Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006584

Physical Location & Seq

Genomic Coordinates Reverse (-)

31817961 .. 31818218

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1257600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCTGAAGAAGATCCTAAAGAAAAGGCTGATCGAGAGAGAATTTTCAAGCGGTTTGACACCAACGGCGATGGCCTAATTTCTGCAACCGAGCTAGGAGATGCATTAAAAACACTAGGCTGTGTTCAACCAGATGAAGTGAAGTTTATGATGGCGGAGATTGATACCGATGGTGATGGCTTCATTTCGTACAAGGAGTACTTGGATTTTGCTCTAGCTAACCGTGGTTTAATTAAGGATGTTGCCAAGATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

86

Amino Acids

9.54

Weight (kDa)

4.47

Isoelectric Point (pI)

12.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	13 - 39	4.1e-07	EF hand domain
EF-hand_7	PF13499	14 - 71	4.7e-15	EF-hand domain pair
EF-hand_6	PF13405	14 - 40	6.7e-08	EF-hand domain
EF-hand_5	PF13202	15 - 33	5.1e-06	EF hand
EF-hand_1	PF00036	46 - 70	5.6e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03430 AT5G17480
fragaria_vesca	FvH4_1g28900 FvH4_3g11850
malus_domestica	MD05G1258400.v1.1 MD09G1262700.v1.1 MD17G1257600.v1.1
prunus_persica	Prupe.3G160400_v2.0.a1
pyrus_communis	pycom17g25970
rosa_chinensis	RchiOBHm_Chr3g0493401 RchiOBHm_Chr5g0019281
rosa_laevigata	RLG00000032434
rosa_multiflora	Rmu_sc0000828.1_g000021 Rmu_sc0004608.1_g000003 Rmu_sc0010338.1_g000013
rosa_roxburghii	Rroxscaffold_1G00058720 Rroxscaffold_6G00391610
rosa_rugosa	Rorug03G0260800 Rorug05G0049300
rosa_samantha	Rh3CG343600 Rh5AG140300 Rh5BG139400 Rh5CG150700 Rh5DG139900
rosa_wichuraiana	Rw3G027220 Rw5G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	52, 155
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	2 cut(s)	191, 200
AgsI	TTSAA	2 cut(s)	49, 128
AluBI	AGCT	2 cut(s)	94, 218
AluI	AGCT	2 cut(s)	94, 218
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	185
BccI	CCATC	4 cut(s)	65, 145, 164, 170
BceAI	ACGGC	1 cut(s)	82
BfaI	CTAG	3 cut(s)	95, 116, 215
BmcAI	AGTACT	1 cut(s)	200
BmsI	GCATC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	13, 31
BspACI	CCGC	2 cut(s)	52, 155
BspANI	GGCC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	13, 31
Bst4CI	ACNGT	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	16, 34
BstMBI	GATC	2 cut(s)	13, 31
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	190, 199
CviJI	RGCY	7 cut(s)	5, 29, 75, 94, 120, 180, 218
CviKI_1	RGCY	7 cut(s)	5, 29, 75, 94, 120, 180, 218
CviQI	GTAC	2 cut(s)	190, 199
DpnI	GATC	2 cut(s)	15, 33
DpnII	GATC	2 cut(s)	13, 31
EciI	GGCGGA	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	106
FaiI	YATR	1 cut(s)	149
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FokI	GGATG	1 cut(s)	251
FspBI	CTAG	3 cut(s)	95, 116, 215
HaeIII	GGCC	1 cut(s)	75
HphI	GGTGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	86, 104
Kzo9I	GATC	2 cut(s)	13, 31
LpnPI	CCDG	1 cut(s)	144
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	3 cut(s)	95, 116, 215
MalI	GATC	2 cut(s)	15, 33
MboI	GATC	2 cut(s)	13, 31
MboII	GAAGA	2 cut(s)	20, 23
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	3 cut(s)	42, 78, 231
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	3 cut(s)	107, 230, 234
NdeII	GATC	2 cut(s)	13, 31
NsiI	ATGCAT	1 cut(s)	106
PacI	TTAATTAA	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	191, 200
RsaNI	GTAC	2 cut(s)	190, 199
SaqAI	TTAA	3 cut(s)	107, 230, 234
Sau3AI	GATC	2 cut(s)	13, 31
ScaI	AGTACT	1 cut(s)	200
SetI	ASST	2 cut(s)	96, 220
SfaNI	GCATC	1 cut(s)	91
Sse9I	AATT	3 cut(s)	42, 78, 231
SsiI	CCGC	2 cut(s)	52, 155
SspMI	CTAG	3 cut(s)	95, 116, 215
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	42, 78, 231
TatI	WGTACW	1 cut(s)	198
Tru1I	TTAA	3 cut(s)	107, 230, 234
Tru9I	TTAA	3 cut(s)	107, 230, 234
TspDTI	ATGAA	2 cut(s)	150, 172
XapI	RAATTY	1 cut(s)	42
XspI	CTAG	3 cut(s)	95, 116, 215
ZrmI	AGTACT	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.