RLG00000009572

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010950
Physical Location & Seq
Forward (+)
54775159 .. 54777236
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009572

Sequence Viewer

Length: 861 bp
ATGGAGAGCAGTGTCCTGGTCCTCACACACCCTCATCCATGGCGACCCAGATATTCCCTTCACTCTCTTTTTCAAAACCCACGTCCTCCTTCCTCTCATCTACTTCGCTCTTATACTACTAACTACCGCCGCTGGGATTCCAATGCCGAAACCATTCGCTCTAAAACATTCGGTTTTAGTTTCAGAGACAAACGAAACGAAGATGAAGATGAAGATGAAGATGATGACTATGGGGAGGAAGATGATTATGGTTACAATACAAGTAAAGGGAAGAAGAATAAGAGGCGGTGGTGGTCGGATGGGCCCTCTGAAATGGAGGAAGCCTTTGACAGTGTCTGGATTTTCAAGGTGTTCAGATCTTATGGTTGGACATTACCATTTATTGTCATATCTCTGCTGCTATCTACGGGTCCAAAAGCTTTCCTCATGGCATTAGCACTCCCCCTTGGTCAGTCAGTCCTTTCACTGGCAATTGAGAAGTTATGGGGAAGGACGCAAAAAAGGCCAAAACGCAAGTCCAGGATGAGAAGGAAACCATCTGCTACCAGTGAAGCTAATGTTAAAATGGACGAAGAAGAAACATATGATGAAGATCAGGAAACTAATAATAAAAAGATGGATTACCAATCTTGGGTTGTTGGGAATGATGTTTCAGTTGGTAATAGTGGCGGAGATGCGTCAAAGTTGGGTGGATGGGATGATCTTGAAAGAATGGAATCTGAAAAGAGGCAATCTCGAAGAAAGTCTAGAGGGAAGGGTAAGTTGAGTCGGAGAGAAAGAATTAGTGATACACCTCTTCTACTGAGGTTGTTGATTGCAGTTTTCCCTTTTTTGGGTTCATGGACAAAGATATTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

33.42

Weight (kDa)

9.28

Isoelectric Point (pI)

