Rroxscaffold_6G00387990
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011692
Physical Location & Seq
Forward (+)
436740 .. 438960
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00387990.1

Sequence Viewer

Length: 1221 bp
ATGGCAGACAAGGCAAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCAGAGAGACAGGAAGTATCCCACAGGCATGAGAACTAATCGAGCAACGCAATCTGGATACTGGAAAGCCACCGGAAAAGATAAAGAGATCTACAAGCGCAAAACCAACAACAGTAACTGCCTTGTCGGGATGAAGAAGACTCTTGTGTTTTACACCGGAAGAGCTCCAAAGGGTGAGAAGACCAACTGGGTCATGCACGAATACAGACTCGACGGCAAATTCACACATTACAATCTTTCTAAGCCTGCAAAGGATGAATGGGTTGTGTGCAGGGTTTTCCACAAGAACATGGGGCTTAAAAGGACTAGTAGTCCATTATCTCCGACTGATCAAGGCGCTGGTGGCCAGCTGCTAAGGCTCAACTCTTTTGGGGATGATTTCTTGGATTCTTCTTCTTCACTCCCACCTCTCATGGATCCTACTCCTTCCTACGACAGGCCTGCAGGCTCCTATGGCGGCTACAGCTTCGACTATGGAGAGCACGACGACAACGATTCCAAAGGAAAAATCACAGCAGCACCATTATCAGTACCAGCAGCCAATAAAACAACACCAGCAGATATGCAATACTACTTTCAAGTTGGCTCTTCCACTTGTCAGATGAACTGCTTTCAGCATCCCAACGCTGCTGCTGCTGCCGCTAGCTACCAAATGAGTAACCCAACGGCAACCCCCACCATGCTTTACCCTCAGATTCATCATCGTCACCAGTTGATTCCAAACCCTTCCTTCTCTTTTCAGCCAAATAATAATCCTGATTATTACTTCCAACAAGAGATAAGGGGCCCGAGGACTTCATTCCCAAACAATCAAGGCTCCTCCTTCGACTTTCAAAGCAGCAAACTTGATCATCAGGCCATTTTAAGAGCAATGGCTGCAGCTAAAAACAGCAACCACCAGATTGAAACATCAGTAACAACAGCAGGCTCAGGAGGCTTAGATAGTAGACAGTGCAAGGTGGAGCAGTATTCATCCAACAACCAGTCTATGTTTAGCGTCTCGCAAGACACTGGATTGAGCACCGCTGACATGAACACCACCACCGAGATATCATCATCAGTTGTCTCAAAGCAAGAAATCGAGGTCGGAAGCAGCAACACATTATATGAAGATCATCTTCAAAGTCCATCCGTTGTCCCTATTTCGGACATTGAAGGCTTGTGGGACTATTGA

Protein Analysis

406

Amino Acids

45.27

Weight (kDa)

