Rorug03G0293100
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011692
Physical Location & Seq
Reverse (-)
30018655 .. 30019104
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0293100.1

Sequence Viewer

Length: 450 bp
ATGGCTGTTTTGGAGAGCATCATCGATCACCGATCTGTTGGTCGAATGAAGGTGAGGATGTCGGTGATGGTCTGGAAAATGGATCCTGACGGAGAGGAGCTCCAATCTCATATTTTGACAATCGGAAAGGCTACTTCCCAGGTGAACAATATCCTGACGATTAAGATGCTGCACAGAAGGGCAGATCAGCGGATAACCTATTCCGGTGACTGGCATTTCGATCTGCTACAGAAGAAGACGGTCTCAAGATGTCGATCTGCGAGCTCGTCGGAGAGGTCTGCTAGTCGTGTGCATTACACGACGGCAATGGTGGTCGTGACCGGGACAAACACCTGTGACGGAAAGGCAGTGGTGCCCAGTTCTTGTTGGGTGCCAAAATCACTTTTGGGGCCCATATCAAATTGGGAGCCCAAAGAGAGTGGGAGCCCATGGCTAAGGGCCTGGAGGTAG

Protein Analysis

149

Amino Acids

16.8

Weight (kDa)

9.81

Isoelectric Point (pI)

