Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011692

Physical Location & Seq

Genomic Coordinates Reverse (-)

6040919 .. 6043014

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCGGTTGTGGTTGAAGAAGGTGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGATTTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATGTTACCTTAAGGAGAAGGTTTTAAACAGCCGATTCACGGCTGTGGCCATGGGAGAAGCTGATCTCAACAAGTGTGAGCCTTGGGATTTGCCAAAGAGGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTTCTGTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAGGATACTGGAAAGCCACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGGATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGGGTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTCCCAAAATCTGCAAGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACCACAACCCAACCAATGACGAGAATACCCGTTGAAGATTTCACAAGGATGGATTCTCTAGAGAACATTGATCATCTCCTAGACTTCTCATCTCTTCCTCCTCTCATAGACCCGAGTTTCATGAGTCAAACCGAACAACCAAACTTCAAACCCATCAACCCTCCAACTTACGATATCTCATCACCAATCCAACCCCATCATTTCAATTCTTACCAATCAATCTTTAACCACCAGGTTTTTGGTTCTGCTTCGGGCTCTACGTACAACAACAACAACGAGATGATCAAGATGGAGCAATCACTTGTTAGTGTATCTCAAGAAACATGCCTAAGCTCAGATGTGAACGCGAACATGACTACAACCACGGAGGTATCTTCGGGTCCTGTAATGAAACAAGAAATGGGGATGATGGGAATGGTGAATGGTAGCAAGTCGTATGAAGATCTATGTGACTTGAGGGGGGACTTGTGGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0010271 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031329 GO:0031331 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1900055 GO:1900057 GO:1901401 GO:1901403 GO:1901404 GO:1901406 GO:1903506 GO:1903648 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

335

Amino Acids

38.27

Weight (kDa)

