AT3G04310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010950
Physical Location & Seq
Reverse (-)
1141043 .. 1142652
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04310.1

Sequence Viewer

Length: 810 bp
ATGGCGAATCTGCTGTATCTTCAGCTTTCTTCTTGCGTCGTCAGAGGCAGATTCTGTTCTCTAAACTGCGATTTTGATCTCTGCCCAAATATCGTGAGCCGCGGTTCCTTTGATTGCCGCGCCTCCCGCGGTCCTAGCTGGGAGGAGGAGCTCTTCCGCGACGAAGGTTTTGCTTCGTTTGAGTTCGGAAACCGTAAAAAGAAGAGGCCTTGGTGGCTTGATGATGATGATGACGATGACGACAACGATGATTGGATGAATGAAGAAGAAGAAGACTGGTCTATGGTTTTTGAGGTATTTAGAACATTGAGTTGGATGCTTGCACCAATTGGCATATCTTTGCTTCTTGGAACAGATTCAAACGCGGGTGTAATGGCATTAGCAGTTCCTTTAGTGCAATCTGTGTTGTCTCTTGTGGTTAGTAAAGTTTGGAGCAGGCCAAGCATTAGGTCTATGAAAAGAAGTAGAAGAGATACATTTTCGAGATCTGCGAGTGTAAGTAGTGGAAGAACAAGGAAAGCTAGGCAAGGAGGAAACATGAGGGGTGGTGTAGATAAGGGAGGATACAAGTCATGGATAGTAGGAGATGATGATTCTAACAGCATGGGTACTGGCTATGGAGGATGGGATGATCTAGATACGCTAAGGGAGATTAGAAATGACAATCCATTAAACGAGAATGTTCGTCCAAAACAACAGTTTGAAAGAAAGGCTACTCGGCGGTGGAGAGTTAAGGAGAAGCCATTGCTCTTGAGGATGCTAATTGCTGCCTTCCCTTTTTTGGGTTCATGGACCAAATTGTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.81

Weight (kDa)

