RchiOBHm_Chr3g0497471
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011692
Physical Location & Seq
Reverse (-)
49444077 .. 49446232
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45964

Sequence Viewer

Length: 1425 bp
ATGATGGAAGAAGAAGCTGTCGTGGTGAACCAAGGAGGAGGAGGAGGAGATGATGAGCTGATGGCCTTGCCTCCGGGATTTCGTTTCCATCCCACCGATGAGGAAATCATAACTTGCTATCTCACGGAGAAGGTGGTCAACAGCAACTTCACCGCAACTGCAATCGGTGAAGCTGATTTGAACAAGTGTGAACCGTGGGATTTGCCCAACAAGGCAAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCAGAGAGACAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCAACGCAATCTGGATACTGGAAAGCCACCGGAAAAGATAAAGAGATCTACAAGCGCAAAACCAACAACAGTAACTGCCTTGTCGGGATGAAGAAGACTCTTGTGTTTTACACCGGAAGAGCTCCAAAGGGTGAGAAGACCAACTGGGTCATGCACGAATACAGACTCGACGGCAAATTCACACATTACAATCTTTCTAAGCCTGCAAAGGATGAATGGGTTGTGTGCAGGGTTTTCCACAAGAACATGGGGCTTAAAAGAACTAGTAGTCCATTATCTCCGACTGATCAAAGCGCTGGTGGCCAGCTGCTAAGGCTCAACTCTTTTGGGGATGATTTCTTGGATTCTTCTTCTTCACTCCCACCTCTCATGGATCCTACTCCTTCCTACGACAGGCCTGCAGGCTCCTATGGCGGCTACCGCTTCGACTATGGAGAGCACGACGACAACGATTCCAAAGGAAAAATCACAGCAGCACCATTATCAGTACCATCAGCTAATAAAACAACACCAGCAGATATGCAATACTACTTTCAGCAAGTTGGCTCTTCCACTCGTCAGATCAACTGCTTTCAGCATCCCAACGCTGCTGCTGCTGCCGCTAGCTACCAAATGAGTAACCCAATGGCAACCCCCACCATGTTATACCCTCAGATTCATCATAATCACCAGTTGATTCCAAACCCTTCCTTCTCTTTTCAGCCAAATAATAATCCTGATTATTACTTCCAACAAGAGATAAGGGGCCCGAGGACTTCATTCCCAAACAATCAAGGCTCCTCCTTCGACTTTCAAAGCAGCAAACTTGATCATCAGGCCATTTTAAGAGCAATGGCTGCAGCTAAAAACAGGAACCACCAGATTGAAACATCAGTAACAACAGCAGGCTCAGGAGGCTTAGATAGTAGACAGTGCAAGGTGGAGCAGTATTCATCCAACAACCAGTCTATGTTTAGCGTCTCGCAAGATACTGGATTGAGCACCGCTGACATGAACACCACCACCGAGATATCATCATCAGTTGTCTCAAAGCAAGAAATCGAGGTCGGAAGCAGCAACACATTATATGAAGATCATCTTCAAAGTCCATCCGTTGTCCCTATTTCGGACATTGAAGGCTTGTGGGACTATTGA

Protein Analysis

474

Amino Acids

52.9

Weight (kDa)

