FvH4_3g11850

Polcalcin

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
7001441 .. 7001701
261 bp
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UTR
Exon/CDS
Intron
FvH4_3g11850.t1

Sequence Viewer

Length: 261 bp
ATGGCTGATGATGCTGATGCTAAGGCTGGATGTGAGCGTATCTTTAAACGTTTTGATTACAATGGTGACGGGAAAATCTCCCTGAACGAGCTTGCCGATGCACTCAAAGCACTCGGCTCTTCGTCGGAAGAAGAAGTGCATCAACGAATGAAGGAGATCGATATGGATCATGACGGATTCATTTCACTGGAGGAGCTCTTCGCCTTCCAACGTGCCAACCCTGACTTGATGAAGGAAGTCATCAAGAAACTTTCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.72

Weight (kDa)

4.7

Isoelectric Point (pI)

26.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 11 - 38 6.1e-08 EF hand domain
EF-hand_7 PF13499 11 - 69 3.2e-13 EF-hand domain pair
EF-hand_6 PF13405 12 - 39 3.4e-08 EF-hand domain
EF-hand_5 PF13202 14 - 32 3.5e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 49
AclWI GGATC 1 cut(s) 174
AluBI AGCT 2 cut(s) 91, 196
AluI AGCT 2 cut(s) 91, 196
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BmsI GCATC 3 cut(s) 7, 88, 148
BpmI CTGGAG 1 cut(s) 209
Bpu10I CCTNAGC 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 159
BseGI GGATG 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 165
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 156, 166
BspDI ATCGAT 1 cut(s) 159
BspHI TCATGA 1 cut(s) 169
BspPI GGATC 1 cut(s) 174
BspQI GCTCTTC 2 cut(s) 124, 203
BsrI ACTGG 1 cut(s) 192
BssMI GATC 2 cut(s) 156, 166
Bst6I CTCTTC 2 cut(s) 124, 203
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 2 cut(s) 159, 169
BstMBI GATC 2 cut(s) 156, 166
BstMWI GCNNNNNNNGC 2 cut(s) 11, 107
Bsu15I ATCGAT 1 cut(s) 159
BsuTUI ATCGAT 1 cut(s) 159
BtsCI GGATG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 93
CciI TCATGA 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 159
CviAII CATG 1 cut(s) 170
CviJI RGCY 5 cut(s) 5, 26, 91, 117, 196
CviKI_1 RGCY 5 cut(s) 5, 26, 91, 117, 196
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 158, 168
DpnII GATC 2 cut(s) 156, 166
DraI TTTAAA 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 124, 203
EarI CTCTTC 2 cut(s) 124, 203
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 1 cut(s) 173
FaiI YATR 2 cut(s) 164, 171
FatI CATG 1 cut(s) 169
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 209
Hin1II CATG 1 cut(s) 173
HinfI GANTC 1 cut(s) 177
HphI GGTGA 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 170, 244
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 145, 214, 226
HpyCH4IV ACGT 2 cut(s) 49, 211
HpyCH4V TGCA 2 cut(s) 101, 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 107
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 2 cut(s) 49, 211
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 2 cut(s) 156, 166
LguI GCTCTTC 2 cut(s) 124, 203
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 4 cut(s) 12, 95, 173, 234
LweI GCATC 3 cut(s) 7, 88, 148
MaeII ACGT 2 cut(s) 49, 211
MaeIII GTNAC 1 cut(s) 65
MalI GATC 2 cut(s) 158, 168
MboI GATC 2 cut(s) 156, 166
MboII GAAGA 4 cut(s) 111, 140, 143, 190
MhlI GDGCHC 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 105, 232
MnlI CCTC 1 cut(s) 184
MseI TTAA 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 11, 107
NdeII GATC 2 cut(s) 156, 166
NlaIII CATG 1 cut(s) 173
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 65
PagI TCATGA 1 cut(s) 169
PciSI GCTCTTC 2 cut(s) 124, 203
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 198
Psp1406I AACGTT 1 cut(s) 49
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 2 cut(s) 124, 203
SaqAI TTAA 1 cut(s) 45
Sau3AI GATC 2 cut(s) 156, 166
SduI GDGCHC 1 cut(s) 198
SetI ASST 4 cut(s) 52, 93, 198, 214
SfaNI GCATC 3 cut(s) 7, 88, 148
SstI GAGCTC 1 cut(s) 198
TaiI ACGT 2 cut(s) 52, 214
TaqI TCGA 1 cut(s) 159
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 164, 169, 245
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.