Rh3AG336800
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011692
Physical Location & Seq
Reverse (-)
49112288 .. 49114810
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG336800.1

Sequence Viewer

Length: 1224 bp
ATGGCAGACAAGGCAAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCAGAGAGACAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCAACGCAATCTGGATACTGGAAAGCCACCGGAAAAGATAAAGAGATCTACAAGCGCAAAACCAACAACAGTAACTGCCTTGTCGGGATGAAGAAGACTCTTGTGTTTTACACCGGAAGAGCTCCAAAGGGTGAGAAGACCAACTGGGTCATGCACGAATACAGACTCGACGGCAAATTCACACATTACAATCTTTCTAAGCCTGCAAAGGATGAATGGGTTGTGTGCAGGGTTTTCCACAAGAACATGGGGCTTAAAAGAACTAGTAGTCCATTATCTCCGACTGATCAAAGCGCTGGTGGCCAGCTGCTAAGGCTCAACTCTTTTGGGGATGATTTCTTGGATTCTTCTTCTTCACTCCCACCTCTCATGGATCCTACTCCTTCCTACGACAGGCCTGCAGGCTCCTATGGCGGCTACCGCTTCGACTATGGAGAGCACGACGACAACGATTCCAAAGGAAAAATCACAGCAGCACCATTATCAGTACCATCAGCTAATAAAACAACACCAGCAGATATGCAATACTACTTTCAGCAAGTTGGCTCTTCCACTCGTCAGATCAACTGCTTTCAGCATCCCAACGCTGCTGCTGCTGCCGCTAGCTACCAAATGAGTAACCCAATGGCAACCCCCACCATGTTATACCCTCAGATTCATCATAATCACCAGTTGATTCCAAACCCTTCCTTCTCTTTTCAGCCAAATAATAATCCTGATTATTACTTCCAACAAGAGATAAGGGGCCCGAGGACTTCATTCCCAAACAATCAAGGCTCCTCCTTCGACTTTCAAAGCAGCAAACTTGATCATCAGGCCATTTTAAGAGCAATGGCTGCAGCTAAAAACAGGAACCACCAGATTGAAACATCAGTAACAACAGCAGGCTCAGGAGGCTTAGATAGTAGACAGTGCAAGGTGGAGCAGTATTCATCCAACAACCAGTCTATGTTTAGCGTCTCGCAAGATACTGGATTGAGCACCGCTGACATGAACACCACCACCGAGATATCATCATCAGTTGTCTCAAAGCAAGAAATCGAGGTCGGAAGCAGCAACACATTATATGAAGATCATCTTCAAAGTCCATCCGTTGTCCCTATTTCGGACATTGAAGGCTTGTGGGACTATTGA

Protein Analysis

407

Amino Acids

45.6

Weight (kDa)

