FvH4_1g27900
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011692
Physical Location & Seq
Forward (+)
19525928 .. 19528140
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27900.t1

Sequence Viewer

Length: 1356 bp
ATGATGGAAGAAGAAGGTATGGTGGTGAATCAAGGCCATGATGAGCTGATGGCCTTGCCTCCCGGATTTCGTTTCCATCCCACCGACGAGGAAATCATAACTTGCTATCTAACGGAGAAGGCGGTCGACAGCAACTTCACCGCGACTGCGATCGGTGAAGCTGACCTGAACAAGTGTGAACCTTGGGATTTACCCAACAAGGCAAAGATGGGGGAGAGGGAATGGTACTTCTTCTGCCAGAGAGACAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCAACGGAATCTGGATACTGGAAAGCCACCGGAAAAGATAAAGAGATTTTCAAGCGCAAAACCCTTGTGGGGATGAAGAAGACTCTTGTGTTTTACACCGGCAGAGCTCCAAAGGGTGAGAAGACCAACTGGGTCATGCACGAATACAGACTCCATGGCAACCTCTCTAAGTCTACAAAGGATGAATGGGTTGTGTGCAGGGTTTTCCACAAGAACATGGGGCTTAAAAAGACAAGTAGTCCCTTATCTCCTACTGATCAAGGCGCCGGCGGCCAGCTGCTTAGGCTCAACTCTTTTGGGGATGATTTCTTGGATTCTTCTTCACTCCCACCTCTCATGGATCCTACTCCTTCCTATGACAAGTCTGCAGGCTCTTATAGCGGCTACTACGGAGAGCACAACGACCACGATACCAAAGGAAACATCACAGCAGCACCCTTATCAATACCAGCAGCCAATAAAAATACAACACCAGCAGATTTGCAATACTACTTTGAAGTTGGCTCTTCCACTCGCCAGATGAACAGGTTTCAGCTTCCCAACGCCGCCGGTAGCAACCAAATGAGTAACCCAATGGCAACCTCCACCATGTTATACCCTCAGATTCATCATCACCACCAGTTGATTCCAAACCCTTCCTTCTCTTTTCAGCCAAATAATAACCTTGATTATTACTTGCGACAAGAGATAAGGGGCCCCAGGACTTCAATCCCAAACAATCAAGGCTCCTCCTTTAACTTTCAAAGCAGCGCAATTGATCATCAGGTCACATTAAGAGCAATGGCTGCAGCTAAAAACAACCACCACCACATTGAAACTTCAGTAACAACAGCAGGCTCAGGAGGCTTAGATAGCAGACAGTGCAAGCTGGAGCAGTATTCATCCAACCAGTCTATGTTTAGCGTCTCGCAAGATACCGGATTGAGCACCGCTGATATGAATACCACCGAGATATCATCATCAGTTGTCACAAAGCAAGAAATCGAGGTTGGAAGCAGCAACACATTATATGACGATCATCTTGAAAGTCCATCTGTTGTCCCTATTTCGGACATTGAAGGCTTGTGGGACTATTGA

Protein Analysis

452

Amino Acids

50.45

Weight (kDa)