7.64

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 3 - 86 5.6e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04060 AT5G18270 AT5G18270
fragaria_vesca FvH4_1g27900
malus_domestica MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica Prupe.7G001400_v2.0.a1
pyrus_communis pycom12g00110 pycom49g00070
rosa_chinensis RchiOBHm_Chr3g0497471
rosa_laevigata RLG00000022457
rosa_multiflora Rmu_sc0008086.1_g000018
rosa_roxburghii Rroxscaffold_6G00387990
rosa_rugosa Rorug03G0293100
rosa_samantha Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana Rw3G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 994
AciI CCGC 3 cut(s) 504, 687, 1071
AclWI GGATC 2 cut(s) 458, 471
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 2 cut(s) 38, 579
AfiI CCNNNNNNNGG 2 cut(s) 483, 1192
AgsI TTSAA 5 cut(s) 626, 881, 953, 1169, 1202
AhdI GACNNNNNGTC 1 cut(s) 357
AhlI ACTAGT 1 cut(s) 353
AluBI AGCT 5 cut(s) 212, 397, 513, 693, 929
AluI AGCT 5 cut(s) 212, 397, 513, 693, 929
Alw21I GWGCWC 3 cut(s) 214, 531, 1070
Alw26I GTCTC 3 cut(s) 48, 1051, 1117
AlwI GGATC 2 cut(s) 458, 471
AlwNI CAGNNNCTG 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 835
AoxI GGCC 4 cut(s) 391, 485, 832, 903
ApaI GGGCCC 1 cut(s) 836
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 2 cut(s) 147, 386
AspS9I GGNCC 2 cut(s) 832, 833
AsuHPI GGTGA 2 cut(s) 233, 746
AsuNHI GCTAGC 1 cut(s) 689
AvaI CYCGRG 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 836
BalI TGGCCA 1 cut(s) 393
BamHI GGATCC 1 cut(s) 463
BanII GRGCYC 2 cut(s) 214, 836
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BbsI GAAGAC 2 cut(s) 191, 233
Bbv12I GWGCWC 3 cut(s) 214, 531, 1070
BccI CCATC 2 cut(s) 13, 1183
BceAI ACGGC 2 cut(s) 277, 729
BcgI CGANNNNNNTGC 2 cut(s) 470, 504
BciVI GTATCC 2 cut(s) 75, 98
BclI TGATCA 2 cut(s) 376, 895
BcoDI GTCTC 3 cut(s) 48, 1051, 1117
BcuI ACTAGT 1 cut(s) 353
BfaI CTAG 2 cut(s) 354, 690
BfmI CTRYAG 3 cut(s) 489, 508, 924
BfoI RGCGCY 1 cut(s) 387
BfuI GTATCC 2 cut(s) 75, 98
BglII AGATCT 1 cut(s) 135
BmeRI GACNNNNNGTC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 835
BmgT120I GGNCC 2 cut(s) 832, 833
BmiI GGNNCC 5 cut(s) 465, 496, 833, 834, 865
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 673
BmtI GCTAGC 1 cut(s) 693
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 2 cut(s) 191, 233
Bpu10I CCTNAGC 2 cut(s) 401, 976
BsaJI CCNNGG 1 cut(s) 836
BsaWI WCCGGW 2 cut(s) 119, 203
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 1192
Bse1I ACTGG 5 cut(s) 113, 239, 757, 1030, 1063
Bse3DI GCAATG 1 cut(s) 924
BseDI CCNNGG 1 cut(s) 836
BseGI GGATG 6 cut(s) 183, 307, 427, 664, 1019, 1175
BseLI CCNNNNNNNGG 2 cut(s) 483, 1192
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 2 cut(s) 752, 990
BseNI ACTGG 5 cut(s) 113, 239, 757, 1030, 1063
BseRI GAGGAG 1 cut(s) 856
BseSI GKGCMC 1 cut(s) 836
BsgI GTGCAG 1 cut(s) 337
BshFI GGCC 4 cut(s) 393, 487, 834, 905
BsiHKAI GWGCWC 3 cut(s) 214, 531, 1070
BsiHKCI CYCGRG 1 cut(s) 835
BsiSI CCGG 2 cut(s) 120, 204
BslFI GGGAC 1 cut(s) 1169
BslI CCNNNNNNNGG 2 cut(s) 483, 1192
BsmAI GTCTC 3 cut(s) 48, 1051, 1117
BsmBI CGTCTC 1 cut(s) 1051
BsmFI GGGAC 1 cut(s) 1169