70.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04060 AT5G18270 AT5G18270
fragaria_vesca FvH4_1g27900
malus_domestica MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica Prupe.7G001400_v2.0.a1
pyrus_communis pycom12g00110 pycom49g00070
rosa_chinensis RchiOBHm_Chr3g0497471
rosa_laevigata RLG00000022457
rosa_multiflora Rmu_sc0008086.1_g000018
rosa_roxburghii Rroxscaffold_6G00387990
rosa_rugosa Rorug03G0293100
rosa_samantha Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana Rw3G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 352, 370
AciI CCGC 1 cut(s) 190
AclWI GGATC 2 cut(s) 77, 90
AfiI CCNNNNNNNGG 1 cut(s) 210
AjnI CCWGG 2 cut(s) 138, 440
AluBI AGCT 2 cut(s) 100, 264
AluI AGCT 2 cut(s) 100, 264
Alw21I GWGCWC 2 cut(s) 102, 266
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 2 cut(s) 77, 90
AoxI GGCC 2 cut(s) 389, 438
ApaI GGGCCC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AspS9I GGNCC 3 cut(s) 389, 390, 438
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 5 cut(s) 20, 64, 76, 154, 218
BaeGI GKGCMC 2 cut(s) 357, 393
BamHI GGATCC 1 cut(s) 82
BanI GGYRCC 2 cut(s) 352, 370
BanII GRGCYC 5 cut(s) 102, 266, 393, 411, 428
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 102, 266
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 140, 442
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 3 cut(s) 140, 322, 442
BmgT120I GGNCC 3 cut(s) 389, 390, 438
BmiI GGNNCC 7 cut(s) 84, 354, 372, 390, 391, 408, 425
BmrFI CCNGG 3 cut(s) 140, 322, 442
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 2 cut(s) 27, 156
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 84, 116
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 138, 428
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 215, 357
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 253
BseBI CCWGG 2 cut(s) 140, 442
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 138, 428
BseGI GGATG 1 cut(s) 63
BseJI GATNNNNATC 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 215, 357
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 2 cut(s) 357, 393
BseXI GCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 2 cut(s) 391, 440
BshNI GGYRCC 2 cut(s) 352, 370
BshVI ATCGAT 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 102, 266
BsiSI CCGG 2 cut(s) 204, 321
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 2 cut(s) 391, 440
Bso31I GGTCTC 1 cut(s) 247
Bsp120I GGGCCC 1 cut(s) 389
Bsp1286I GDGCHC 6 cut(s) 102, 266, 357, 393, 411, 428
Bsp143I GATC 6 cut(s) 25, 32, 82, 184, 220, 254
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 1 cut(s) 190
BspANI GGCC 2 cut(s) 391, 440
BspDI ATCGAT 1 cut(s) 24
BspLI GGNNCC 7 cut(s) 84, 354, 372, 390, 391, 408, 425
BspPI GGATC 2 cut(s) 77, 90
BspT107I GGYRCC 2 cut(s) 352, 370
BspTNI GGTCTC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 2 cut(s) 215, 357
BssECI CCNNGG 2 cut(s) 138, 428
BssMI GATC 6 cut(s) 25, 32, 82, 184, 220, 254
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 140, 442
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 434
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 6 cut(s) 28, 35, 85, 187, 223, 257
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 6 cut(s) 25, 32, 82, 184, 220, 254
BstNI CCWGG 2 cut(s) 140, 442
BstSCI CCNGG 3 cut(s) 138, 320, 440
BstSFI CTRYAG 1 cut(s) 227
BstSLI GKGCMC 2 cut(s) 357, 393
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 2 cut(s) 391, 440
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 428
BtsCI GGATG 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 262
Cfr13I GGNCC 3 cut(s) 389, 390, 438
ClaI ATCGAT 1 cut(s) 24
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 1 cut(s) 429
CviJI RGCY 9 cut(s) 5, 100, 131, 264, 391, 409, 426, 433, 440
CviKI_1 RGCY 9 cut(s) 5, 100, 131, 264, 391, 409, 426, 433, 440
DdeI CTNAG 1 cut(s) 434
DpnI GATC 6 cut(s) 27, 34, 84, 186, 222, 256
DpnII GATC 6 cut(s) 25, 32, 82, 184, 220, 254
Ecl136II GAGCTC 2 cut(s) 100, 264
Eco130I CCWWGG 1 cut(s) 428
Eco24I GRGCYC 5 cut(s) 102, 266, 393, 411, 428
Eco31I GGTCTC 1 cut(s) 247
Eco53kI GAGCTC 2 cut(s) 100, 264
EcoICRI GAGCTC 2 cut(s) 100, 264
EcoO109I RGGNCCY 2 cut(s) 389, 438
EcoRII CCWGG 2 cut(s) 138, 440
EcoT14I CCWWGG 1 cut(s) 428
EcoT38I GRGCYC 5 cut(s) 102, 266, 393, 411, 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 1 cut(s) 432
FaiI YATR 3 cut(s) 111, 395, 430
FaqI GGGAC 1 cut(s) 337
FatI CATG 1 cut(s) 428
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 5 cut(s) 102, 266, 393, 411, 428
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 282
GluI GCNGC 1 cut(s) 170
HaeIII GGCC 2 cut(s) 391, 440
HapII CCGG 2 cut(s) 204, 321
Hin1II CATG 1 cut(s) 432
HpaII CCGG 2 cut(s) 204, 321
HphI GGTGA 5 cut(s) 20, 64, 76, 154, 218
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 125, 271
Hpy188III TCNNGA 5 cut(s) 73, 86, 154, 246, 316
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 271, 304
HpyAV CCTTC 2 cut(s) 43, 171
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 172, 292
HpyF3I CTNAG 1 cut(s) 434
Hsp92II CATG 1 cut(s) 432
Kzo9I GATC 6 cut(s) 25, 32, 82, 184, 220, 254
LmnI GCTCC 4 cut(s) 97, 105, 406, 423
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 2 cut(s) 27, 156
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 206, 316, 335
MalI GATC 6 cut(s) 27, 34, 84, 186, 222, 256
MboI GATC 6 cut(s) 25, 32, 82, 184, 220, 254
MboII GAAGA 2 cut(s) 244, 247
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 6 cut(s) 102, 266, 357, 393, 411, 428
MluCI AATT 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 48, 88, 267, 438
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 2 cut(s) 204, 321
MspR9I CCNGG 3 cut(s) 140, 322, 442
MvaI CCWGG 2 cut(s) 140, 442
NciI CCSGG 1 cut(s) 322
NcoI CCATGG 1 cut(s) 428
NdeII GATC 6 cut(s) 25, 32, 82, 184, 220, 254
NlaIII CATG 1 cut(s) 432
NlaIV GGNNCC 7 cut(s) 84, 354, 372, 390, 391, 408, 425
NmuCI GTSAC 3 cut(s) 206, 316, 335
PkrI GCNGC 1 cut(s) 171
Psp124BI GAGCTC 2 cut(s) 102, 266
Psp6I CCWGG 2 cut(s) 138, 440
PspGI CCWGG 2 cut(s) 138, 440
PspN4I GGNNCC 7 cut(s) 84, 354, 372, 390, 391, 408, 425
PspOMI GGGCCC 1 cut(s) 389
PspPI GGNCC 3 cut(s) 389, 390, 438
PsuI RGATCY 1 cut(s) 82
SacI GAGCTC 2 cut(s) 102, 266
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 6 cut(s) 25, 32, 82, 184, 220, 254
Sau96I GGNCC 3 cut(s) 389, 390, 438
ScrFI CCNGG 3 cut(s) 140, 322, 442
SduI GDGCHC 6 cut(s) 102, 266, 357, 393, 411, 428
SetI ASST 8 cut(s) 54, 102, 144, 200, 266, 278, 335, 449
SfaNI GCATC 2 cut(s) 27, 156
SfcI CTRYAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 400
SsiI CCGC 1 cut(s) 190
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 2 cut(s) 102, 266
StyD4I CCNGG 3 cut(s) 138, 320, 440
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 4 cut(s) 24, 43, 219, 253
TasI AATT 1 cut(s) 400
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 3 cut(s) 206, 316, 335
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 3 cut(s) 206, 316, 335
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 2 cut(s) 105, 354
TspRI CASTG 1 cut(s) 354
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.