8.39

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 3 - 86 5.6e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04060 AT5G18270 AT5G18270
fragaria_vesca FvH4_1g27900
malus_domestica MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica Prupe.7G001400_v2.0.a1
pyrus_communis pycom12g00110 pycom49g00070
rosa_chinensis RchiOBHm_Chr3g0497471
rosa_laevigata RLG00000022457
rosa_multiflora Rmu_sc0008086.1_g000018
rosa_roxburghii Rroxscaffold_6G00387990
rosa_rugosa Rorug03G0293100
rosa_samantha Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana Rw3G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 997
AciI CCGC 4 cut(s) 504, 511, 690, 1074
AclWI GGATC 2 cut(s) 458, 471
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 2 cut(s) 38, 579
AfeI AGCGCT 1 cut(s) 385
AfiI CCNNNNNNNGG 2 cut(s) 483, 1195
AgsI TTSAA 4 cut(s) 884, 956, 1172, 1205
AhlI ACTAGT 1 cut(s) 353
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 5 cut(s) 212, 397, 587, 696, 932
AluI AGCT 5 cut(s) 212, 397, 587, 696, 932
Alw21I GWGCWC 3 cut(s) 214, 531, 1073
Alw26I GTCTC 3 cut(s) 48, 1054, 1120
AlwI GGATC 2 cut(s) 458, 471
AlwNI CAGNNNCTG 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 838
Aor51HI AGCGCT 1 cut(s) 385
AoxI GGCC 4 cut(s) 391, 485, 835, 906
ApaI GGGCCC 1 cut(s) 839
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 2 cut(s) 147, 386
AspS9I GGNCC 2 cut(s) 835, 836
AsuHPI GGTGA 2 cut(s) 233, 749
AsuNHI GCTAGC 1 cut(s) 692
AvaI CYCGRG 1 cut(s) 838
BaeGI GKGCMC 1 cut(s) 839
BalI TGGCCA 1 cut(s) 393
BamHI GGATCC 1 cut(s) 463
BanII GRGCYC 2 cut(s) 214, 839
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BbsI GAAGAC 2 cut(s) 191, 233
Bbv12I GWGCWC 3 cut(s) 214, 531, 1073
BccI CCATC 3 cut(s) 13, 589, 1186
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BciVI GTATCC 2 cut(s) 75, 98
BclI TGATCA 2 cut(s) 376, 898
BcoDI GTCTC 3 cut(s) 48, 1054, 1120
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 2 cut(s) 354, 693
BfmI CTRYAG 3 cut(s) 69, 489, 927
BfoI RGCGCY 1 cut(s) 387
BfuI GTATCC 2 cut(s) 75, 98
BglII AGATCT 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 838
BmgT120I GGNCC 2 cut(s) 835, 836
BmiI GGNNCC 6 cut(s) 465, 496, 836, 837, 868, 944
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 676
BmtI GCTAGC 1 cut(s) 696
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 2 cut(s) 191, 233
Bpu10I CCTNAGC 2 cut(s) 401, 979
BsaJI CCNNGG 1 cut(s) 839
BsaWI WCCGGW 2 cut(s) 119, 203
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 1195
Bse1I ACTGG 5 cut(s) 113, 239, 760, 1033, 1066
Bse3DI GCAATG 1 cut(s) 927
BseDI CCNNGG 1 cut(s) 839
BseGI GGATG 6 cut(s) 183, 307, 427, 667, 1022, 1178
BseLI CCNNNNNNNGG 2 cut(s) 483, 1195
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 2 cut(s) 755, 993
BseNI ACTGG 5 cut(s) 113, 239, 760, 1033, 1066
BseRI GAGGAG 1 cut(s) 859
BseSI GKGCMC 1 cut(s) 839
BsgI GTGCAG 1 cut(s) 337
BshFI GGCC 4 cut(s) 393, 487, 837, 908
BsiHKAI GWGCWC 3 cut(s) 214, 531, 1073
BsiHKCI CYCGRG 1 cut(s) 838
BsiSI CCGG 2 cut(s) 120, 204
BslFI GGGAC 1 cut(s) 1172
BslI CCNNNNNNNGG 2 cut(s) 483, 1195
