Rw3G029600
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011692
Physical Location & Seq
Reverse (-)
45990811 .. 45992943
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029600.1

Sequence Viewer

Length: 1419 bp
ATGATGGAAGAAGAAGCTGTCGTCGTCGTGGTGAACCAAGCAGGAGGAGGAGGAGATGATGAGCTGATGGCCTTGCCTCCGGGATTTCGTTTCCATCCCACCGACGAGGAAATCATAACTTGCTATCTCACGGAGAAGGTGGTCAACAGCAACTTCACCGCAACTGCAATCGGTGAAGCTGATTTGAACAAGTGTGAACCGTGGGATTTGCCCAACAAGGCAAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACTAATCGAGCAACGCAATCTGGATACTGGAAAGCCACCGGAAAAGATAAAGAGATCTACAAGCGCAAAACCAACAACAGTAACTGCCTTGTCGGGATGAAGAAGACTCTTGTGTTTTACACCGGAAGAGCTCCAAAGGGTGAGAAGACCAACTGGGTCATGCACGAATACAGACTCGACGGCAAATTCACACATTACAATCTTTCTAAGCCTGCAAAGGATGAATGGGTTGTGTGCAGGGTTTTCCACAAGAACATGGGGCTTAAAAGGACTAGCAGTCCATTATCTCCGACTGATCAAGGCGCTGGTGGCCAGCTGCTAAGGCTCAACTCTTTTGGGGATGATTTCTTGGATTCTTCTTCTTCACTCCCACCTCTCATGGATCCTACTCCTTCCTACGACAGGCCTGCAGGCTCCTATGGCGGCTACCGCTTCGACCATGGAGAGCACGACGACAACGATTCCAAAGGAAAAATCACAGCAGCACCATTATCAGTACCATCAGCCAATAAAACAACGCCAGCAGATATGCAATACTACTTTCAGCAAGTTGGCTCTTCCACTCGTCAGATCAACTGCTTTCAGCATCCCAACGCTGCTGCTGCTGCCGCTAGCTACCCAATGGCAACCCCCACCATGTTATACCCTCAGATTCATCATAATCACCAGTTGATTCCAAACCCTTCCTTCTCTTTTCAGCCAAATAATAATCCTGATTATTACTTCCAACAAGAGATAAGGGGCCCGAGGACTTCATTCCCAAACAATCAAGGCTCCTCCTTCGACTTTCAAAGCAGCAAACTTGATCATCAGGCCATTTTAAGAGCAATGGCTGCAGCTAAAAACAGGAACCACCAGATTGAAACATCAGTAACAACAGCAGGCTCAGGAGGCTTAGATAGTAGACAGTGCAAGGTGGAGCAGTATTCATCCAACAACCAGTCTATGTTTAGCGTCTCGCAAGACACTGGATTGAGCACCGCTGACATGAACACCACCACCGAGATATCATCATCAGTTGTCTCAAAGCAAGAAATCGAGGTCGGAAGCAGCAACACATTATATGAAGATCATCTTCAAAGTCCATCCGTTGTCCCTATTTCGGACATTGAAGGCTTGTGGGACTATTGA

Protein Analysis

472

Amino Acids

52.59

Weight (kDa)

