Rh3CG371100
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0011692
Physical Location & Seq
Reverse (-)
47554378 .. 47556945
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG371100.1

Sequence Viewer

Length: 888 bp
ATGGGGCTTAAAAGGACTAGCAGTCCATTATCTCCGACTGATCAAGGCGCTGGTGGCCAGCTGCTAAGGCTCAACTCTTTTGGGGATGATTTCTTGGATTCTTCTTCTTCACTCCCACCTCTCATGGATCCTACTCCTTCCTACGACAGGCCTGCAGGCTCCTATGGCGGCTACCGCTTCGACCATGGAGAGCACGACGACAACGATTCCAAAGGAAAAATCACAGCAGCACCATTATCAGTACCATCAGCCAATAAAACAACGCCAGCAGATATGCAATACTACTTTCAGCAAGTTGGCTCTTCCACTCGTCAGATCAACTGCTTTCAGCATCCCAACGCTGCTGCTGCTGCCGCTAGCTACCAAATGAGTAACCCAATGGCAACCCCCACCATGTTATACCCTCAGATTCATCATAATCACCAGTTGATTCCAAACCCTTCCTTCTCTTTTCAGCCAAATAATAATCCTGATTATTACTTCCAACAAGAGATAAGGGGCCCGAGGACTTCATTCCCAAACAATCAAGGCTCCTCCTTCGACTTTCAAAGCAGCAAACTTGATCATCAGGCCATTTTAAGAGCAATGGCTGCAGCTAAAAACAGGAACCACCAGATTGAAACATCAGTAACAACAGCAGGCTCAGGAGGCTTAGATAGTAGACAGTGCAAGGTGGAGCAGTATTCATCCAACAACCAGTCTATGTTTAGCGTCTCGCAAGACACTGGATTGAGCACCGCTGACATGAACACCACCACCGAGATATCATCATCAGTTGTCTCAAAGCAAGAAATCGAGGTCGGAAGCAGCAACACATTATATGAAGATCATCTTCAAAGTCCATCCGTTGTCCCTATTTCGGACATTGAAGGCTTGTGGGACTATTGA

Protein Analysis

295

Amino Acids

32.21

Weight (kDa)

