Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011692

Physical Location & Seq

Genomic Coordinates Reverse (-)

1053360 .. 1055196

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGTGGAAGAAGGCGGCGTAGTTGTGAATCAAGGAGGAGATCAGGAGGTGGTGGATTTGCCTCCGGGGTTTCGGTTTCACCCTACTGATGAAGAGATAATAACTCACTACCTCAAAGAGAAGGTCTTCAACATCCGATTTACCGCGGCAGCGATTGGTCAAGCCGACCTCAACAAGAACGAGCCATGGGATCTACCAAAGATTGCAAAGATGGGGGAGAAGGAGTTTTACTTTTTCTGCCAGAGGGATCGGAAGTATCCGACCGGGATGAGGACGAACCGTGCGACCGTGTCTGGTTATTGGAAGGCGACCGGGAAGGACAAGGAGATCTTTAGAGGCAAAGGTTGTCTTGTTGGGATGAAGAAAACACTTGTTTTCTATACAGGAAGAGCTCCTAAAGGTGAAAAGACCAATTGGGTTATGCATGAATATCGTCTTGATGGAAAATATTCTTATCATAACCTCCCCAAAACCGCAAGGGATGAATGGGTGGTGTGTAGGGTTTTTCACAAGAACGCTCCTAGTACTACAATCACTACTACAAAACAACTCTCAAGGATTGATTCTCTTGATAACATTGATCATCTCTTAGACTTCTCATCTCTCCCTCCTCTCATAGATCCGGGTTTCTTGGGTCAACCCGGCCCAAGCTTCTCCGGTGCCCGTCAACAACACGATCTCAAACCTGTTCTCCACCATCCTACAACCGCACCAGTCGACAACACTTACCTTCCTACCCAAGCTCTCAATTTCCCTTACCACTCGGTCCATAATTCCGGATCTGATTTCGGCTACGGGGCAGGTTCAGGCAATAATAACAAAGGTATGATCAAGTTGGAGCATTCTCTTGTGAGTGTGTCTCAAGAAACCGGTTTGAGTTCCGATGTGAACACAACCGCAACGCCAGAGATATCTTCTTATCCAATGATGATGAATCCGGCAATGATGGATGGTAGCAAGTCAGCGTGTGATGGTCTTGATGACTTGATCTTCTGGGAAGATTTATATACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0010271 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1900055 GO:1900057 GO:1901401 GO:1901403 GO:1901404 GO:1901406 GO:1903506 GO:1903648 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

338

Amino Acids

37.78

Weight (kDa)