5.98

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 144 2.9e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04060 AT5G18270 AT5G18270
fragaria_vesca FvH4_1g27900
malus_domestica MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica Prupe.7G001400_v2.0.a1
pyrus_communis pycom12g00110 pycom49g00070
rosa_chinensis RchiOBHm_Chr3g0497471
rosa_laevigata RLG00000022457
rosa_multiflora Rmu_sc0008086.1_g000018
rosa_roxburghii Rroxscaffold_6G00387990
rosa_rugosa Rorug03G0293100
rosa_samantha Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana Rw3G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 542
AccI GTMKAC 2 cut(s) 126, 452
AccII CGCG 1 cut(s) 143
AciI CCGC 6 cut(s) 122, 141, 549, 660, 825, 1209
AclWI GGATC 2 cut(s) 614, 627
AcoI YGGCCR 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 1083
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 348, 1327
AgsI TTSAA 7 cut(s) 331, 776, 987, 1022, 1094, 1304, 1337
AhdI GACNNNNNGTC 1 cut(s) 516
AjnI CCWGG 1 cut(s) 977
AjuI GAANNNNNNNTTGG 2 cut(s) 1251, 1283
AluBI AGCT 7 cut(s) 46, 161, 386, 556, 814, 1070, 1147
AluI AGCT 7 cut(s) 46, 161, 386, 556, 814, 1070, 1147
Alw21I GWGCWC 3 cut(s) 388, 678, 1208
Alw26I GTCTC 2 cut(s) 237, 1189
AlwI GGATC 2 cut(s) 614, 627
AoxI GGCC 4 cut(s) 34, 51, 550, 973
ApaI GGGCCC 1 cut(s) 977
ApeKI GCWGC 7 cut(s) 556, 710, 731, 1026, 1064, 1067, 1275
AspLEI GCGC 3 cut(s) 336, 545, 1031
AspS9I GGNCC 2 cut(s) 973, 974
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 5 cut(s) 37, 130, 167, 407, 884
BaeGI GKGCMC 1 cut(s) 977
BamHI GGATCC 1 cut(s) 619
BanI GGYRCC 1 cut(s) 542
BanII GRGCYC 2 cut(s) 388, 977
BbsI GAAGAC 2 cut(s) 365, 407
Bbv12I GWGCWC 3 cut(s) 388, 678, 1208
BbvI GCAGC 7 cut(s) 543, 722, 743, 1038, 1051, 1079, 1287
BccI CCATC 4 cut(s) 43, 84, 202, 1318
BciT130I CCWGG 1 cut(s) 979
BciVI GTATCC 2 cut(s) 264, 287
BclI TGATCA 2 cut(s) 535, 1036
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 237, 1189
BfmI CTRYAG 3 cut(s) 258, 645, 1065
BfoI RGCGCY 1 cut(s) 546
BfuI GTATCC 2 cut(s) 264, 287
Bme1390I CCNGG 2 cut(s) 63, 979
BmeRI GACNNNNNGTC 1 cut(s) 516
BmgT120I GGNCC 2 cut(s) 973, 974
BmiI GGNNCC 6 cut(s) 544, 621, 974, 975, 976, 1006
BmrFI CCNGG 2 cut(s) 63, 979
BmrI ACTGGG 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 2 cut(s) 365, 407
BpmI CTGGAG 1 cut(s) 1169
Bpu10I CCTNAGC 2 cut(s) 560, 1117
BpuMI CCSGG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 182, 433, 977
BsaWI WCCGGW 2 cut(s) 308, 1196
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 1327
Bse118I RCCGGY 3 cut(s) 377, 545, 827
Bse1I ACTGG 4 cut(s) 302, 413, 898, 1168
Bse3DI GCAATG 1 cut(s) 1065
BseBI CCWGG 1 cut(s) 979
BseDI CCNNGG 3 cut(s) 182, 433, 977
BseGI GGATG 5 cut(s) 76, 357, 466, 586, 1160