5.13

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04060 AT5G18270 AT5G18270
fragaria_vesca FvH4_1g27900
malus_domestica MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica Prupe.7G001400_v2.0.a1
pyrus_communis pycom12g00110 pycom49g00070
rosa_chinensis RchiOBHm_Chr3g0497471
rosa_laevigata RLG00000022457
rosa_multiflora Rmu_sc0008086.1_g000018
rosa_roxburghii Rroxscaffold_6G00387990
rosa_rugosa Rorug03G0293100
rosa_samantha Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana Rw3G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 661
AciI CCGC 4 cut(s) 168, 175, 354, 738
AclWI GGATC 2 cut(s) 122, 135
AcoI YGGCCR 1 cut(s) 55
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 147, 859
AgsI TTSAA 4 cut(s) 548, 620, 836, 869
AhdI GACNNNNNGTC 1 cut(s) 21
AluBI AGCT 3 cut(s) 61, 360, 596
AluI AGCT 3 cut(s) 61, 360, 596
Alw21I GWGCWC 2 cut(s) 195, 737
Alw26I GTCTC 2 cut(s) 718, 784
AlwI GGATC 2 cut(s) 122, 135
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 4 cut(s) 55, 149, 499, 570
ApaI GGGCCC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 499, 500
AsuHPI GGTGA 1 cut(s) 413
AsuNHI GCTAGC 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 503
BalI TGGCCA 1 cut(s) 57
BamHI GGATCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 503
Bbv12I GWGCWC 2 cut(s) 195, 737
BccI CCATC 2 cut(s) 253, 850
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BclI TGATCA 2 cut(s) 40, 562
BcoDI GTCTC 2 cut(s) 718, 784
BfaI CTAG 2 cut(s) 18, 357
BfmI CTRYAG 2 cut(s) 153, 591
BfoI RGCGCY 1 cut(s) 51
BmeRI GACNNNNNGTC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 502
BmgT120I GGNCC 2 cut(s) 499, 500
BmiI GGNNCC 6 cut(s) 129, 160, 500, 501, 532, 608
BmsI GCATC 1 cut(s) 340
BmtI GCTAGC 1 cut(s) 360
Bpu10I CCTNAGC 2 cut(s) 65, 643
BsaJI CCNNGG 2 cut(s) 184, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 859
Bse1I ACTGG 3 cut(s) 424, 697, 730
Bse3DI GCAATG 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 184, 503
BseGI GGATG 4 cut(s) 91, 331, 686, 842
BseLI CCNNNNNNNGG 2 cut(s) 147, 859
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 2 cut(s) 419, 657
BseNI ACTGG 3 cut(s) 424, 697, 730
BseRI GAGGAG 1 cut(s) 523
BseSI GKGCMC 1 cut(s) 503
BshFI GGCC 4 cut(s) 57, 151, 501, 572
BsiHKAI GWGCWC 2 cut(s) 195, 737
BsiHKCI CYCGRG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 2 cut(s) 147, 859
BsmAI GTCTC 2 cut(s) 718, 784
BsmBI CGTCTC 1 cut(s) 718
BsmFI GGGAC 1 cut(s) 836
BsnI GGCC 4 cut(s) 57, 151, 501, 572
BsoBI CYCGRG 1 cut(s) 502
Bsp120I GGGCCC 1 cut(s) 499
Bsp1286I GDGCHC 3 cut(s) 195, 503, 737
Bsp143I GATC 5 cut(s) 40, 127, 315, 562, 826
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 4 cut(s) 168, 175, 354, 738
BspANI GGCC 4 cut(s) 57, 151, 501, 572
BspCNI CTCAG 2 cut(s) 418, 656
BspLI GGNNCC 6 cut(s) 129, 160, 500, 501, 532, 608
BspMAI CTGCAG 2 cut(s) 157, 595
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 2 cut(s) 122, 135
BspQI GCTCTTC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 591
BsrI ACTGG 3 cut(s) 424, 697, 730
BssECI CCNNGG 2 cut(s) 184, 503
BssMI GATC 5 cut(s) 40, 127, 315, 562, 826
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 666
Bst6I CTCTTC 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 6 cut(s) 59, 153, 157, 267, 358, 640
BstDEI CTNAG 4 cut(s) 65, 405, 643, 652
BstDSI CCRYGG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 145
BstF5I GGATG 4 cut(s) 91, 331, 686, 842
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 5 cut(s) 43, 130, 318, 565, 829
BstMAI GTCTC 2 cut(s) 718, 784
BstMBI GATC 5 cut(s) 40, 127, 315, 562, 826
BstMWI GCNNNNNNNGC 9 cut(s) 54, 67, 165, 174, 347, 350, 353, 590, 648
BstSFI CTRYAG 2 cut(s) 153, 591
BstSLI GKGCMC 1 cut(s) 503
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 4 cut(s) 57, 151, 501, 572
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 4 cut(s) 91, 331, 686, 842
BtsIMutI CAGTG 2 cut(s) 671, 723
Cac8I GCNNGC 6 cut(s) 59, 153, 157, 267, 358, 640