5.97

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 153 2e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04060 AT5G18270 AT5G18270
fragaria_vesca FvH4_1g27900
malus_domestica MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica Prupe.7G001400_v2.0.a1
pyrus_communis pycom12g00110 pycom49g00070
rosa_chinensis RchiOBHm_Chr3g0497471
rosa_laevigata RLG00000022457
rosa_multiflora Rmu_sc0008086.1_g000018
rosa_roxburghii Rroxscaffold_6G00387990
rosa_rugosa Rorug03G0293100
rosa_samantha Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana Rw3G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1198
AciI CCGC 5 cut(s) 153, 705, 712, 891, 1275
AclWI GGATC 2 cut(s) 659, 672
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 1 cut(s) 467
AfaI GTAC 2 cut(s) 239, 780
AfeI AGCGCT 1 cut(s) 586
AfiI CCNNNNNNNGG 2 cut(s) 684, 1396
AgsI TTSAA 5 cut(s) 181, 1085, 1157, 1373, 1406
AhlI ACTAGT 1 cut(s) 554
AloI GAACNNNNNNTCC 2 cut(s) 544, 576
AluBI AGCT 8 cut(s) 17, 58, 173, 413, 598, 788, 897, 1133
AluI AGCT 8 cut(s) 17, 58, 173, 413, 598, 788, 897, 1133
Alw21I GWGCWC 3 cut(s) 415, 732, 1274
Alw26I GTCTC 3 cut(s) 249, 1255, 1321
AlwI GGATC 2 cut(s) 659, 672
AlwNI CAGNNNCTG 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 1039
Aor51HI AGCGCT 1 cut(s) 586
AoxI GGCC 5 cut(s) 63, 592, 686, 1036, 1107
ApaI GGGCCC 1 cut(s) 1040
ApoI RAATTY 1 cut(s) 467
AspLEI GCGC 2 cut(s) 348, 587
AspS9I GGNCC 2 cut(s) 1036, 1037
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 5 cut(s) 37, 142, 179, 434, 950
AsuNHI GCTAGC 1 cut(s) 893
AvaI CYCGRG 1 cut(s) 1039
BaeGI GKGCMC 1 cut(s) 1040
BalI TGGCCA 1 cut(s) 594
BamHI GGATCC 1 cut(s) 664
BanII GRGCYC 2 cut(s) 415, 1040
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BbsI GAAGAC 2 cut(s) 392, 434
Bbv12I GWGCWC 3 cut(s) 415, 732, 1274
BccI CCATC 5 cut(s) 55, 96, 214, 790, 1387
BceAI ACGGC 1 cut(s) 478
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciVI GTATCC 2 cut(s) 276, 299
BclI TGATCA 2 cut(s) 577, 1099
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 249, 1255, 1321
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 2 cut(s) 555, 894
BfmI CTRYAG 3 cut(s) 270, 690, 1128
BfoI RGCGCY 1 cut(s) 588
BfuI GTATCC 2 cut(s) 276, 299
BglII AGATCT 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 1039
BmgT120I GGNCC 2 cut(s) 1036, 1037
BmiI GGNNCC 6 cut(s) 666, 697, 1037, 1038, 1069, 1145
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 1 cut(s) 877
BmtI GCTAGC 1 cut(s) 897
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 2 cut(s) 392, 434
Bpu10I CCTNAGC 2 cut(s) 602, 1180