63.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33250 AT3G04310 AT3G04310
fragaria_vesca FvH4_4g05190 FvH4_4g05190
malus_domestica MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica Prupe.1G052600_v2.0.a1
pyrus_communis pycom16g19270
rosa_chinensis RchiOBHm_Chr4g0396101
rosa_laevigata RLG00000009572
rosa_multiflora Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii Rroxscaffold_5G00340900
rosa_rugosa Rorug03G0352600
rosa_samantha Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana Rw4G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 127, 130, 286, 669
AfiI CCNNNNNNNGG 5 cut(s) 133, 466, 631, 832, 833
AgsI TTSAA 3 cut(s) 74, 346, 707
AjiI CACGTC 1 cut(s) 83
AjnI CCWGG 2 cut(s) 15, 518
AluBI AGCT 2 cut(s) 419, 554
AluI AGCT 2 cut(s) 419, 554
Alw26I GTCTC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 336
AoxI GGCC 2 cut(s) 302, 503
ApaI GGGCCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 397
ArsI GACNNNNNNTTYG 4 cut(s) 67, 99, 500, 532
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 4 cut(s) 19, 302, 303, 410
AvaII GGWCC 2 cut(s) 19, 410
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 384
BccI CCATC 4 cut(s) 293, 544, 610, 687
BciT130I CCWGG 2 cut(s) 17, 520
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 747
BglII AGATCT 1 cut(s) 356
BisI GCNGC 2 cut(s) 130, 398
BlsI GCNGC 2 cut(s) 131, 399
Bme1390I CCNGG 2 cut(s) 17, 520
Bme18I GGWCC 2 cut(s) 19, 410
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 4 cut(s) 19, 302, 303, 410
BmiI GGNNCC 2 cut(s) 304, 411
BmrFI CCNGG 2 cut(s) 17, 520
BmsI GCATC 1 cut(s) 664
BplI GAGNNNNNCTC 2 cut(s) 718, 750
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 2 cut(s) 38, 445
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 466, 631, 832, 833
Bse1I ACTGG 2 cut(s) 471, 546
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 2 cut(s) 17, 520
BseDI CCNNGG 2 cut(s) 38, 445
BseGI GGATG 5 cut(s) 34, 304, 528, 698, 703
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 5 cut(s) 133, 466, 631, 832, 833
BseMII CTCAG 1 cut(s) 794
BseNI ACTGG 2 cut(s) 471, 546
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 384
BseYI CCCAGC 1 cut(s) 132
BshFI GGCC 2 cut(s) 304, 505
BslI CCNNNNNNNGG 5 cut(s) 133, 466, 631, 832, 833
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 2 cut(s) 304, 505
Bsp120I GGGCCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 356, 592, 700
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 4 cut(s) 127, 130, 286, 669
BspANI GGCC 2 cut(s) 304, 505
BspCNI CTCAG 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 304, 411
BsrI ACTGG 2 cut(s) 471, 546
BssECI CCNNGG 2 cut(s) 38, 445
BssMI GATC 3 cut(s) 356, 592, 700
BssT1I CCWWGG 2 cut(s) 38, 445
Bst2UI CCWGG 2 cut(s) 17, 520
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 801
BstDEI CTNAG 1 cut(s) 803
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 5 cut(s) 34, 304, 528, 698, 703
BstKTI GATC 3 cut(s) 359, 595, 703
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 356, 592, 700
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstNI CCWGG 2 cut(s) 17, 520
BstSCI CCNGG 2 cut(s) 15, 518
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 2 cut(s) 304, 505
BtgI CCRYGG 1 cut(s) 38
BtrI CACGTC 1 cut(s) 83
BtsCI GGATG 5 cut(s) 34, 304, 528, 698, 703
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 4 cut(s) 16, 337, 464, 553
CaiI CAGNNNCTG 1 cut(s) 336
Cfr13I GGNCC 4 cut(s) 19, 302, 303, 410
CseI GACGC 2 cut(s) 502, 666
CviAII CATG 3 cut(s) 39, 427, 840
CviJI RGCY 5 cut(s) 304, 323, 419, 505, 554
CviKI_1 RGCY 5 cut(s) 304, 323, 419, 505, 554
DdeI CTNAG 1 cut(s) 803
DpnI GATC 3 cut(s) 358, 594, 702
DpnII GATC 3 cut(s) 356, 592, 700
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
EciI GGCGGA 1 cut(s) 684
Eco130I CCWWGG 2 cut(s) 38, 445
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 2 cut(s) 19, 410
EcoO109I RGGNCCY 1 cut(s) 303
EcoRII CCWGG 2 cut(s) 15, 518
EcoT14I CCWWGG 2 cut(s) 38, 445
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 2 cut(s) 38, 445
FaeI CATG 3 cut(s) 42, 430, 843
FatI CATG 3 cut(s) 38, 426, 839
FauNDI CATATG 1 cut(s) 583
Fnu4HI GCNGC 2 cut(s) 130, 398
FokI GGATG 5 cut(s) 21, 311, 535, 705, 710
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 130, 398
FspBI CTAG 1 cut(s) 747
GluI GCNGC 2 cut(s) 130, 398
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 2 cut(s) 304, 505
HgaI GACGC 2 cut(s) 502, 666
Hin1II CATG 3 cut(s) 42, 430, 843
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 3 cut(s) 137, 716, 766
Hpy188I TCNGA 6 cut(s) 185, 298, 310, 356, 721, 771
Hpy188III TCNNGA 5 cut(s) 337, 596, 704, 735, 747
HpyAV CCTTC 5 cut(s) 68, 99, 483, 522, 748
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 1 cut(s) 803
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 3 cut(s) 42, 430, 843
Kzo9I GATC 3 cut(s) 356, 592, 700
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 664
MaeI CTAG 1 cut(s) 747
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 358, 594, 702
MboI GATC 3 cut(s) 356, 592, 700
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 2 cut(s) 471, 780
MlyI GAGTC 1 cut(s) 775
MmeI TCCRAC 3 cut(s) 276, 347, 749
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 17, 520
MunI CAATTG 1 cut(s) 471
MvaI CCWGG 2 cut(s) 17, 520
MwoI GCNNNNNNNGC 1 cut(s) 502
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 583
NdeII GATC 3 cut(s) 356, 592, 700
NlaIII CATG 3 cut(s) 42, 430, 843
NlaIV GGNNCC 2 cut(s) 304, 411
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 137, 716
PflFI GACNNNGTC 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 518
PkrI GCNGC 2 cut(s) 131, 399
PleI GAGTC 1 cut(s) 774
PpsI GAGTC 1 cut(s) 774
Psp6I CCWGG 2 cut(s) 15, 518
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 2 cut(s) 15, 518
PspN4I GGNNCC 2 cut(s) 304, 411
PspOMI GGGCCC 1 cut(s) 302
PspPI GGNCC 4 cut(s) 19, 302, 303, 410
PstNI CAGNNNCTG 1 cut(s) 336
PsuI RGATCY 1 cut(s) 356
PsyI GACNNNGTC 1 cut(s) 332
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 2 cut(s) 130, 398
Sau3AI GATC 3 cut(s) 356, 592, 700
Sau96I GGNCC 4 cut(s) 19, 302, 303, 410
SchI GAGTC 1 cut(s) 775
ScrFI CCNGG 2 cut(s) 17, 520
SduI GDGCHC 1 cut(s) 306
SetI ASST 6 cut(s) 85, 351, 421, 556, 796, 809
SfaNI GCATC 1 cut(s) 664
SinI GGWCC 2 cut(s) 19, 410
Sse9I AATT 2 cut(s) 471, 780
SsiI CCGC 4 cut(s) 127, 130, 286, 669
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 2 cut(s) 15, 518
StyI CCWWGG 2 cut(s) 38, 445
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 736
TasI AATT 2 cut(s) 471, 780
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 2 cut(s) 137, 716
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 4 cut(s) 16, 337, 471, 553
TseI GCWGC 1 cut(s) 397
TspDTI ATGAA 5 cut(s) 219, 225, 231, 603, 828
TspRI CASTG 4 cut(s) 16, 337, 471, 553
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 2 cut(s) 19, 410
XbaI TCTAGA 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.