6.31

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	21 - 146	1.3e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04060 AT5G18270 AT5G18270
fragaria_vesca	FvH4_1g27900
malus_domestica	MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica	Prupe.7G001400_v2.0.a1
pyrus_communis	pycom12g00110 pycom49g00070
rosa_chinensis	RchiOBHm_Chr3g0497471
rosa_laevigata	RLG00000022457
rosa_multiflora	Rmu_sc0008086.1_g000018
rosa_roxburghii	Rroxscaffold_6G00387990
rosa_rugosa	Rorug03G0293100
rosa_samantha	Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana	Rw3G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	791
AccB1I	GGYRCC	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	1 cut(s)	146
AccIII	TCCGGA	1 cut(s)	776
AciI	CCGC	6 cut(s)	15, 144, 146, 474, 708, 897
AclWI	GGATC	4 cut(s)	198, 255, 614, 787
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgeI	ACCGGT	1 cut(s)	869
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	4 cut(s)	392, 651, 743, 1014
AluI	AGCT	4 cut(s)	392, 651, 743, 1014
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	864
AlwI	GGATC	4 cut(s)	198, 255, 614, 787
Aor13HI	TCCGGA	1 cut(s)	776
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AsiGI	ACCGGT	1 cut(s)	869
Asp700I	GAANNNNTTC	2 cut(s)	125, 448
AspS9I	GGNCC	2 cut(s)	644, 766
AsuC2I	CCSGG	5 cut(s)	66, 265, 313, 624, 642
AsuHPI	GGTGA	2 cut(s)	71, 413
AvaII	GGWCC	1 cut(s)	766
BaeGI	GKGCMC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	6 cut(s)	205, 434, 705, 940, 944, 965
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciVI	GTATCC	1 cut(s)	267
BclI	TGATCA	2 cut(s)	580, 828
BcnI	CCSGG	5 cut(s)	66, 265, 313, 624, 642
BcoDI	GTCTC	1 cut(s)	864
BfaI	CTAG	2 cut(s)	522, 1011
BfuAI	ACCTGC	1 cut(s)	791
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	3 cut(s)	16, 147, 150
BlsI	GCNGC	3 cut(s)	17, 148, 151
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	5 cut(s)	66, 265, 313, 624, 642
Bme18I	GGWCC	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	644, 766
BmiI	GGNNCC	1 cut(s)	661
BmrFI	CCNGG	5 cut(s)	66, 265, 313, 624, 642
BpiI	GAAGAC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
BpuEI	CTTGAG	2 cut(s)	538, 846
BpuMI	CCSGG	5 cut(s)	66, 265, 313, 624, 642
BsaJI	CCNNGG	3 cut(s)	65, 144, 185
BsaWI	WCCGGW	3 cut(s)	656, 776, 869
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse118I	RCCGGY	1 cut(s)	869
Bse1I	ACTGG	1 cut(s)	713
Bse3DI	GCAATG	1 cut(s)	948
BseAI	TCCGGA	1 cut(s)	776
BseDI	CCNNGG	3 cut(s)	65, 144, 185
BseGI	GGATG	6 cut(s)	132, 273, 363, 487, 697, 955
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	948
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	2 cut(s)	51, 600
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	3 cut(s)	264, 288, 312
BshFI	GGCC	1 cut(s)	645
BshNI	GGYRCC	1 cut(s)	659
BshTI	ACCGGT	1 cut(s)	869
BsiEI	CGRYCG	3 cut(s)	264, 288, 312
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	9 cut(s)	65, 264, 312, 623, 642, 657, 777, 870, 938
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	864
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	1 cut(s)	645
Bsp1286I	GDGCHC	2 cut(s)	394, 664
Bsp13I	TCCGGA	1 cut(s)	776
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	6 cut(s)	15, 144, 146, 474, 708, 897
BspANI	GGCC	1 cut(s)	645
BspEI	TCCGGA	1 cut(s)	776
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	791
BspPI	GGATC	4 cut(s)	198, 255, 614, 787
BspQI	GCTCTTC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	1 cut(s)	869
BsrI	ACTGG	1 cut(s)	713
BssAI	RCCGGY	1 cut(s)	869
BssECI	CCNNGG	3 cut(s)	65, 144, 185
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	281, 289
Bst6I	CTCTTC	2 cut(s)	87, 382
BstDEI	CTNAG	1 cut(s)	589
BstDSI	CCRYGG	2 cut(s)	144, 185
BstF5I	GGATG	6 cut(s)	132, 273, 363, 487, 697, 955
BstFNI	CGCG	1 cut(s)	146
BstMAI	GTCTC	1 cut(s)	864
BstMCI	CGRYCG	3 cut(s)	264, 288, 312
BstSCI	CCNGG	5 cut(s)	64, 263, 311, 622, 640
BstSLI	GKGCMC	1 cut(s)	664
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	4 cut(s)	190, 327, 619, 779
BstYI	RGATCY	4 cut(s)	190, 327, 619, 779
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	645
BtgI	CCRYGG	2 cut(s)	144, 185
BtsCI	GGATG	6 cut(s)	132, 273, 363, 487, 697, 955
BveI	ACCTGC	1 cut(s)	791
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	2 cut(s)	644, 766
