Rh4CG070800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010950
Physical Location & Seq
Reverse (-)
13070056 .. 13073212
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG070800.1

Sequence Viewer

Length: 891 bp
ATGGAGAGCAGTGTCCTGGTCCTCACACACCCTCATCCATGGCGACCCAGATATTCCCTTCACTCTCTTTTTCAAAACCCACGTCCTCCTTCCTCTCATCTACTTCGCTCTTATGCTACTAAGTACCGCCGCTGGGATTCCAATGCCGAAACCATTCGCTCTAAAACATTCGGTTTTAGTTTCAGAGACAGACGAAACGGAGATGAAGAAGATGACGATGACTATGAGGAAGAAGATGATTATGGTTACAATACAAGTAAAGGGAAGAAGAAGAAGAAGAAGAATAAGAGGCGGTGGTGGTCAGATGGGCCCTCTGAGATGGAGGAAAAACGTGTTGGAGTCTTGGAGGAAGCCATTGACAGTGTCTGGATTTTCAAGGTGTTCAGATCTTATGGTTGGACATTACCATTTATTGTCATATCTCTGCTGCTATCTACGGGTCCAAAAGCTTTCCTCATGGCATTAGCACTTCCCCTTGGTCAGTCAGCCCTTTCACTGGCAATTGAGAAGTTATGGGGAAGGACGCAAAAAAGGCCAAAACGCAAGTCCAGGATGAGAAGGAAACCATCTGCCACCAGTGAAGCTAATGTTAAAATGGACGAAGAAGAAACATATGATGAAGATCAGGAAACTAATAATAAAAAGATGGATTACCAATCTTGGGTTGTTGGGAATGATGTTTCAGTTGGTAATAGTGGCGAAGATGCGTCAAAATTAGGTGGATGGGATGATCTTGAAAGAATGGAATCTGAAAAGAGGCAATCTCGAAGAAAATCTAGAGGGACGGGTAAGTTGAGTCGGAGAGAAAGAATTAGTGATACACCTCTTCTGCTGAGGTTGTTGATTGCAGTTTTCCCTTTTTTGGGTTCATGGACAAAGATATTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

34.6

Weight (kDa)

9.6

Isoelectric Point (pI)

