, 163
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	2 cut(s)	17, 212
FaiI	YATR	2 cut(s)	15, 210
FatI	CATG	2 cut(s)	13, 208
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	90
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	2 cut(s)	17, 212
HpaII	CCGG	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	17, 212
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 153, 163
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	3 cut(s)	9, 138, 231
LweI	GCATC	1 cut(s)	85
MalI	GATC	3 cut(s)	12, 155, 165
MboI	GATC	3 cut(s)	10, 153, 163
MboII	GAAGA	3 cut(s)	108, 111, 140
MhlI	GDGCHC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	2 cut(s)	142, 181
MseI	TTAA	1 cut(s)	42
MspI	CCGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	3 cut(s)	10, 153, 163
NlaIII	CATG	2 cut(s)	17, 212
NruI	TCGCGA	1 cut(s)	168
NspI	RCATGY	1 cut(s)	212
PaeR7I	CTCGAG	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	90
PspXI	VCTCGAGB	1 cut(s)	185
RruI	TCGCGA	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	10, 153, 163
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	2 cut(s)	90, 195
SfaNI	GCATC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	156, 186, 198
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	66, 166, 242
TspGWI	ACGGA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.