5.82

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	22 - 147	2.7e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04060 AT5G18270 AT5G18270
fragaria_vesca	FvH4_1g27900
malus_domestica	MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica	Prupe.7G001400_v2.0.a1
pyrus_communis	pycom12g00110 pycom49g00070
rosa_chinensis	RchiOBHm_Chr3g0497471
rosa_laevigata	RLG00000022457
rosa_multiflora	Rmu_sc0008086.1_g000018
rosa_roxburghii	Rroxscaffold_6G00387990
rosa_rugosa	Rorug03G0293100
rosa_samantha	Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana	Rw3G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccII	CGCG	1 cut(s)	875
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	2 cut(s)	145, 289
AflII	CTTAAG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	7 cut(s)	17, 34, 337, 443, 563, 676, 733
AjnI	CCWGG	2 cut(s)	67, 759
AleI	CACNNNNGTG	1 cut(s)	149
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	4 cut(s)	52, 167, 395, 861
AluI	AGCT	4 cut(s)	52, 167, 395, 861
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	640
AoxI	GGCC	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	908
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	4 cut(s)	56, 416, 702, 958
AvaI	CYCGRG	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	908
BaeI	ACNNNNGTAYC	2 cut(s)	882, 915
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	397, 785
Bbv12I	GWGCWC	1 cut(s)	397
BccI	CCATC	6 cut(s)	208, 571, 689, 732, 811, 931
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	2 cut(s)	69, 761
BciVI	GTATCC	2 cut(s)	270, 293
BclI	TGATCA	2 cut(s)	598, 810
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	2 cut(s)	587, 608
BfrI	CTTAAG	1 cut(s)	116
BfuI	GTATCC	2 cut(s)	270, 293
BglII	AGATCT	2 cut(s)	330, 970
Bme1390I	CCNGG	3 cut(s)	69, 316, 761
Bme18I	GGWCC	1 cut(s)	908
BmeT110I	CYCGRG	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	908
BmiI	GGNNCC	1 cut(s)	909
BmrFI	CCNGG	3 cut(s)	69, 316, 761
BmrI	ACTGGG	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	857
BpuEI	CTTGAG	2 cut(s)	828, 1003
BpuMI	CCSGG	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	156, 188, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 289
Bse1I	ACTGG	2 cut(s)	271, 308
BseBI	CCWGG	2 cut(s)	69, 761
BseDI	CCNNGG	3 cut(s)	156, 188, 891
BseGI	GGATG	5 cut(s)	82, 276, 366, 582, 939
BseLI	CCNNNNNNNGG	2 cut(s)	145, 289
BseMII	CTCAG	1 cut(s)	876
BseNI	ACTGG	2 cut(s)	271, 308
BseRI	GAGGAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	875
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	397
BsiHKCI	CYCGRG	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	3 cut(s)	263, 497, 1004
BslI	CCNNNNNNNGG	2 cut(s)	145, 289
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	3 cut(s)	263, 497, 1004
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	640
Bsp1286I	GDGCHC	2 cut(s)	397, 785
Bsp143I	GATC	6 cut(s)	99, 169, 330, 598, 810, 970
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	875
BspFNI	CGCG	1 cut(s)	875
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	1 cut(s)	909
BspQI	GCTCTTC	2 cut(s)	42, 385
BspTI	CTTAAG	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	271, 308
BssECI	CCNNGG	3 cut(s)	156, 188, 891
BssMI	GATC	6 cut(s)	99, 169, 330, 598, 810, 970
BssT1I	CCWWGG	2 cut(s)	156, 188
Bst2UI	CCWGG	2 cut(s)	69, 761
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	4 cut(s)	42, 90, 385, 627
BstAFI	CTTAAG	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	789
BstDEI	CTNAG	2 cut(s)	857, 862
BstDSI	CCRYGG	2 cut(s)	156, 891
BstF5I	GGATG	5 cut(s)	82, 276, 366, 582, 939
BstFNI	CGCG	1 cut(s)	875
BstKTI	GATC	6 cut(s)	102, 172, 333, 601, 813, 973
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	6 cut(s)	99, 169, 330, 598, 810, 970
BstNI	CCWGG	2 cut(s)	69, 761
BstNSI	RCATGY	2 cut(s)	111, 855
BstSCI	CCNGG	3 cut(s)	67, 314, 759
BstSNI	TACGTA	1 cut(s)	789
BstUI	CGCG	1 cut(s)	875
BstX2I	RGATCY	2 cut(s)	330, 970
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	2 cut(s)	330, 970
BsuI	GTATCC	2 cut(s)	270, 293
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	2 cut(s)	156, 891
BtsCI	GGATG	5 cut(s)	82, 276, 366, 582, 939
CciI	TCATGA	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	908
CsiI	ACCWGGT	2 cut(s)	67, 759
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	8 cut(s)	38, 108, 157, 424, 428, 649, 852, 880
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	2 cut(s)	857, 862
DpnI	GATC	6 cut(s)	101, 171, 332, 600, 812, 972
DpnII	GATC	6 cut(s)	99, 169, 330, 598, 810, 970
DraI	TTTAAA	1 cut(s)	132
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	4 cut(s)	42, 90, 385, 627
EarI	CTCTTC	4 cut(s)	42, 90, 385, 627
Ecl136II	GAGCTC	1 cut(s)	395
Eco105I	TACGTA	1 cut(s)	789