BseLI CCNNNNNNNGG 2 cut(s) 348, 1327
BseMI GCAATG 1 cut(s) 1065
BseMII CTCAG 2 cut(s) 893, 1131
BseNI ACTGG 4 cut(s) 302, 413, 898, 1168
BseRI GAGGAG 1 cut(s) 997
BseSI GKGCMC 1 cut(s) 977
BseXI GCAGC 7 cut(s) 543, 722, 743, 1038, 1051, 1079, 1287
BsgI GTGCAG 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 2 cut(s) 126, 153
BshFI GGCC 4 cut(s) 36, 53, 552, 975
BshNI GGYRCC 1 cut(s) 542
BsiEI CGRYCG 2 cut(s) 126, 153
BsiHKAI GWGCWC 3 cut(s) 388, 678, 1208
BsiSI CCGG 6 cut(s) 63, 309, 378, 546, 828, 1197
BslFI GGGAC 2 cut(s) 504, 1304
BslI CCNNNNNNNGG 2 cut(s) 348, 1327
BsmAI GTCTC 2 cut(s) 237, 1189
BsmBI CGTCTC 1 cut(s) 1189
BsmFI GGGAC 2 cut(s) 504, 1304
BsnI GGCC 4 cut(s) 36, 53, 552, 975
Bsp120I GGGCCC 1 cut(s) 973
Bsp1286I GDGCHC 4 cut(s) 388, 678, 977, 1208
Bsp143I GATC 5 cut(s) 150, 535, 619, 1036, 1294
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 6 cut(s) 122, 141, 549, 660, 825, 1209
BspANI GGCC 4 cut(s) 36, 53, 552, 975
BspCNI CTCAG 2 cut(s) 892, 1130
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 6 cut(s) 544, 621, 974, 975, 976, 1006
BspMAI CTGCAG 2 cut(s) 649, 1069
BspPI GGATC 2 cut(s) 614, 627
BspQI GCTCTTC 1 cut(s) 790
BspT107I GGYRCC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 1065
BsrFI RCCGGY 3 cut(s) 377, 545, 827
BsrI ACTGG 4 cut(s) 302, 413, 898, 1168
BssAI RCCGGY 3 cut(s) 377, 545, 827
BssECI CCNNGG 3 cut(s) 182, 433, 977
BssMI GATC 5 cut(s) 150, 535, 619, 1036, 1294
BssNI GRCGYC 1 cut(s) 543
BssT1I CCWWGG 2 cut(s) 182, 433
Bst2UI CCWGG 1 cut(s) 979
Bst4CI ACNGT 1 cut(s) 1140
Bst6I CTCTTC 1 cut(s) 790
BstACI GRCGYC 1 cut(s) 543
BstAPI GCANNNNNTGC 2 cut(s) 1064, 1140
BstC8I GCNNGC 5 cut(s) 547, 554, 649, 1114, 1145
BstDEI CTNAG 5 cut(s) 447, 560, 879, 1117, 1126
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 5 cut(s) 76, 357, 466, 586, 1160
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 3 cut(s) 336, 545, 1031
BstKTI GATC 5 cut(s) 153, 538, 622, 1039, 1297
BstMAI GTCTC 2 cut(s) 237, 1189
BstMBI GATC 5 cut(s) 150, 535, 619, 1036, 1294
BstMCI CGRYCG 2 cut(s) 126, 153
BstMWI GCNNNNNNNGC 7 cut(s) 549, 562, 657, 1064, 1122, 1131, 1140
BstNI CCWGG 1 cut(s) 979
BstSCI CCNGG 2 cut(s) 61, 977
BstSFI CTRYAG 3 cut(s) 258, 645, 1065
BstSLI GKGCMC 1 cut(s) 977
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 7 cut(s) 543, 722, 743, 1038, 1051, 1079, 1287
BstV2I GAAGAC 2 cut(s) 365, 407
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BsuI GTATCC 2 cut(s) 264, 287
BsuRI GGCC 4 cut(s) 36, 53, 552, 975
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 5 cut(s) 76, 357, 466, 586, 1160
BtsIMutI CAGTG 1 cut(s) 1145
Cac8I GCNNGC 5 cut(s) 547, 554, 649, 1114, 1145
CfoI GCGC 3 cut(s) 336, 545, 1031
Cfr10I RCCGGY 3 cut(s) 377, 545, 827
Cfr13I GGNCC 2 cut(s) 973, 974