6.02

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 26 - 155 2e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04060 AT5G18270 AT5G18270
fragaria_vesca FvH4_1g27900
malus_domestica MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica Prupe.7G001400_v2.0.a1
pyrus_communis pycom12g00110 pycom49g00070
rosa_chinensis RchiOBHm_Chr3g0497471
rosa_laevigata RLG00000022457
rosa_multiflora Rmu_sc0008086.1_g000018
rosa_roxburghii Rroxscaffold_6G00387990
rosa_rugosa Rorug03G0293100
rosa_samantha Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana Rw3G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1192
AciI CCGC 5 cut(s) 159, 711, 718, 897, 1269
AclWI GGATC 2 cut(s) 665, 678
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 1 cut(s) 473
AfaI GTAC 2 cut(s) 245, 786
AfiI CCNNNNNNNGG 2 cut(s) 690, 1390
AgsI TTSAA 5 cut(s) 187, 1079, 1151, 1367, 1400
AhdI GACNNNNNGTC 1 cut(s) 564
AluBI AGCT 7 cut(s) 17, 64, 179, 419, 604, 903, 1127
AluI AGCT 7 cut(s) 17, 64, 179, 419, 604, 903, 1127
Alw21I GWGCWC 3 cut(s) 421, 738, 1268
Alw26I GTCTC 2 cut(s) 1249, 1315
AlwI GGATC 2 cut(s) 665, 678
AlwNI CAGNNNCTG 1 cut(s) 372
Ama87I CYCGRG 1 cut(s) 1033
AoxI GGCC 5 cut(s) 69, 598, 692, 1030, 1101
ApaI GGGCCC 1 cut(s) 1034
ApoI RAATTY 1 cut(s) 473
AspLEI GCGC 2 cut(s) 354, 593
AspS9I GGNCC 2 cut(s) 1030, 1031
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 5 cut(s) 43, 148, 185, 440, 944
AsuNHI GCTAGC 1 cut(s) 899
AvaI CYCGRG 1 cut(s) 1033
BaeGI GKGCMC 1 cut(s) 1034
BalI TGGCCA 1 cut(s) 600
BamHI GGATCC 1 cut(s) 670
BanII GRGCYC 2 cut(s) 421, 1034
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BbsI GAAGAC 2 cut(s) 398, 440
Bbv12I GWGCWC 3 cut(s) 421, 738, 1268
BccI CCATC 5 cut(s) 61, 102, 220, 796, 1381
BceAI ACGGC 1 cut(s) 484
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciVI GTATCC 2 cut(s) 282, 305
BclI TGATCA 2 cut(s) 583, 1093
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 1249, 1315
BfaI CTAG 2 cut(s) 561, 900
BfmI CTRYAG 3 cut(s) 276, 696, 1122
BfoI RGCGCY 1 cut(s) 594
BfuI GTATCC 2 cut(s) 282, 305
BglII AGATCT 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 81
BmeRI GACNNNNNGTC 1 cut(s) 564
BmeT110I CYCGRG 1 cut(s) 1033
BmgT120I GGNCC 2 cut(s) 1030, 1031
BmiI GGNNCC 6 cut(s) 672, 703, 1031, 1032, 1063, 1139
BmrFI CCNGG 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 883
BmtI GCTAGC 1 cut(s) 903
BmuI ACTGGG 1 cut(s) 451
BpiI GAAGAC 2 cut(s) 398, 440
Bpu10I CCTNAGC 2 cut(s) 608, 1174
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 200, 727, 1034
BsaWI WCCGGW 2 cut(s) 326, 410