BpuMI CCSGG 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 31, 194, 1040
BsaWI WCCGGW 2 cut(s) 320, 404
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 684, 1396
Bse1I ACTGG 5 cut(s) 314, 440, 961, 1234, 1267
Bse3DI GCAATG 1 cut(s) 1128
BseDI CCNNGG 3 cut(s) 31, 194, 1040
BseGI GGATG 7 cut(s) 88, 384, 508, 628, 868, 1223, 1379
BseLI CCNNNNNNNGG 2 cut(s) 684, 1396
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 2 cut(s) 956, 1194
BseNI ACTGG 5 cut(s) 314, 440, 961, 1234, 1267
BseRI GAGGAG 5 cut(s) 51, 54, 57, 60, 1060
BseSI GKGCMC 1 cut(s) 1040
BsgI GTGCAG 1 cut(s) 538
BshFI GGCC 5 cut(s) 65, 594, 688, 1038, 1109
BsiHKAI GWGCWC 3 cut(s) 415, 732, 1274
BsiHKCI CYCGRG 1 cut(s) 1039
BsiSI CCGG 3 cut(s) 74, 321, 405
BslFI GGGAC 1 cut(s) 1373
BslI CCNNNNNNNGG 2 cut(s) 684, 1396
BsmAI GTCTC 3 cut(s) 249, 1255, 1321
BsmBI CGTCTC 1 cut(s) 1255
BsmFI GGGAC 1 cut(s) 1373
BsnI GGCC 5 cut(s) 65, 594, 688, 1038, 1109
BsoBI CYCGRG 1 cut(s) 1039
Bsp120I GGGCCC 1 cut(s) 1036
Bsp1286I GDGCHC 4 cut(s) 415, 732, 1040, 1274
Bsp143I GATC 6 cut(s) 336, 577, 664, 852, 1099, 1363
BspACI CCGC 5 cut(s) 153, 705, 712, 891, 1275
BspANI GGCC 5 cut(s) 65, 594, 688, 1038, 1109
BspCNI CTCAG 2 cut(s) 955, 1193
BspLI GGNNCC 6 cut(s) 666, 697, 1037, 1038, 1069, 1145
BspMAI CTGCAG 2 cut(s) 694, 1132
BspOI GCTAGC 1 cut(s) 897
BspPI GGATC 2 cut(s) 659, 672
BspQI GCTCTTC 2 cut(s) 403, 844
BsrDI GCAATG 1 cut(s) 1128
BsrI ACTGG 5 cut(s) 314, 440, 961, 1234, 1267
BssECI CCNNGG 3 cut(s) 31, 194, 1040
BssMI GATC 6 cut(s) 336, 577, 664, 852, 1099, 1363
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 3 cut(s) 195, 362, 1203
Bst6I CTCTTC 2 cut(s) 403, 844
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstC8I GCNNGC 6 cut(s) 495, 596, 690, 694, 895, 1177
BstDEI CTNAG 5 cut(s) 489, 602, 942, 1180, 1189
BstDSI CCRYGG 1 cut(s) 194
BstENI CCTNNNNNAGG 1 cut(s) 682
BstF5I GGATG 7 cut(s) 88, 384, 508, 628, 868, 1223, 1379
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 2 cut(s) 348, 587
BstKTI GATC 6 cut(s) 339, 580, 667, 855, 1102, 1366
BstMAI GTCTC 3 cut(s) 249, 1255, 1321
BstMBI GATC 6 cut(s) 336, 577, 664, 852, 1099, 1363
BstMWI GCNNNNNNNGC 9 cut(s) 591, 604, 702, 711, 884, 887, 890, 1127, 1185
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 3 cut(s) 270, 690, 1128
BstSLI GKGCMC 1 cut(s) 1040
BstV2I GAAGAC 2 cut(s) 392, 434
BstX2I RGATCY 2 cut(s) 336, 664
BstYI RGATCY 2 cut(s) 336, 664
BsuI GTATCC 2 cut(s) 276, 299
BsuRI GGCC 5 cut(s) 65, 594, 688, 1038, 1109
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 7 cut(s) 88, 384, 508, 628, 868, 1223, 1379
BtsIMutI CAGTG 1 cut(s) 1208