BsmAI GTCTC 3 cut(s) 48, 1054, 1120
BsmBI CGTCTC 1 cut(s) 1054
BsmFI GGGAC 1 cut(s) 1172
BsnI GGCC 4 cut(s) 393, 487, 837, 908
BsoBI CYCGRG 1 cut(s) 838
Bsp120I GGGCCC 1 cut(s) 835
Bsp1286I GDGCHC 4 cut(s) 214, 531, 839, 1073
Bsp143I GATC 6 cut(s) 135, 376, 463, 651, 898, 1162
BspACI CCGC 4 cut(s) 504, 511, 690, 1074
BspANI GGCC 4 cut(s) 393, 487, 837, 908
BspCNI CTCAG 2 cut(s) 754, 992
BspLI GGNNCC 6 cut(s) 465, 496, 836, 837, 868, 944
BspMAI CTGCAG 2 cut(s) 493, 931
BspOI GCTAGC 1 cut(s) 696
BspPI GGATC 2 cut(s) 458, 471
BspQI GCTCTTC 2 cut(s) 202, 643
BsrDI GCAATG 1 cut(s) 927
BsrI ACTGG 5 cut(s) 113, 239, 760, 1033, 1066
BssECI CCNNGG 1 cut(s) 839
BssMI GATC 6 cut(s) 135, 376, 463, 651, 898, 1162
Bst4CI ACNGT 2 cut(s) 161, 1002
Bst6I CTCTTC 2 cut(s) 202, 643
BstAPI GCANNNNNTGC 1 cut(s) 926
BstC8I GCNNGC 6 cut(s) 294, 395, 489, 493, 694, 976
BstDEI CTNAG 5 cut(s) 288, 401, 741, 979, 988
BstENI CCTNNNNNAGG 1 cut(s) 481
BstF5I GGATG 6 cut(s) 183, 307, 427, 667, 1022, 1178
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 2 cut(s) 147, 386
BstKTI GATC 6 cut(s) 138, 379, 466, 654, 901, 1165
BstMAI GTCTC 3 cut(s) 48, 1054, 1120
BstMBI GATC 6 cut(s) 135, 376, 463, 651, 898, 1162
BstSFI CTRYAG 3 cut(s) 69, 489, 927
BstSLI GKGCMC 1 cut(s) 839
BstV2I GAAGAC 2 cut(s) 191, 233
BstX2I RGATCY 2 cut(s) 135, 463
BstYI RGATCY 2 cut(s) 135, 463
BsuI GTATCC 2 cut(s) 75, 98
BsuRI GGCC 4 cut(s) 393, 487, 837, 908
BtsCI GGATG 6 cut(s) 183, 307, 427, 667, 1022, 1178
BtsIMutI CAGTG 1 cut(s) 1007
Cac8I GCNNGC 6 cut(s) 294, 395, 489, 493, 694, 976
CaiI CAGNNNCTG 1 cut(s) 165
CfoI GCGC 2 cut(s) 147, 386
Cfr13I GGNCC 2 cut(s) 835, 836
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 2 cut(s) 37, 578
CviAII CATG 6 cut(s) 76, 241, 337, 460, 730, 1081
CviQI GTAC 2 cut(s) 37, 578
DdeI CTNAG 5 cut(s) 288, 401, 741, 979, 988
DpnI GATC 6 cut(s) 137, 378, 465, 653, 900, 1164
DpnII GATC 6 cut(s) 135, 376, 463, 651, 898, 1162
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 202, 643
EarI CTCTTC 2 cut(s) 202, 643
Ecl136II GAGCTC 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 487
Eco24I GRGCYC 2 cut(s) 214, 839
Eco32I GATATC 1 cut(s) 1101
Eco47III AGCGCT 1 cut(s) 385
Eco53kI GAGCTC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 835
EcoRV GATATC 1 cut(s) 1101
EcoT38I GRGCYC 2 cut(s) 214, 839
Esp3I CGTCTC 1 cut(s) 1054
FaeI CATG 6 cut(s) 79, 244, 340, 463, 733, 1084
FalI AAGNNNNNCTT 2 cut(s) 1152, 1184
FaqI GGGAC 1 cut(s) 1172
FatI CATG 6 cut(s) 75, 240, 336, 459, 729, 1080
FbaI TGATCA 2 cut(s) 376, 898
FblI GTMKAC 1 cut(s) 997
FokI GGATG 6 cut(s) 190, 314, 434, 654, 1009, 1165
FriOI GRGCYC 2 cut(s) 214, 839
FspBI CTAG 2 cut(s) 354, 693
GlaI GCGC 2 cut(s) 146, 385
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 4 cut(s) 393, 487, 837, 908
HapII CCGG 2 cut(s) 120, 204
HgaI GACGC 1 cut(s) 1036
HhaI GCGC 2 cut(s) 147, 386
Hin1II CATG 6 cut(s) 79, 244, 340, 463, 733, 1084
Hin6I GCGC 2 cut(s) 145, 384
HinP1I GCGC 2 cut(s) 145, 384
HinfI GANTC 7 cut(s) 85, 187, 255, 434, 542, 745, 766
HpaII CCGG 2 cut(s) 120, 204
HphI GGTGA 2 cut(s) 233, 749
Hpy166II GTNNAC 1 cut(s) 998