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 2 cut(s) 499, 500
CseI GACGC 1 cut(s) 700
Csp6I GTAC 1 cut(s) 242
CviAII CATG 4 cut(s) 124, 185, 394, 745
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 4 cut(s) 65, 405, 643, 652
DpnI GATC 5 cut(s) 42, 129, 317, 564, 828
DpnII GATC 5 cut(s) 40, 127, 315, 562, 826
DriI GACNNNNNGTC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 307
Eam1105I GACNNNNNGTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 503
Eco32I GATATC 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 499
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 718
FaeI CATG 4 cut(s) 127, 188, 397, 748
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 1 cut(s) 836
FatI CATG 4 cut(s) 123, 184, 393, 744
FbaI TGATCA 2 cut(s) 40, 562
FblI GTMKAC 1 cut(s) 661
FokI GGATG 4 cut(s) 98, 318, 673, 829
FriOI GRGCYC 1 cut(s) 503
FspBI CTAG 2 cut(s) 18, 357
GlaI GCGC 1 cut(s) 49
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 4 cut(s) 57, 151, 501, 572
HgaI GACGC 1 cut(s) 700
HhaI GCGC 1 cut(s) 50
Hin1II CATG 4 cut(s) 127, 188, 397, 748
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 4 cut(s) 98, 206, 409, 430
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 662
Hpy188I TCNGA 5 cut(s) 36, 315, 408, 803, 862
Hpy188III TCNNGA 2 cut(s) 470, 645
Hpy8I GTNNAC 1 cut(s) 662
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 5 cut(s) 147, 450, 454, 547, 863
HpyCH4III ACNGT 1 cut(s) 666
HpyCH4V TGCA 4 cut(s) 155, 277, 593, 669
HpyF10VI GCNNNNNNNGC 9 cut(s) 54, 67, 165, 174, 347, 350, 353, 590, 648
HpyF3I CTNAG 4 cut(s) 65, 405, 643, 652
Hsp92II CATG 4 cut(s) 127, 188, 397, 748
HspAI GCGC 1 cut(s) 48
Ksp22I TGATCA 2 cut(s) 40, 562
Kzo9I GATC 5 cut(s) 40, 127, 315, 562, 826
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 3 cut(s) 164, 536, 676
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 18, 357
MaeIII GTNAC 2 cut(s) 371, 628
MalI GATC 5 cut(s) 42, 129, 317, 564, 828
MboI GATC 5 cut(s) 40, 127, 315, 562, 826
MboII GAAGA 6 cut(s) 93, 96, 99, 294, 824, 836
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 3 cut(s) 195, 503, 737
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
MmeI TCCRAC 4 cut(s) 59, 508, 714, 781
MnlI CCTC 6 cut(s) 129, 414, 498, 544, 641, 790
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MseI TTAA 2 cut(s) 9, 578
Msp20I TGGCCA 1 cut(s) 57
MspA1I CMGCKG 2 cut(s) 61, 740
MwoI GCNNNNNNNGC 9 cut(s) 54, 67, 165, 174, 347, 350, 353, 590, 648
NcoI CCATGG 1 cut(s) 184
NdeII GATC 5 cut(s) 40, 127, 315, 562, 826
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 4 cut(s) 127, 188, 397, 748
NlaIV GGNNCC 6 cut(s) 129, 160, 500, 501, 532, 608
PceI AGGCCT 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 4 cut(s) 98, 206, 409, 430
PspN4I GGNNCC 6 cut(s) 129, 160, 500, 501, 532, 608
PspOMI GGGCCC 1 cut(s) 499
PspPI GGNCC 2 cut(s) 499, 500
PstI CTGCAG 2 cut(s) 157, 595
PsuI RGATCY 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SapI GCTCTTC 1 cut(s) 307
SaqAI TTAA 2 cut(s) 9, 578
Sau3AI GATC 5 cut(s) 40, 127, 315, 562, 826
Sau96I GGNCC 2 cut(s) 499, 500
SbfI CCTGCAGG 1 cut(s) 157
SdaI CCTGCAGG 1 cut(s) 157
SduI GDGCHC 3 cut(s) 195, 503, 737
SetI ASST 6 cut(s) 63, 121, 362, 598, 675, 801
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 2 cut(s) 153, 591
Sse8387I CCTGCAGG 1 cut(s) 157
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 4 cut(s) 168, 175, 354, 738
SspMI CTAG 2 cut(s) 18, 357
StuI AGGCCT 1 cut(s) 151
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 666
TaqI TCGA 3 cut(s) 180, 540, 795
TauI GCSGC 2 cut(s) 171, 356
TfiI GAWTC 4 cut(s) 98, 206, 409, 430
Tru1I TTAA 2 cut(s) 9, 578
Tru9I TTAA 2 cut(s) 9, 578
TscAI CASTG 2 cut(s) 671, 730
TspDTI ATGAA 5 cut(s) 401, 501, 675, 761, 837
TspGWI ACGGA 1 cut(s) 835
TspRI CASTG 2 cut(s) 671, 730
XagI CCTNNNNNAGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 661
XspI CTAG 2 cut(s) 18, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.