Cac8I GCNNGC 6 cut(s) 495, 596, 690, 694, 895, 1177
CaiI CAGNNNCTG 1 cut(s) 366
CfoI GCGC 2 cut(s) 348, 587
Cfr13I GGNCC 2 cut(s) 1036, 1037
CseI GACGC 1 cut(s) 1237
Csp6I GTAC 2 cut(s) 238, 779
CviAII CATG 6 cut(s) 277, 442, 538, 661, 931, 1282
CviQI GTAC 2 cut(s) 238, 779
DdeI CTNAG 5 cut(s) 489, 602, 942, 1180, 1189
DpnI GATC 6 cut(s) 338, 579, 666, 854, 1101, 1365
DpnII GATC 6 cut(s) 336, 577, 664, 852, 1099, 1363
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 2 cut(s) 403, 844
EarI CTCTTC 2 cut(s) 403, 844
Ecl136II GAGCTC 1 cut(s) 413
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 688
Eco24I GRGCYC 2 cut(s) 415, 1040
Eco32I GATATC 1 cut(s) 1302
Eco47III AGCGCT 1 cut(s) 586
Eco53kI GAGCTC 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 1039
EcoICRI GAGCTC 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 682
EcoO109I RGGNCCY 1 cut(s) 1036
EcoRV GATATC 1 cut(s) 1302
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 2 cut(s) 415, 1040
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 1255
FaeI CATG 6 cut(s) 280, 445, 541, 664, 934, 1285
FalI AAGNNNNNCTT 2 cut(s) 1353, 1385
FaqI GGGAC 1 cut(s) 1373
FatI CATG 6 cut(s) 276, 441, 537, 660, 930, 1281
FbaI TGATCA 2 cut(s) 577, 1099
FblI GTMKAC 1 cut(s) 1198
FokI GGATG 7 cut(s) 75, 391, 515, 635, 855, 1210, 1366
FriOI GRGCYC 2 cut(s) 415, 1040
FspBI CTAG 2 cut(s) 555, 894
GlaI GCGC 2 cut(s) 347, 586
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 5 cut(s) 65, 594, 688, 1038, 1109
HapII CCGG 3 cut(s) 74, 321, 405
HgaI GACGC 1 cut(s) 1237
HhaI GCGC 2 cut(s) 348, 587
Hin1II CATG 6 cut(s) 280, 445, 541, 664, 934, 1285
Hin6I GCGC 2 cut(s) 346, 585
HinP1I GCGC 2 cut(s) 346, 585
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 7 cut(s) 286, 388, 456, 635, 743, 946, 967
HpaII CCGG 3 cut(s) 74, 321, 405
HphI GGTGA 5 cut(s) 37, 142, 179, 434, 950
Hpy166II GTNNAC 4 cut(s) 28, 139, 191, 1199
Hpy188I TCNGA 5 cut(s) 573, 852, 945, 1340, 1399
Hpy188III TCNNGA 4 cut(s) 303, 376, 1007, 1182
Hpy8I GTNNAC 4 cut(s) 28, 139, 191, 1199
Hpy99I CGWCG 2 cut(s) 464, 737
HpyAV CCTTC 7 cut(s) 124, 223, 684, 987, 991, 1084, 1400
HpyCH4III ACNGT 3 cut(s) 195, 362, 1203
HpyCH4V TGCA 8 cut(s) 161, 445, 497, 519, 692, 814, 1130, 1206
HpyF10VI GCNNNNNNNGC 9 cut(s) 591, 604, 702, 711, 884, 887, 890, 1127, 1185
HpyF3I CTNAG 5 cut(s) 489, 602, 942, 1180, 1189
Hsp92II CATG 6 cut(s) 280, 445, 541, 664, 934, 1285
HspAI GCGC 2 cut(s) 346, 585
Ksp22I TGATCA 2 cut(s) 577, 1099
Kzo9I GATC 6 cut(s) 336, 577, 664, 852, 1099, 1363
LguI GCTCTTC 2 cut(s) 403, 844
LmnI GCTCC 4 cut(s) 418, 701, 1073, 1213