Hpy188I TCNGA 5 cut(s) 372, 651, 744, 1139, 1198
Hpy188III TCNNGA 4 cut(s) 102, 175, 806, 981
Hpy8I GTNNAC 1 cut(s) 998
Hpy99I CGWCG 2 cut(s) 263, 536
HpyAV CCTTC 6 cut(s) 22, 483, 786, 790, 883, 1199
HpyCH4III ACNGT 2 cut(s) 161, 1002
HpyCH4V TGCA 7 cut(s) 244, 296, 318, 491, 613, 929, 1005
HpyF3I CTNAG 5 cut(s) 288, 401, 741, 979, 988
Hsp92II CATG 6 cut(s) 79, 244, 340, 463, 733, 1084
HspAI GCGC 2 cut(s) 145, 384
Ksp22I TGATCA 2 cut(s) 376, 898
Kzo9I GATC 6 cut(s) 135, 376, 463, 651, 898, 1162
LguI GCTCTTC 2 cut(s) 202, 643
LmnI GCTCC 4 cut(s) 217, 500, 872, 1012
LweI GCATC 1 cut(s) 676
MaeI CTAG 2 cut(s) 354, 693
MaeIII GTNAC 3 cut(s) 161, 707, 964
MalI GATC 6 cut(s) 137, 378, 465, 653, 900, 1164
MboI GATC 6 cut(s) 135, 376, 463, 651, 898, 1162
MflI RGATCY 2 cut(s) 135, 463
MhlI GDGCHC 4 cut(s) 214, 531, 839, 1073
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 2 cut(s) 181, 249
MmeI TCCRAC 4 cut(s) 395, 844, 1050, 1117
MnlI CCTC 6 cut(s) 465, 750, 834, 880, 977, 1126
Mox20I TGGCCA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 393
MseI TTAA 2 cut(s) 345, 914
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 2 cut(s) 397, 1076
MspI CCGG 2 cut(s) 120, 204
NdeII GATC 6 cut(s) 135, 376, 463, 651, 898, 1162
NheI GCTAGC 1 cut(s) 692
NlaIII CATG 6 cut(s) 79, 244, 340, 463, 733, 1084
NlaIV GGNNCC 6 cut(s) 465, 496, 836, 837, 868, 944
PceI AGGCCT 1 cut(s) 487
PciSI GCTCTTC 2 cut(s) 202, 643
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PfeI GAWTC 5 cut(s) 85, 434, 542, 745, 766
PleI GAGTC 2 cut(s) 181, 249
PpsI GAGTC 2 cut(s) 181, 249
Psp124BI GAGCTC 1 cut(s) 214
PspN4I GGNNCC 6 cut(s) 465, 496, 836, 837, 868, 944
PspOMI GGGCCC 1 cut(s) 835
PspPI GGNCC 2 cut(s) 835, 836
PstI CTGCAG 2 cut(s) 493, 931
PstNI CAGNNNCTG 1 cut(s) 165
PsuI RGATCY 2 cut(s) 135, 463
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 2 cut(s) 38, 579
RsaNI GTAC 2 cut(s) 37, 578
SacI GAGCTC 1 cut(s) 214
SapI GCTCTTC 2 cut(s) 202, 643
SaqAI TTAA 2 cut(s) 345, 914
Sau3AI GATC 6 cut(s) 135, 376, 463, 651, 898, 1162
Sau96I GGNCC 2 cut(s) 835, 836
SbfI CCTGCAGG 1 cut(s) 493
SchI GAGTC 2 cut(s) 181, 249
SdaI CCTGCAGG 1 cut(s) 493
SduI GDGCHC 4 cut(s) 214, 531, 839, 1073
SetI ASST 8 cut(s) 214, 399, 457, 589, 698, 934, 1011, 1137
SfaNI GCATC 1 cut(s) 676
SfcI CTRYAG 3 cut(s) 69, 489, 927
SpeI ACTAGT 1 cut(s) 353
Sse8387I CCTGCAGG 1 cut(s) 493
Sse9I AATT 1 cut(s) 266
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 4 cut(s) 504, 511, 690, 1074
SspMI CTAG 2 cut(s) 354, 693
SstI GAGCTC 1 cut(s) 214
StuI AGGCCT 1 cut(s) 487
TaaI ACNGT 2 cut(s) 161, 1002
TaqI TCGA 5 cut(s) 88, 258, 516, 876, 1131
TasI AATT 1 cut(s) 266
TauI GCSGC 2 cut(s) 507, 692
TfiI GAWTC 5 cut(s) 85, 434, 542, 745, 766
Tru1I TTAA 2 cut(s) 345, 914
Tru9I TTAA 2 cut(s) 345, 914
TscAI CASTG 1 cut(s) 1007
TspDTI ATGAA 7 cut(s) 194, 318, 737, 837, 1011, 1097, 1173
TspGWI ACGGA 1 cut(s) 1171
TspRI CASTG 1 cut(s) 1007
XagI CCTNNNNNAGG 1 cut(s) 481
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 997
XspI CTAG 2 cut(s) 354, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.