BsnI GGCC 4 cut(s) 393, 487, 834, 905
BsoBI CYCGRG 1 cut(s) 835
Bsp120I GGGCCC 1 cut(s) 832
Bsp1286I GDGCHC 4 cut(s) 214, 531, 836, 1070
Bsp143I GATC 5 cut(s) 135, 376, 463, 895, 1159
BspACI CCGC 3 cut(s) 504, 687, 1071
BspANI GGCC 4 cut(s) 393, 487, 834, 905
BspCNI CTCAG 2 cut(s) 751, 989
BspLI GGNNCC 5 cut(s) 465, 496, 833, 834, 865
BspMAI CTGCAG 2 cut(s) 493, 928
BspOI GCTAGC 1 cut(s) 693
BspPI GGATC 2 cut(s) 458, 471
BspQI GCTCTTC 2 cut(s) 202, 640
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 5 cut(s) 113, 239, 757, 1030, 1063
BssECI CCNNGG 1 cut(s) 836
BssMI GATC 5 cut(s) 135, 376, 463, 895, 1159
Bst4CI ACNGT 2 cut(s) 161, 999
Bst6I CTCTTC 2 cut(s) 202, 640
BstAPI GCANNNNNTGC 1 cut(s) 923
BstC8I GCNNGC 6 cut(s) 294, 395, 489, 493, 691, 973
BstDEI CTNAG 5 cut(s) 288, 401, 738, 976, 985
BstENI CCTNNNNNAGG 1 cut(s) 481
BstF5I GGATG 6 cut(s) 183, 307, 427, 664, 1019, 1175
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 2 cut(s) 147, 386
BstKTI GATC 5 cut(s) 138, 379, 466, 898, 1162
BstMAI GTCTC 3 cut(s) 48, 1051, 1117
BstMBI GATC 5 cut(s) 135, 376, 463, 895, 1159
BstSFI CTRYAG 3 cut(s) 489, 508, 924
BstSLI GKGCMC 1 cut(s) 836
BstV2I GAAGAC 2 cut(s) 191, 233
BstX2I RGATCY 2 cut(s) 135, 463
BstYI RGATCY 2 cut(s) 135, 463
BsuI GTATCC 2 cut(s) 75, 98
BsuRI GGCC 4 cut(s) 393, 487, 834, 905
BtsCI GGATG 6 cut(s) 183, 307, 427, 664, 1019, 1175
BtsIMutI CAGTG 2 cut(s) 1004, 1056
Cac8I GCNNGC 6 cut(s) 294, 395, 489, 493, 691, 973
CaiI CAGNNNCTG 1 cut(s) 165
CfoI GCGC 2 cut(s) 147, 386
Cfr13I GGNCC 2 cut(s) 832, 833
CseI GACGC 1 cut(s) 1033
Csp6I GTAC 2 cut(s) 37, 578
CviAII CATG 6 cut(s) 76, 241, 337, 460, 727, 1078
CviQI GTAC 2 cut(s) 37, 578
DdeI CTNAG 5 cut(s) 288, 401, 738, 976, 985
DpnI GATC 5 cut(s) 137, 378, 465, 897, 1161
DpnII GATC 5 cut(s) 135, 376, 463, 895, 1159
DriI GACNNNNNGTC 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 202, 640
Eam1105I GACNNNNNGTC 1 cut(s) 357
EarI CTCTTC 2 cut(s) 202, 640
Ecl136II GAGCTC 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 487
Eco24I GRGCYC 2 cut(s) 214, 836
Eco32I GATATC 1 cut(s) 1098
Eco53kI GAGCTC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 835
EcoICRI GAGCTC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 832
EcoRV GATATC 1 cut(s) 1098
EcoT38I GRGCYC 2 cut(s) 214, 836
Esp3I CGTCTC 1 cut(s) 1051
FaeI CATG 6 cut(s) 79, 244, 340, 463, 730, 1081
FalI AAGNNNNNCTT 2 cut(s) 1149, 1181
FaqI GGGAC 1 cut(s) 1169
FatI CATG 6 cut(s) 75, 240, 336, 459, 726, 1077
FbaI TGATCA 2 cut(s) 376, 895
FblI GTMKAC 1 cut(s) 994
FokI GGATG 6 cut(s) 190, 314, 434, 651, 1006, 1162
FriOI GRGCYC 2 cut(s) 214, 836
FspBI CTAG 2 cut(s) 354, 690
GlaI GCGC 2 cut(s) 146, 385
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 4 cut(s) 393, 487, 834, 905
HapII CCGG 2 cut(s) 120, 204
HgaI GACGC 1 cut(s) 1033
HhaI GCGC 2 cut(s) 147, 386
Hin1II CATG 6 cut(s) 79, 244, 340, 463, 730, 1081
Hin6I GCGC 2 cut(s) 145, 384
HinP1I GCGC 2 cut(s) 145, 384
HinfI GANTC 6 cut(s) 187, 255, 434, 542, 742, 763
HpaII CCGG 2 cut(s) 120, 204
HphI GGTGA 2 cut(s) 233, 746
Hpy166II GTNNAC 1 cut(s) 995
Hpy188I TCNGA 5 cut(s) 372, 648, 741, 1136, 1195
Hpy188III TCNNGA 4 cut(s) 102, 175, 803, 978