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 690, 1390
Bse1I ACTGG 5 cut(s) 320, 446, 955, 1228, 1261
Bse3DI GCAATG 1 cut(s) 1122
BseDI CCNNGG 3 cut(s) 200, 727, 1034
BseGI GGATG 7 cut(s) 94, 390, 514, 634, 874, 1217, 1373
BseLI CCNNNNNNNGG 2 cut(s) 690, 1390
BseMI GCAATG 1 cut(s) 1122
BseMII CTCAG 2 cut(s) 950, 1188
BseNI ACTGG 5 cut(s) 320, 446, 955, 1228, 1261
BseRI GAGGAG 4 cut(s) 60, 63, 66, 1054
BseSI GKGCMC 1 cut(s) 1034
BsgI GTGCAG 1 cut(s) 544
BshFI GGCC 5 cut(s) 71, 600, 694, 1032, 1103
BsiHKAI GWGCWC 3 cut(s) 421, 738, 1268
BsiHKCI CYCGRG 1 cut(s) 1033
BsiSI CCGG 3 cut(s) 80, 327, 411
BslFI GGGAC 1 cut(s) 1367
BslI CCNNNNNNNGG 2 cut(s) 690, 1390
BsmAI GTCTC 2 cut(s) 1249, 1315
BsmBI CGTCTC 1 cut(s) 1249
BsmFI GGGAC 1 cut(s) 1367
BsnI GGCC 5 cut(s) 71, 600, 694, 1032, 1103
BsoBI CYCGRG 1 cut(s) 1033
Bsp120I GGGCCC 1 cut(s) 1030
Bsp1286I GDGCHC 4 cut(s) 421, 738, 1034, 1268
Bsp143I GATC 6 cut(s) 342, 583, 670, 858, 1093, 1357
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 5 cut(s) 159, 711, 718, 897, 1269
BspANI GGCC 5 cut(s) 71, 600, 694, 1032, 1103
BspCNI CTCAG 2 cut(s) 949, 1187
BspLI GGNNCC 6 cut(s) 672, 703, 1031, 1032, 1063, 1139
BspMAI CTGCAG 2 cut(s) 700, 1126
BspOI GCTAGC 1 cut(s) 903
BspPI GGATC 2 cut(s) 665, 678
BspQI GCTCTTC 2 cut(s) 409, 850
BsrDI GCAATG 1 cut(s) 1122
BsrI ACTGG 5 cut(s) 320, 446, 955, 1228, 1261
BssECI CCNNGG 3 cut(s) 200, 727, 1034
BssMI GATC 6 cut(s) 342, 583, 670, 858, 1093, 1357
BssT1I CCWWGG 1 cut(s) 727
Bst4CI ACNGT 3 cut(s) 201, 368, 1197
Bst6I CTCTTC 2 cut(s) 409, 850
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstC8I GCNNGC 7 cut(s) 501, 602, 696, 700, 810, 901, 1171
BstDEI CTNAG 5 cut(s) 495, 608, 936, 1174, 1183
BstDSI CCRYGG 2 cut(s) 200, 727
BstENI CCTNNNNNAGG 1 cut(s) 688
BstF5I GGATG 7 cut(s) 94, 390, 514, 634, 874, 1217, 1373
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 2 cut(s) 354, 593
BstKTI GATC 6 cut(s) 345, 586, 673, 861, 1096, 1360
BstMAI GTCTC 2 cut(s) 1249, 1315
BstMBI GATC 6 cut(s) 342, 583, 670, 858, 1093, 1357
BstMWI GCNNNNNNNGC 9 cut(s) 597, 610, 708, 717, 890, 893, 896, 1121, 1179
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 3 cut(s) 276, 696, 1122
BstSLI GKGCMC 1 cut(s) 1034
BstV2I GAAGAC 2 cut(s) 398, 440
BstX2I RGATCY 2 cut(s) 342, 670
BstYI RGATCY 2 cut(s) 342, 670
BsuI GTATCC 2 cut(s) 282, 305
BsuRI GGCC 5 cut(s) 71, 600, 694, 1032, 1103
BtgI CCRYGG 2 cut(s) 200, 727
BtsCI GGATG 7 cut(s) 94, 390, 514, 634, 874, 1217, 1373
BtsIMutI CAGTG 2 cut(s) 1202, 1254
Cac8I GCNNGC 7 cut(s) 501, 602, 696, 700, 810, 901, 1171
CaiI CAGNNNCTG 1 cut(s) 372
CfoI GCGC 2 cut(s) 354, 593