LweI GCATC 1 cut(s) 877
MaeI CTAG 2 cut(s) 555, 894
MaeIII GTNAC 3 cut(s) 362, 908, 1165
MalI GATC 6 cut(s) 338, 579, 666, 854, 1101, 1365
MboI GATC 6 cut(s) 336, 577, 664, 852, 1099, 1363
MflI RGATCY 2 cut(s) 336, 664
MhlI GDGCHC 4 cut(s) 415, 732, 1040, 1274
MlsI TGGCCA 1 cut(s) 594
MluCI AATT 1 cut(s) 467
MluNI TGGCCA 1 cut(s) 594
MlyI GAGTC 2 cut(s) 382, 450
MmeI TCCRAC 4 cut(s) 596, 1045, 1251, 1318
Mox20I TGGCCA 1 cut(s) 594
MscI TGGCCA 1 cut(s) 594
MseI TTAA 2 cut(s) 546, 1115
Msp20I TGGCCA 1 cut(s) 594
MspA1I CMGCKG 2 cut(s) 598, 1277
MspI CCGG 3 cut(s) 74, 321, 405
MspR9I CCNGG 1 cut(s) 75
MwoI GCNNNNNNNGC 9 cut(s) 591, 604, 702, 711, 884, 887, 890, 1127, 1185
NciI CCSGG 1 cut(s) 75
NdeII GATC 6 cut(s) 336, 577, 664, 852, 1099, 1363
NheI GCTAGC 1 cut(s) 893
NlaIII CATG 6 cut(s) 280, 445, 541, 664, 934, 1285
NlaIV GGNNCC 6 cut(s) 666, 697, 1037, 1038, 1069, 1145
PceI AGGCCT 1 cut(s) 688
PciSI GCTCTTC 2 cut(s) 403, 844
PcsI WCGNNNNNNNCGW 1 cut(s) 738
PfeI GAWTC 5 cut(s) 286, 635, 743, 946, 967
PfoI TCCNGGA 1 cut(s) 73
PleI GAGTC 2 cut(s) 382, 450
PpsI GAGTC 2 cut(s) 382, 450
Psp124BI GAGCTC 1 cut(s) 415
PspN4I GGNNCC 6 cut(s) 666, 697, 1037, 1038, 1069, 1145
PspOMI GGGCCC 1 cut(s) 1036
PspPI GGNCC 2 cut(s) 1036, 1037
PstI CTGCAG 2 cut(s) 694, 1132
PstNI CAGNNNCTG 1 cut(s) 366
PsuI RGATCY 2 cut(s) 336, 664
PvuII CAGCTG 1 cut(s) 598
RsaI GTAC 2 cut(s) 239, 780
RsaNI GTAC 2 cut(s) 238, 779
SacI GAGCTC 1 cut(s) 415
SapI GCTCTTC 2 cut(s) 403, 844
SaqAI TTAA 2 cut(s) 546, 1115
Sau3AI GATC 6 cut(s) 336, 577, 664, 852, 1099, 1363
Sau96I GGNCC 2 cut(s) 1036, 1037
SbfI CCTGCAGG 1 cut(s) 694
SchI GAGTC 2 cut(s) 382, 450
ScrFI CCNGG 1 cut(s) 75
SdaI CCTGCAGG 1 cut(s) 694
SduI GDGCHC 4 cut(s) 415, 732, 1040, 1274
SfaNI GCATC 1 cut(s) 877
SfcI CTRYAG 3 cut(s) 270, 690, 1128
SpeI ACTAGT 1 cut(s) 554
Sse8387I CCTGCAGG 1 cut(s) 694
Sse9I AATT 1 cut(s) 467
SseBI AGGCCT 1 cut(s) 688
SsiI CCGC 5 cut(s) 153, 705, 712, 891, 1275
SspMI CTAG 2 cut(s) 555, 894
SstI GAGCTC 1 cut(s) 415
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 3 cut(s) 195, 362, 1203
TaqI TCGA 5 cut(s) 289, 459, 717, 1077, 1332
TasI AATT 1 cut(s) 467
TauI GCSGC 2 cut(s) 708, 893
TfiI GAWTC 5 cut(s) 286, 635, 743, 946, 967
Tru1I TTAA 2 cut(s) 546, 1115
Tru9I TTAA 2 cut(s) 546, 1115
TscAI CASTG 1 cut(s) 1208
TspDTI ATGAA 7 cut(s) 395, 519, 938, 1038, 1212, 1298, 1374
TspGWI ACGGA 2 cut(s) 140, 1372
TspRI CASTG 1 cut(s) 1208
XagI CCTNNNNNAGG 1 cut(s) 682
XapI RAATTY 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 1198
XspI CTAG 2 cut(s) 555, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.