65.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33250 AT3G04310 AT3G04310
fragaria_vesca FvH4_4g05190 FvH4_4g05190
malus_domestica MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica Prupe.1G052600_v2.0.a1
pyrus_communis pycom16g19270
rosa_chinensis RchiOBHm_Chr4g0396101
rosa_laevigata RLG00000009572
rosa_multiflora Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii Rroxscaffold_5G00340900
rosa_rugosa Rorug03G0352600
rosa_samantha Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana Rw4G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 127, 130, 292
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 5 cut(s) 133, 496, 661, 862, 863
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 3 cut(s) 74, 376, 737
AjiI CACGTC 1 cut(s) 83
AjnI CCWGG 2 cut(s) 15, 548
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 2 cut(s) 449, 584
AluI AGCT 2 cut(s) 449, 584
Alw26I GTCTC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 366
AoxI GGCC 2 cut(s) 308, 533
ApaI GGGCCC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 427
ArsI GACNNNNNNTTYG 4 cut(s) 67, 99, 530, 562
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 4 cut(s) 19, 308, 309, 440
AvaII GGWCC 2 cut(s) 19, 440
BaeGI GKGCMC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 833
BbvI GCAGC 1 cut(s) 414
BccI CCATC 5 cut(s) 299, 313, 574, 640, 717
BciT130I CCWGG 2 cut(s) 17, 550
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 777
BglII AGATCT 1 cut(s) 386
BisI GCNGC 2 cut(s) 130, 428
BlsI GCNGC 2 cut(s) 131, 429
Bme1390I CCNGG 2 cut(s) 17, 550
Bme18I GGWCC 2 cut(s) 19, 440
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 4 cut(s) 19, 308, 309, 440
BmiI GGNNCC 2 cut(s) 310, 441
BmrFI CCNGG 2 cut(s) 17, 550
BmsI GCATC 1 cut(s) 694
BplI GAGNNNNNCTC 2 cut(s) 748, 780
Bpu10I CCTNAGC 1 cut(s) 833
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 38, 475
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 496, 661, 862, 863
Bse1I ACTGG 2 cut(s) 501, 576
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 2 cut(s) 17, 550
BseDI CCNNGG 2 cut(s) 38, 475
BseGI GGATG 4 cut(s) 34, 558, 728, 733
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 5 cut(s) 133, 496, 661, 862, 863
BseMII CTCAG 2 cut(s) 306, 824
BseNI ACTGG 2 cut(s) 501, 576
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 1 cut(s) 414
BseYI CCCAGC 1 cut(s) 132
BshFI GGCC 2 cut(s) 310, 535
BslFI GGGAC 1 cut(s) 796
BslI CCNNNNNNNGG 5 cut(s) 133, 496, 661, 862, 863
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 796
BsnI GGCC 2 cut(s) 310, 535
Bsp120I GGGCCC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 386, 622, 730
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 3 cut(s) 127, 130, 292
BspANI GGCC 2 cut(s) 310, 535
BspCNI CTCAG 2 cut(s) 307, 825
BspLI GGNNCC 2 cut(s) 310, 441
BsrI ACTGG 2 cut(s) 501, 576
BssECI CCNNGG 2 cut(s) 38, 475
BssMI GATC 3 cut(s) 386, 622, 730
BssT1I CCWWGG 2 cut(s) 38, 475
Bst2UI CCWGG 2 cut(s) 17, 550
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 831
BstDEI CTNAG 3 cut(s) 120, 315, 833
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 4 cut(s) 34, 558, 728, 733
BstKTI GATC 3 cut(s) 389, 625, 733
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 386, 622, 730
BstMWI GCNNNNNNNGC 1 cut(s) 532
BstNI CCWGG 2 cut(s) 17, 550
BstSCI CCNGG 2 cut(s) 15, 548
BstSLI GKGCMC 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 2 cut(s) 310, 535
BtgI CCRYGG 1 cut(s) 38
BtrI CACGTC 1 cut(s) 83
BtsCI GGATG 4 cut(s) 34, 558, 728, 733
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 4 cut(s) 16, 367, 494, 583
CaiI CAGNNNCTG 1 cut(s) 366
Cfr13I GGNCC 4 cut(s) 19, 308, 309, 440
CseI GACGC 2 cut(s) 532, 696
Csp6I GTAC 1 cut(s) 124
CviAII CATG 3 cut(s) 39, 457, 870
CviJI RGCY 6 cut(s) 310, 353, 449, 488, 535, 584
CviKI_1 RGCY 6 cut(s) 310, 353, 449, 488, 535, 584
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 3 cut(s) 120, 315, 833
DpnI GATC 3 cut(s) 388, 624, 732
DpnII GATC 3 cut(s) 386, 622, 730
Eam1104I CTCTTC 1 cut(s) 831
EarI CTCTTC 1 cut(s) 831
Eco130I CCWWGG 2 cut(s) 38, 475
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 19, 440
EcoO109I RGGNCCY 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 15, 548
EcoT14I CCWWGG 2 cut(s) 38, 475
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 2 cut(s) 38, 475
FaeI CATG 3 cut(s) 42, 460, 873
FaqI GGGAC 1 cut(s) 796
FatI CATG 3 cut(s) 38, 456, 869
FauNDI CATATG 1 cut(s) 613
Fnu4HI GCNGC 2 cut(s) 130, 428
FokI GGATG 4 cut(s) 21, 565, 735, 740
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 2 cut(s) 130, 428
FspBI CTAG 1 cut(s) 777
GluI GCNGC 2 cut(s) 130, 428
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 2 cut(s) 310, 535
HgaI GACGC 2 cut(s) 532, 696
Hin1II CATG 3 cut(s) 42, 460, 873
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 4 cut(s) 137, 339, 746, 796
Hpy188I TCNGA 6 cut(s) 185, 304, 316, 386, 751, 801
Hpy188III TCNNGA 5 cut(s) 367, 626, 734, 765, 777
HpyAV CCTTC 4 cut(s) 68, 99, 513, 552
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 2 cut(s) 82, 331
HpyCH4V TGCA 1 cut(s) 848
HpyF10VI GCNNNNNNNGC 1 cut(s) 532
HpyF3I CTNAG 3 cut(s) 120, 315, 833
HpySE526I ACGT 2 cut(s) 82, 331
Hsp92II CATG 3 cut(s) 42, 460, 873
Kzo9I GATC 3 cut(s) 386, 622, 730
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 1 cut(s) 694
MaeI CTAG 1 cut(s) 777
MaeII ACGT 2 cut(s) 82, 331
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 388, 624, 732
MboI GATC 3 cut(s) 386, 622, 730
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 3 cut(s) 501, 713, 810
MlyI GAGTC 2 cut(s) 348, 805
MmeI TCCRAC 3 cut(s) 316, 377, 779
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 17, 550
MunI CAATTG 1 cut(s) 501
MvaI CCWGG 2 cut(s) 17, 550
MwoI GCNNNNNNNGC 1 cut(s) 532
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 613
NdeII GATC 3 cut(s) 386, 622, 730
NlaIII CATG 3 cut(s) 42, 460, 873
NlaIV GGNNCC 2 cut(s) 310, 441
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 137, 746
PflFI GACNNNGTC 1 cut(s) 362
PfoI TCCNGGA 1 cut(s) 548
PkrI GCNGC 2 cut(s) 131, 429
PleI GAGTC 2 cut(s) 347, 804
PpsI GAGTC 2 cut(s) 347, 804
Psp6I CCWGG 2 cut(s) 15, 548
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 2 cut(s) 15, 548
PspN4I GGNNCC 2 cut(s) 310, 441
PspOMI GGGCCC 1 cut(s) 308
PspPI GGNCC 4 cut(s) 19, 308, 309, 440
PstNI CAGNNNCTG 1 cut(s) 366
PsuI RGATCY 1 cut(s) 386
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 2 cut(s) 130, 428
Sau3AI GATC 3 cut(s) 386, 622, 730
Sau96I GGNCC 4 cut(s) 19, 308, 309, 440
SchI GAGTC 2 cut(s) 348, 805
ScrFI CCNGG 2 cut(s) 17, 550
SduI GDGCHC 1 cut(s) 312
SetI ASST 8 cut(s) 85, 334, 381, 451, 586, 721, 826, 839
SfaNI GCATC 1 cut(s) 694
SinI GGWCC 2 cut(s) 19, 440
Sse9I AATT 3 cut(s) 501, 713, 810
SsiI CCGC 3 cut(s) 127, 130, 292
SspMI CTAG 1 cut(s) 777
StyD4I CCNGG 2 cut(s) 15, 548
StyI CCWWGG 2 cut(s) 38, 475
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 2 cut(s) 85, 334
TaqI TCGA 1 cut(s) 766
TasI AATT 3 cut(s) 501, 713, 810
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 2 cut(s) 137, 746
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 4 cut(s) 16, 367, 501, 583
TseI GCWGC 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 219, 633, 858
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 4 cut(s) 16, 367, 501, 583
Tth111I GACNNNGTC 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 19, 440
XbaI TCTAGA 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.