Eco130I	CCWWGG	2 cut(s)	156, 188
Eco24I	GRGCYC	2 cut(s)	397, 785
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	908
Eco53kI	GAGCTC	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	640
EcoICRI	GAGCTC	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRII	CCWGG	2 cut(s)	67, 759
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	156, 188
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	397, 785
ErhI	CCWWGG	2 cut(s)	156, 188
FaeI	CATG	8 cut(s)	41, 111, 160, 427, 431, 652, 855, 883
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	3 cut(s)	263, 497, 1004
FatI	CATG	8 cut(s)	37, 107, 156, 423, 427, 648, 851, 879
FbaI	TGATCA	2 cut(s)	598, 810
FokI	GGATG	5 cut(s)	69, 283, 373, 589, 946
FriOI	GRGCYC	2 cut(s)	397, 785
FspBI	CTAG	2 cut(s)	587, 608
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	8 cut(s)	41, 111, 160, 427, 431, 652, 855, 883
HinfI	GANTC	5 cut(s)	34, 141, 293, 581, 652
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	4 cut(s)	56, 416, 702, 958
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	2 cut(s)	264, 865
Hpy188III	TCNNGA	6 cut(s)	297, 440, 587, 649, 814, 845
Hpy8I	GTNNAC	1 cut(s)	871
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	5 cut(s)	14, 118, 313, 437, 534
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	788
HpyCH4V	TGCA	2 cut(s)	427, 479
HpyF3I	CTNAG	2 cut(s)	857, 862
HpySE526I	ACGT	1 cut(s)	788
Hsp92II	CATG	8 cut(s)	41, 111, 160, 427, 431, 652, 855, 883
Ksp22I	TGATCA	2 cut(s)	598, 810
Kzo9I	GATC	6 cut(s)	99, 169, 330, 598, 810, 970
LguI	GCTCTTC	2 cut(s)	42, 385
LmnI	GCTCC	2 cut(s)	400, 820
MabI	ACCWGGT	2 cut(s)	67, 759
MaeI	CTAG	2 cut(s)	587, 608
MaeII	ACGT	1 cut(s)	788
MaeIII	GTNAC	2 cut(s)	110, 977
MalI	GATC	6 cut(s)	101, 171, 332, 600, 812, 972
MboI	GATC	6 cut(s)	99, 169, 330, 598, 810, 970
MflI	RGATCY	2 cut(s)	330, 970
MhlI	GDGCHC	2 cut(s)	397, 785
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	415, 733
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	302, 661
MmeI	TCCRAC	4 cut(s)	110, 287, 716, 742
MnlI	CCTC	9 cut(s)	35, 198, 267, 380, 636, 639, 699, 889, 978
Mox20I	TGGCCA	1 cut(s)	155
Mph1103I	ATGCAT	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	3 cut(s)	117, 131, 753
MslI	CAYNNNNRTG	3 cut(s)	42, 149, 575
Msp20I	TGGCCA	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	3 cut(s)	69, 316, 761
MvaI	CCWGG	2 cut(s)	69, 761
MvnI	CGCG	1 cut(s)	875
NciI	CCSGG	1 cut(s)	316
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	6 cut(s)	99, 169, 330, 598, 810, 970
NlaIII	CATG	8 cut(s)	41, 111, 160, 427, 431, 652, 855, 883
NlaIV	GGNNCC	1 cut(s)	909
NmuCI	GTSAC	1 cut(s)	977
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	2 cut(s)	111, 855
OliI	CACNNNNGTG	1 cut(s)	149
PagI	TCATGA	1 cut(s)	648
PciI	ACATGT	1 cut(s)	107
PciSI	GCTCTTC	2 cut(s)	42, 385
PcsI	WCGNNNNNNNCGW	3 cut(s)	284, 492, 785
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	3 cut(s)	34, 141, 581
PflFI	GACNNNGTC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	301, 660
PpsI	GAGTC	2 cut(s)	301, 660
Ppu21I	YACGTR	1 cut(s)	789
PpuMI	RGGWCCY	1 cut(s)	908
PscI	ACATGT	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	2 cut(s)	67, 759
PspGI	CCWGG	2 cut(s)	67, 759
PspN4I	GGNNCC	1 cut(s)	909
PspPI	GGNCC	1 cut(s)	908
PspPPI	RGGWCCY	1 cut(s)	908
PsuI	RGATCY	2 cut(s)	330, 970
PsyI	GACNNNGTC	1 cut(s)	292
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
RseI	CAYNNNNRTG	3 cut(s)	42, 149, 575
SacI	GAGCTC	1 cut(s)	397
SapI	GCTCTTC	2 cut(s)	42, 385
SaqAI	TTAA	3 cut(s)	117, 131, 753
Sau3AI	GATC	6 cut(s)	99, 169, 330, 598, 810, 970
Sau96I	GGNCC	1 cut(s)	908
SchI	GAGTC	2 cut(s)	302, 661
ScrFI	CCNGG	3 cut(s)	69, 316, 761
SduI	GDGCHC	2 cut(s)	397, 785
SexAI	ACCWGGT	2 cut(s)	67, 759
SinI	GGWCC	1 cut(s)	908
SmiMI	CAYNNNNRTG	3 cut(s)	42, 149, 575
SmlI	CTYRAG	3 cut(s)	116, 843, 982
SmoI	CTYRAG	3 cut(s)	116, 843, 982
SnaBI	TACGTA	1 cut(s)	789
Sse9I	AATT	2 cut(s)	415, 733
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	452
SspMI	CTAG	2 cut(s)	587, 608
SstI	GAGCTC	1 cut(s)	397
StyD4I	CCNGG	3 cut(s)	67, 314, 759
StyI	CCWWGG	2 cut(s)	156, 188
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	791
TasI	AATT	2 cut(s)	415, 733
TfiI	GAWTC	3 cut(s)	34, 141, 581
Tru1I	TTAA	3 cut(s)	117, 131, 753
Tru9I	TTAA	3 cut(s)	117, 131, 753
TseFI	GTSAC	1 cut(s)	977
Tsp45I	GTSAC	1 cut(s)	977
TspDTI	ATGAA	6 cut(s)	71, 377, 444, 637, 932, 981
TspGWI	ACGGA	2 cut(s)	305, 908
Tth111I	GACNNNGTC	1 cut(s)	292
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	908
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	2 cut(s)	111, 855
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	2 cut(s)	587, 608
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.