Hpy8I GTNNAC 1 cut(s) 995
Hpy99I CGWCG 2 cut(s) 263, 536
HpyAV CCTTC 6 cut(s) 22, 483, 783, 787, 880, 1196
HpyCH4III ACNGT 2 cut(s) 161, 999
HpyCH4V TGCA 7 cut(s) 244, 296, 318, 491, 613, 926, 1002
HpyF3I CTNAG 5 cut(s) 288, 401, 738, 976, 985
Hsp92II CATG 6 cut(s) 79, 244, 340, 463, 730, 1081
HspAI GCGC 2 cut(s) 145, 384
Ksp22I TGATCA 2 cut(s) 376, 895
Kzo9I GATC 5 cut(s) 135, 376, 463, 895, 1159
LguI GCTCTTC 2 cut(s) 202, 640
LmnI GCTCC 4 cut(s) 217, 500, 869, 1009
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 354, 690
MaeIII GTNAC 4 cut(s) 161, 704, 752, 961
MalI GATC 5 cut(s) 137, 378, 465, 897, 1161
MboI GATC 5 cut(s) 135, 376, 463, 895, 1159
MflI RGATCY 2 cut(s) 135, 463
MhlI GDGCHC 4 cut(s) 214, 531, 836, 1070
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 2 cut(s) 181, 249
MmeI TCCRAC 4 cut(s) 395, 841, 1047, 1114
MnlI CCTC 6 cut(s) 465, 747, 831, 877, 974, 1123
Mox20I TGGCCA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 393
MseI TTAA 2 cut(s) 345, 911
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 2 cut(s) 397, 1073
MspI CCGG 2 cut(s) 120, 204
NdeII GATC 5 cut(s) 135, 376, 463, 895, 1159
NheI GCTAGC 1 cut(s) 689
NlaIII CATG 6 cut(s) 79, 244, 340, 463, 730, 1081
NlaIV GGNNCC 5 cut(s) 465, 496, 833, 834, 865
NmuCI GTSAC 1 cut(s) 752
PceI AGGCCT 1 cut(s) 487
PciSI GCTCTTC 2 cut(s) 202, 640
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PfeI GAWTC 4 cut(s) 434, 542, 742, 763
PleI GAGTC 2 cut(s) 181, 249
PpsI GAGTC 2 cut(s) 181, 249
Psp124BI GAGCTC 1 cut(s) 214
PspN4I GGNNCC 5 cut(s) 465, 496, 833, 834, 865
PspOMI GGGCCC 1 cut(s) 832
PspPI GGNCC 2 cut(s) 832, 833
PstI CTGCAG 2 cut(s) 493, 928
PstNI CAGNNNCTG 1 cut(s) 165
PsuI RGATCY 2 cut(s) 135, 463
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 2 cut(s) 38, 579
RsaNI GTAC 2 cut(s) 37, 578
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 214
SapI GCTCTTC 2 cut(s) 202, 640
SaqAI TTAA 2 cut(s) 345, 911
Sau3AI GATC 5 cut(s) 135, 376, 463, 895, 1159
Sau96I GGNCC 2 cut(s) 832, 833
SbfI CCTGCAGG 1 cut(s) 493
SchI GAGTC 2 cut(s) 181, 249
SdaI CCTGCAGG 1 cut(s) 493
SduI GDGCHC 4 cut(s) 214, 531, 836, 1070
SetI ASST 8 cut(s) 214, 399, 457, 515, 695, 931, 1008, 1134
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 3 cut(s) 489, 508, 924
SmiMI CAYNNNNRTG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 353
Sse8387I CCTGCAGG 1 cut(s) 493
Sse9I AATT 1 cut(s) 266
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 3 cut(s) 504, 687, 1071
SspMI CTAG 2 cut(s) 354, 690
SstI GAGCTC 1 cut(s) 214
StuI AGGCCT 1 cut(s) 487
TaaI ACNGT 2 cut(s) 161, 999
TaqI TCGA 5 cut(s) 88, 258, 516, 873, 1128
TasI AATT 1 cut(s) 266
TauI GCSGC 2 cut(s) 507, 689
TfiI GAWTC 4 cut(s) 434, 542, 742, 763
Tru1I TTAA 2 cut(s) 345, 911
Tru9I TTAA 2 cut(s) 345, 911
TscAI CASTG 2 cut(s) 1004, 1063
TseFI GTSAC 1 cut(s) 752
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 8 cut(s) 194, 318, 665, 734, 834, 1008, 1094, 1170
TspGWI ACGGA 1 cut(s) 1168
TspRI CASTG 2 cut(s) 1004, 1063
XagI CCTNNNNNAGG 1 cut(s) 481
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 994
XspI CTAG 2 cut(s) 354, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.