CseI GACGC 1 cut(s) 1171
Csp6I GTAC 1 cut(s) 226
CviAII CATG 7 cut(s) 38, 265, 415, 434, 496, 616, 868
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 5 cut(s) 447, 560, 879, 1117, 1126
DinI GGCGCC 1 cut(s) 544
DpnI GATC 5 cut(s) 152, 537, 621, 1038, 1296
DpnII GATC 5 cut(s) 150, 535, 619, 1036, 1294
DriI GACNNNNNGTC 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 790
Eam1105I GACNNNNNGTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 790
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 182, 433
Eco24I GRGCYC 2 cut(s) 388, 977
Eco32I GATATC 1 cut(s) 1233
Eco53kI GAGCTC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 1083
EcoICRI GAGCTC 1 cut(s) 386
EcoO109I RGGNCCY 2 cut(s) 973, 974
EcoRII CCWGG 1 cut(s) 977
EcoRV GATATC 1 cut(s) 1233
EcoT14I CCWWGG 2 cut(s) 182, 433
EcoT38I GRGCYC 2 cut(s) 388, 977
EgeI GGCGCC 1 cut(s) 544
EheI GGCGCC 1 cut(s) 544
ErhI CCWWGG 2 cut(s) 182, 433
Esp3I CGTCTC 1 cut(s) 1189
FaeI CATG 7 cut(s) 41, 268, 418, 437, 499, 619, 871
FaqI GGGAC 2 cut(s) 504, 1304
FatI CATG 7 cut(s) 37, 264, 414, 433, 495, 615, 867
FbaI TGATCA 2 cut(s) 535, 1036
FblI GTMKAC 2 cut(s) 126, 452
FokI GGATG 5 cut(s) 63, 364, 473, 593, 1147
FriOI GRGCYC 2 cut(s) 388, 977
GlaI GCGC 3 cut(s) 335, 544, 1030
GsuI CTGGAG 1 cut(s) 1169
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 4 cut(s) 36, 53, 552, 975
HapII CCGG 6 cut(s) 63, 309, 378, 546, 828, 1197
HgaI GACGC 1 cut(s) 1171
HhaI GCGC 3 cut(s) 336, 545, 1031
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 7 cut(s) 41, 268, 418, 437, 499, 619, 871
Hin6I GCGC 3 cut(s) 334, 543, 1029
HinP1I GCGC 3 cut(s) 334, 543, 1029
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 8 cut(s) 28, 274, 287, 361, 429, 593, 883, 904
HpaII CCGG 6 cut(s) 63, 309, 378, 546, 828, 1197
HphI GGTGA 5 cut(s) 37, 130, 167, 407, 884
Hpy166II GTNNAC 3 cut(s) 127, 179, 453
Hpy188I TCNGA 2 cut(s) 882, 1330
Hpy188III TCNNGA 3 cut(s) 291, 1119, 1301
Hpy8I GTNNAC 3 cut(s) 127, 179, 453
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 6 cut(s) 8, 112, 639, 924, 928, 1331
HpyCH4III ACNGT 1 cut(s) 1140
HpyCH4V TGCA 6 cut(s) 418, 477, 647, 763, 1067, 1143
HpyF10VI GCNNNNNNNGC 7 cut(s) 549, 562, 657, 1064, 1122, 1131, 1140
HpyF3I CTNAG 5 cut(s) 447, 560, 879, 1117, 1126
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 7 cut(s) 41, 268, 418, 437, 499, 619, 871
HspAI GCGC 3 cut(s) 334, 543, 1029
KasI GGCGCC 1 cut(s) 542
KroI GCCGGC 1 cut(s) 545
KroNI GCCGGC 1 cut(s) 547
Ksp22I TGATCA 2 cut(s) 535, 1036
Kzo9I GATC 5 cut(s) 150, 535, 619, 1036, 1294
LguI GCTCTTC 1 cut(s) 790
LmnI GCTCC 3 cut(s) 391, 1010, 1150
Lsp1109I GCAGC 7 cut(s) 543, 722, 743, 1038, 1051, 1079, 1287
MaeIII GTNAC 4 cut(s) 845, 1045, 1102, 1246
MalI GATC 5 cut(s) 152, 537, 621, 1038, 1296