7.56

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33250 AT3G04310 AT3G04310
fragaria_vesca FvH4_4g05190 FvH4_4g05190
malus_domestica MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica Prupe.1G052600_v2.0.a1
pyrus_communis pycom16g19270
rosa_chinensis RchiOBHm_Chr4g0396101
rosa_laevigata RLG00000009572
rosa_multiflora Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii Rroxscaffold_5G00340900
rosa_rugosa Rorug03G0352600
rosa_samantha Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana Rw4G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 102, 120, 129, 159, 365
AciI CCGC 8 cut(s) 100, 102, 118, 127, 129, 157, 365, 721
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 1 cut(s) 610
AfiI CCNNNNNNNGG 2 cut(s) 781, 782
AgsI TTSAA 2 cut(s) 360, 704
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 4 cut(s) 25, 138, 151, 521
AluI AGCT 4 cut(s) 25, 138, 151, 521
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 414
AlwNI CAGNNNCTG 1 cut(s) 54
AoxI GGCC 2 cut(s) 206, 437
ApeKI GCWGC 1 cut(s) 767
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 131, 792
AvaII GGWCC 2 cut(s) 131, 792
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 754
BccI CCATC 1 cut(s) 618
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciVI GTATCC 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 3 cut(s) 135, 522, 635
BfuI GTATCC 1 cut(s) 557
BglI GCCNNNNNGGC 1 cut(s) 214
BglII AGATCT 1 cut(s) 485
BisI GCNGC 3 cut(s) 100, 118, 768
BlsI GCNGC 3 cut(s) 101, 119, 769
Bme18I GGWCC 2 cut(s) 131, 792
BmgT120I GGNCC 2 cut(s) 131, 792
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 2 cut(s) 306, 747
BpiI GAAGAC 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 772
BsaBI GATNNNNATC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 100, 127, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 781, 782
Bse1I ACTGG 2 cut(s) 281, 616
Bse3DI GCAATG 1 cut(s) 743
Bse8I GATNNNNATC 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 100, 127, 209
BseGI GGATG 5 cut(s) 261, 321, 629, 634, 762
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 781, 782
BseMI GCAATG 1 cut(s) 743
BseNI ACTGG 2 cut(s) 281, 616
BseRI GAGGAG 2 cut(s) 158, 161
BseXI GCAGC 1 cut(s) 754
BseYI CCCAGC 1 cut(s) 138
Bsh1236I CGCG 5 cut(s) 102, 120, 129, 159, 365
BshFI GGCC 2 cut(s) 208, 439
BsiHKAI GWGCWC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 781, 782
BsmAI GTCTC 1 cut(s) 414
BsnI GGCC 2 cut(s) 208, 439
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 76, 485, 631
BspACI CCGC 8 cut(s) 100, 102, 118, 127, 129, 157, 365, 721
BspANI GGCC 2 cut(s) 208, 439
BspFNI CGCG 5 cut(s) 102, 120, 129, 159, 365
BspLI GGNNCC 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 743
BsrI ACTGG 2 cut(s) 281, 616
BssECI CCNNGG 3 cut(s) 100, 127, 209
BssMI GATC 3 cut(s) 76, 485, 631
BssT1I CCWWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 194, 699
Bst6I CTCTTC 3 cut(s) 158, 197, 463
BstC8I GCNNGC 2 cut(s) 321, 437
BstDEI CTNAG 1 cut(s) 644
BstDSI CCRYGG 2 cut(s) 100, 127
BstF5I GGATG 5 cut(s) 261, 321, 629, 634, 762
BstFNI CGCG 5 cut(s) 102, 120, 129, 159, 365
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 3 cut(s) 79, 488, 634
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 3 cut(s) 76, 485, 631
BstMWI GCNNNNNNNGC 4 cut(s) 126, 135, 214, 441
BstUI CGCG 5 cut(s) 102, 120, 129, 159, 365
BstV1I GCAGC 1 cut(s) 754
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 2 cut(s) 208, 439
BtgI CCRYGG 2 cut(s) 100, 127
BtsCI GGATG 5 cut(s) 261, 321, 629, 634, 762
Cac8I GCNNGC 2 cut(s) 321, 437
CaiI CAGNNNCTG 1 cut(s) 54
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 131, 792
Cfr42I CCGCGG 2 cut(s) 103, 130
CseI GACGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 609
CviAII CATG 4 cut(s) 538, 573, 604, 789
CviQI GTAC 1 cut(s) 609
DdeI CTNAG 1 cut(s) 644
DpnI GATC 3 cut(s) 78, 487, 633
DpnII GATC 3 cut(s) 76, 485, 631
Eam1104I CTCTTC 3 cut(s) 158, 197, 463
EarI CTCTTC 3 cut(s) 158, 197, 463
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 209
Eco147I AGGCCT 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 131, 792
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 5
EcoICRI GAGCTC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 4 cut(s) 541, 576, 607, 792
FaiI YATR 8 cut(s) 284, 335, 455, 539, 574, 605, 618, 790
FatI CATG 4 cut(s) 537, 572, 603, 788
FauI CCCGC 2 cut(s) 134, 358
Fnu4HI GCNGC 3 cut(s) 100, 118, 768
FokI GGATG 5 cut(s) 268, 328, 636, 641, 769
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 100, 118, 768
FspBI CTAG 3 cut(s) 135, 522, 635
GlaI GCGC 1 cut(s) 121
GluI GCNGC 3 cut(s) 100, 118, 768
GsaI CCCAGC 1 cut(s) 142
HaeIII GGCC 2 cut(s) 208, 439
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 122
Hin1II CATG 4 cut(s) 541, 576, 607, 792
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 4 cut(s) 7, 51, 356, 593
Hpy188I TCNGA 2 cut(s) 44, 188
Hpy188III TCNNGA 4 cut(s) 94, 483, 635, 751
Hpy99I CGWCG 2 cut(s) 41, 164
HpyAV CCTTC 2 cut(s) 158, 781
HpyCH4III ACNGT 2 cut(s) 194, 699
HpyCH4V TGCA 2 cut(s) 323, 397
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 135, 214, 441
HpyF3I CTNAG 1 cut(s) 644
Hsp92II CATG 4 cut(s) 541, 576, 607, 792
HspAI GCGC 1 cut(s) 120
KspI CCGCGG 2 cut(s) 103, 130
Kzo9I GATC 3 cut(s) 76, 485, 631
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 148, 432
LpnPI CCDG 4 cut(s) 124, 262, 421, 597
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 2 cut(s) 306, 747
MaeI CTAG 3 cut(s) 135, 522, 635
MalI GATC 3 cut(s) 78, 487, 633
MboI GATC 3 cut(s) 76, 485, 631
MfeI CAATTG 1 cut(s) 327
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 327, 762, 797
MmeI TCCRAC 1 cut(s) 293
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 2 cut(s) 671, 732
MspA1I CMGCKG 2 cut(s) 102, 129
MunI CAATTG 1 cut(s) 327
MvnI CGCG 5 cut(s) 102, 120, 129, 159, 365
MwoI GCNNNNNNNGC 4 cut(s) 126, 135, 214, 441
NdeII GATC 3 cut(s) 76, 485, 631
NlaIII CATG 4 cut(s) 541, 576, 607, 792
NlaIV GGNNCC 1 cut(s) 106
NmeAIII GCCGAG 1 cut(s) 697
PceI AGGCCT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 4 cut(s) 7, 51, 356, 593
PkrI GCNGC 3 cut(s) 101, 119, 769
Psp124BI GAGCTC 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 131, 792
PstNI CAGNNNCTG 1 cut(s) 54
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 1 cut(s) 610
RsaNI GTAC 1 cut(s) 609
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 2 cut(s) 103, 130
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 671, 732
SatI GCNGC 3 cut(s) 100, 118, 768
Sau3AI GATC 3 cut(s) 76, 485, 631
Sau96I GGNCC 2 cut(s) 131, 792
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 27, 140, 153, 169, 297, 452, 523
SfaNI GCATC 2 cut(s) 306, 747
Sfr303I CCGCGG 2 cut(s) 103, 130
SgrBI CCGCGG 2 cut(s) 103, 130
SinI GGWCC 2 cut(s) 131, 792
SmlI CTYRAG 1 cut(s) 751
SmoI CTYRAG 1 cut(s) 751
Sse9I AATT 3 cut(s) 327, 762, 797
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 8 cut(s) 100, 102, 118, 127, 129, 157, 365, 721
SspMI CTAG 3 cut(s) 135, 522, 635
SstI GAGCTC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 208
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 194, 699
TaqI TCGA 1 cut(s) 482
TasI AATT 3 cut(s) 327, 762, 797
TauI GCSGC 2 cut(s) 102, 120
TfiI GAWTC 4 cut(s) 7, 51, 356, 593
Tru1I TTAA 2 cut(s) 671, 732
Tru9I TTAA 2 cut(s) 671, 732
TseI GCWGC 1 cut(s) 767
TspDTI ATGAA 4 cut(s) 272, 276, 470, 777
VpaK11BI GGWCC 2 cut(s) 131, 792
XbaI TCTAGA 1 cut(s) 634
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 3 cut(s) 135, 522, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.