Cfr42I	CCGCGG	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	525
CspAI	ACCGGT	1 cut(s)	869
CviAII	CATG	2 cut(s)	186, 425
CviJI	RGCY	8 cut(s)	164, 184, 392, 645, 651, 743, 792, 1014
CviKI_1	RGCY	8 cut(s)	164, 184, 392, 645, 651, 743, 792, 1014
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	1 cut(s)	589
Eam1104I	CTCTTC	2 cut(s)	87, 382
EarI	CTCTTC	2 cut(s)	87, 382
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	394
Eco32I	GATATC	1 cut(s)	912
Eco47I	GGWCC	1 cut(s)	766
Eco53kI	GAGCTC	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	912
EcoT14I	CCWWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	189, 428
FalI	AAGNNNNNCTT	4 cut(s)	314, 346, 333, 365
FatI	CATG	2 cut(s)	185, 424
FbaI	TGATCA	2 cut(s)	580, 828
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	16, 147, 150
FokI	GGATG	6 cut(s)	119, 280, 370, 494, 684, 962
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	3 cut(s)	16, 147, 150
FspBI	CTAG	2 cut(s)	522, 1011
GluI	GCNGC	3 cut(s)	16, 147, 150
HaeIII	GGCC	1 cut(s)	645
HapII	CCGG	9 cut(s)	65, 264, 312, 623, 642, 657, 777, 870, 938
Hin1II	CATG	2 cut(s)	189, 428
HincII	GTYRAC	3 cut(s)	638, 668, 718
HindII	GTYRAC	3 cut(s)	638, 668, 718
HindIII	AAGCTT	1 cut(s)	649
HinfI	GANTC	3 cut(s)	28, 563, 934
HpaII	CCGG	9 cut(s)	65, 264, 312, 623, 642, 657, 777, 870, 938
HphI	GGTGA	2 cut(s)	71, 413
Hpy166II	GTNNAC	4 cut(s)	638, 668, 718, 889
Hpy188I	TCNGA	5 cut(s)	137, 252, 261, 784, 883
Hpy188III	TCNNGA	6 cut(s)	44, 437, 569, 777, 863, 977
Hpy8I	GTNNAC	4 cut(s)	638, 668, 718, 889
HpyAV	CCTTC	6 cut(s)	5, 115, 214, 298, 310, 740
HpyCH4III	ACNGT	2 cut(s)	281, 289
HpyCH4V	TGCA	2 cut(s)	206, 424
HpyF3I	CTNAG	1 cut(s)	589
Hsp92II	CATG	2 cut(s)	189, 428
Kpn2I	TCCGGA	1 cut(s)	776
Ksp22I	TGATCA	2 cut(s)	580, 828
KspI	CCGCGG	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	3 cut(s)	397, 523, 838
Lsp1109I	GCAGC	1 cut(s)	161
MaeI	CTAG	2 cut(s)	522, 1011
MboII	GAAGA	8 cut(s)	20, 104, 118, 373, 399, 906, 982, 1010
MfeI	CAATTG	1 cut(s)	412
MflI	RGATCY	4 cut(s)	190, 327, 619, 779
MhlI	GDGCHC	2 cut(s)	394, 664
MluCI	AATT	3 cut(s)	412, 748, 772
MmeI	TCCRAC	2 cut(s)	284, 816
Mph1103I	ATGCAT	1 cut(s)	426
MroI	TCCGGA	1 cut(s)	776
MroXI	GAANNNNTTC	2 cut(s)	125, 448
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	9 cut(s)	65, 264, 312, 623, 642, 657, 777, 870, 938
MspR9I	CCNGG	5 cut(s)	66, 265, 313, 624, 642
MunI	CAATTG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	841
MvnI	CGCG	1 cut(s)	146
NciI	CCSGG	5 cut(s)	66, 265, 313, 624, 642
NcoI	CCATGG	1 cut(s)	185
NlaIII	CATG	2 cut(s)	189, 428
NlaIV	GGNNCC	1 cut(s)	661
NsiI	ATGCAT	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PctI	GAATGC	1 cut(s)	841
PdmI	GAANNNNTTC	2 cut(s)	125, 448
PfeI	GAWTC	3 cut(s)	28, 563, 934
PflFI	GACNNNGTC	1 cut(s)	289
PinAI	ACCGGT	1 cut(s)	869
PkrI	GCNGC	3 cut(s)	17, 148, 151
Psp124BI	GAGCTC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	661
PspPI	GGNCC	2 cut(s)	644, 766
PsuI	RGATCY	4 cut(s)	190, 327, 619, 779
PsyI	GACNNNGTC	1 cut(s)	289
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	394
SacII	CCGCGG	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	716
SapI	GCTCTTC	1 cut(s)	382
SatI	GCNGC	3 cut(s)	16, 147, 150
Sau96I	GGNCC	2 cut(s)	644, 766
ScaI	AGTACT	1 cut(s)	526
ScrFI	CCNGG	5 cut(s)	66, 265, 313, 624, 642
SduI	GDGCHC	2 cut(s)	394, 664
Sfr303I	CCGCGG	1 cut(s)	147
SgrBI	CCGCGG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	553, 861
SmoI	CTYRAG	2 cut(s)	553, 861
Sse9I	AATT	3 cut(s)	412, 748, 772
SsiI	CCGC	6 cut(s)	15, 144, 146, 474, 708, 897
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	2 cut(s)	522, 1011
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	5 cut(s)	64, 263, 311, 622, 640
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	281, 289
TaqI	TCGA	1 cut(s)	717
TaqII	GACCGA	1 cut(s)	754
TasI	AATT	3 cut(s)	412, 748, 772
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	2 cut(s)	18, 149
TfiI	GAWTC	3 cut(s)	28, 563, 934
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	5 cut(s)	105, 374, 441, 498, 947
Tth111I	GACNNNGTC	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	2 cut(s)	125, 448
XspI	CTAG	2 cut(s)	522, 1011
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.