MboI GATC 5 cut(s) 150, 535, 619, 1036, 1294
MboII GAAGA 9 cut(s) 20, 23, 223, 367, 370, 412, 588, 591, 777
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 4 cut(s) 388, 678, 977, 1208
MluCI AATT 1 cut(s) 1032
Mly113I GGCGCC 1 cut(s) 543
MlyI GAGTC 2 cut(s) 355, 423
MmeI TCCRAC 2 cut(s) 1188, 1249
MreI CGCCGGCG 1 cut(s) 545
MroNI GCCGGC 1 cut(s) 545
MseI TTAA 3 cut(s) 504, 1014, 1052
MspA1I CMGCKG 2 cut(s) 556, 1211
MspI CCGG 6 cut(s) 63, 309, 378, 546, 828, 1197
MspR9I CCNGG 2 cut(s) 63, 979
MunI CAATTG 1 cut(s) 1032
MvaI CCWGG 1 cut(s) 979
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 7 cut(s) 549, 562, 657, 1064, 1122, 1131, 1140
NaeI GCCGGC 1 cut(s) 547
NarI GGCGCC 1 cut(s) 543
NciI CCSGG 1 cut(s) 63
NcoI CCATGG 1 cut(s) 433
NdeII GATC 5 cut(s) 150, 535, 619, 1036, 1294
NgoMIV GCCGGC 1 cut(s) 545
NlaIII CATG 7 cut(s) 41, 268, 418, 437, 499, 619, 871
NlaIV GGNNCC 6 cut(s) 544, 621, 974, 975, 976, 1006
NmuCI GTSAC 2 cut(s) 1045, 1246
PciSI GCTCTTC 1 cut(s) 790
PdiI GCCGGC 1 cut(s) 547
PfeI GAWTC 6 cut(s) 28, 274, 287, 593, 883, 904
PfoI TCCNGGA 1 cut(s) 61
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 2 cut(s) 355, 423
PluTI GGCGCC 1 cut(s) 546
PpsI GAGTC 2 cut(s) 355, 423
Psp124BI GAGCTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 977
PspGI CCWGG 1 cut(s) 977
PspN4I GGNNCC 6 cut(s) 544, 621, 974, 975, 976, 1006
PspOMI GGGCCC 1 cut(s) 973
PspPI GGNCC 2 cut(s) 973, 974
PstI CTGCAG 2 cut(s) 649, 1069
PsuI RGATCY 1 cut(s) 619
PvuI CGATCG 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 556
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SacI GAGCTC 1 cut(s) 388
SalI GTCGAC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 790
SaqAI TTAA 3 cut(s) 504, 1014, 1052
Sau3AI GATC 5 cut(s) 150, 535, 619, 1036, 1294
Sau96I GGNCC 2 cut(s) 973, 974
SchI GAGTC 2 cut(s) 355, 423
ScrFI CCNGG 2 cut(s) 63, 979
SduI GDGCHC 4 cut(s) 388, 678, 977, 1208
SfcI CTRYAG 3 cut(s) 258, 645, 1065
SfoI GGCGCC 1 cut(s) 544
SgrAI CRCCGGYG 1 cut(s) 545
Sse9I AATT 1 cut(s) 1032
SsiI CCGC 6 cut(s) 122, 141, 549, 660, 825, 1209
SspDI GGCGCC 1 cut(s) 542
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 61, 977
StyI CCWWGG 2 cut(s) 182, 433
TaaI ACNGT 1 cut(s) 1140
TaqI TCGA 3 cut(s) 126, 277, 1263
TasI AATT 1 cut(s) 1032
TauI GCSGC 3 cut(s) 552, 663, 827
TfiI GAWTC 6 cut(s) 28, 274, 287, 593, 883, 904
Tru1I TTAA 3 cut(s) 504, 1014, 1052
Tru9I TTAA 3 cut(s) 504, 1014, 1052
TscAI CASTG 1 cut(s) 1145
TseFI GTSAC 2 cut(s) 1045, 1246
TseI GCWGC 7 cut(s) 556, 710, 731, 1026, 1064, 1067, 1275
Tsp45I GTSAC 2 cut(s) 1045, 1246
TspDTI ATGAA 6 cut(s) 368, 477, 815, 875, 1149, 1232
TspGWI ACGGA 3 cut(s) 128, 299, 684
TspRI CASTG 1 cut(s) 1145
XmiI GTMKAC 2 cut(s) 126, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.