Cfr13I GGNCC 2 cut(s) 1030, 1031
CseI GACGC 1 cut(s) 1231
Csp6I GTAC 2 cut(s) 244, 785
CviAII CATG 7 cut(s) 283, 448, 544, 667, 728, 925, 1276
CviQI GTAC 2 cut(s) 244, 785
DdeI CTNAG 5 cut(s) 495, 608, 936, 1174, 1183
DpnI GATC 6 cut(s) 344, 585, 672, 860, 1095, 1359
DpnII GATC 6 cut(s) 342, 583, 670, 858, 1093, 1357
DriI GACNNNNNGTC 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 409, 850
Eam1105I GACNNNNNGTC 1 cut(s) 564
EarI CTCTTC 2 cut(s) 409, 850
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 727
Eco147I AGGCCT 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 421, 1034
Eco32I GATATC 1 cut(s) 1296
Eco53kI GAGCTC 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 1033
EcoICRI GAGCTC 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 1030
EcoRV GATATC 1 cut(s) 1296
EcoT14I CCWWGG 1 cut(s) 727
EcoT38I GRGCYC 2 cut(s) 421, 1034
ErhI CCWWGG 1 cut(s) 727
Esp3I CGTCTC 1 cut(s) 1249
FaeI CATG 7 cut(s) 286, 451, 547, 670, 731, 928, 1279
FalI AAGNNNNNCTT 2 cut(s) 1347, 1379
FaqI GGGAC 1 cut(s) 1367
FatI CATG 7 cut(s) 282, 447, 543, 666, 727, 924, 1275
FbaI TGATCA 2 cut(s) 583, 1093
FblI GTMKAC 1 cut(s) 1192
FokI GGATG 7 cut(s) 81, 397, 521, 641, 861, 1204, 1360
FriOI GRGCYC 2 cut(s) 421, 1034
FspBI CTAG 2 cut(s) 561, 900
GlaI GCGC 2 cut(s) 353, 592
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 5 cut(s) 71, 600, 694, 1032, 1103
HapII CCGG 3 cut(s) 80, 327, 411
HgaI GACGC 1 cut(s) 1231
HhaI GCGC 2 cut(s) 354, 593
Hin1II CATG 7 cut(s) 286, 451, 547, 670, 731, 928, 1279
Hin6I GCGC 2 cut(s) 352, 591
HinP1I GCGC 2 cut(s) 352, 591
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 6 cut(s) 394, 462, 641, 749, 940, 961
HpaII CCGG 3 cut(s) 80, 327, 411
HphI GGTGA 5 cut(s) 43, 148, 185, 440, 944
Hpy166II GTNNAC 4 cut(s) 34, 145, 197, 1193
Hpy188I TCNGA 5 cut(s) 579, 858, 939, 1334, 1393
Hpy188III TCNNGA 4 cut(s) 309, 382, 1001, 1176
Hpy8I GTNNAC 4 cut(s) 34, 145, 197, 1193
Hpy99I CGWCG 5 cut(s) 26, 29, 107, 470, 743
HpyAV CCTTC 7 cut(s) 130, 229, 690, 981, 985, 1078, 1394
HpyCH4III ACNGT 3 cut(s) 201, 368, 1197
HpyCH4V TGCA 8 cut(s) 167, 451, 503, 525, 698, 820, 1124, 1200
HpyF10VI GCNNNNNNNGC 9 cut(s) 597, 610, 708, 717, 890, 893, 896, 1121, 1179
HpyF3I CTNAG 5 cut(s) 495, 608, 936, 1174, 1183
Hsp92II CATG 7 cut(s) 286, 451, 547, 670, 731, 928, 1279
HspAI GCGC 2 cut(s) 352, 591
Ksp22I TGATCA 2 cut(s) 583, 1093
Kzo9I GATC 6 cut(s) 342, 583, 670, 858, 1093, 1357
LguI GCTCTTC 2 cut(s) 409, 850
LmnI GCTCC 4 cut(s) 424, 707, 1067, 1207
LweI GCATC 1 cut(s) 883
MaeI CTAG 2 cut(s) 561, 900
MaeIII GTNAC 2 cut(s) 368, 1159
MalI GATC 6 cut(s) 344, 585, 672, 860, 1095, 1359
MboI GATC 6 cut(s) 342, 583, 670, 858, 1093, 1357
MflI RGATCY 2 cut(s) 342, 670
MhlI GDGCHC 4 cut(s) 421, 738, 1034, 1268
MlsI TGGCCA 1 cut(s) 600
MluCI AATT 1 cut(s) 473
MluNI TGGCCA 1 cut(s) 600
MlyI GAGTC 2 cut(s) 388, 456
MmeI TCCRAC 4 cut(s) 602, 1039, 1245, 1312
Mox20I TGGCCA 1 cut(s) 600
MscI TGGCCA 1 cut(s) 600
MseI TTAA 2 cut(s) 552, 1109
Msp20I TGGCCA 1 cut(s) 600
MspA1I CMGCKG 2 cut(s) 604, 1271
MspI CCGG 3 cut(s) 80, 327, 411
MspR9I CCNGG 1 cut(s) 81
MwoI GCNNNNNNNGC 9 cut(s) 597, 610, 708, 717, 890, 893, 896, 1121, 1179
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 727
NdeII GATC 6 cut(s) 342, 583, 670, 858, 1093, 1357
NheI GCTAGC 1 cut(s) 899
NlaIII CATG 7 cut(s) 286, 451, 547, 670, 731, 928, 1279
NlaIV GGNNCC 6 cut(s) 672, 703, 1031, 1032, 1063, 1139
PceI AGGCCT 1 cut(s) 694
PciSI GCTCTTC 2 cut(s) 409, 850
PcsI WCGNNNNNNNCGW 1 cut(s) 744
PfeI GAWTC 4 cut(s) 641, 749, 940, 961
PfoI TCCNGGA 1 cut(s) 79
PleI GAGTC 2 cut(s) 388, 456
PpsI GAGTC 2 cut(s) 388, 456
Psp124BI GAGCTC 1 cut(s) 421
PspN4I GGNNCC 6 cut(s) 672, 703, 1031, 1032, 1063, 1139
PspOMI GGGCCC 1 cut(s) 1030
PspPI GGNCC 2 cut(s) 1030, 1031
PstI CTGCAG 2 cut(s) 700, 1126
PstNI CAGNNNCTG 1 cut(s) 372
PsuI RGATCY 2 cut(s) 342, 670
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 2 cut(s) 245, 786
RsaNI GTAC 2 cut(s) 244, 785
SacI GAGCTC 1 cut(s) 421
SapI GCTCTTC 2 cut(s) 409, 850
SaqAI TTAA 2 cut(s) 552, 1109
Sau3AI GATC 6 cut(s) 342, 583, 670, 858, 1093, 1357
Sau96I GGNCC 2 cut(s) 1030, 1031
SbfI CCTGCAGG 1 cut(s) 700
SchI GAGTC 2 cut(s) 388, 456
ScrFI CCNGG 1 cut(s) 81
SdaI CCTGCAGG 1 cut(s) 700
SduI GDGCHC 4 cut(s) 421, 738, 1034, 1268
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 3 cut(s) 276, 696, 1122
Sse8387I CCTGCAGG 1 cut(s) 700
Sse9I AATT 1 cut(s) 473
SseBI AGGCCT 1 cut(s) 694
SsiI CCGC 5 cut(s) 159, 711, 718, 897, 1269
SspMI CTAG 2 cut(s) 561, 900
SstI GAGCTC 1 cut(s) 421
StuI AGGCCT 1 cut(s) 694
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 3 cut(s) 201, 368, 1197
TaqI TCGA 5 cut(s) 295, 465, 723, 1071, 1326
TasI AATT 1 cut(s) 473
TauI GCSGC 2 cut(s) 714, 899
TfiI GAWTC 4 cut(s) 641, 749, 940, 961
Tru1I TTAA 2 cut(s) 552, 1109
Tru9I TTAA 2 cut(s) 552, 1109
TscAI CASTG 2 cut(s) 1202, 1261
TspDTI ATGAA 7 cut(s) 401, 525, 932, 1032, 1206, 1292, 1368
TspGWI ACGGA 2 cut(s) 146, 1366
TspRI CASTG 2 cut(s) 1202, 1261
XagI CCTNNNNNAGG 1 cut(s) 688
XapI RAATTY 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 1192
XspI CTAG 2 cut(s) 561, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.