RchiOBHm_Chr4g0396101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010950
Physical Location & Seq
Reverse (-)
12126100 .. 12126665
566 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36847

Sequence Viewer

Length: 540 bp
ATGGAGAGCGGTGTCCTGGTCCTCACACACCCTCATCCATGGCGACCCAGATATTCCCTTCACTCTCTTTTTCAAAATCCACGTCCTCCTTCCTCTCATCTACTTCGCTCTTATACTACTAAGTACCGCCGCTGGGATTCCAATGCCGAAACCATTCGCTCTAAAACATTCGGTTTTAGTTTCAGAGACAGACGAAACGGAGATGAAGATGAAGAAGAAGATGACGATGACTATGAGGAAGAAGATGATTATGGTTACAATACAAGTAAAGGGAAGAAGAAGAAGAATAAGAGGCGGTGGTGGTCAGATGGGCCCTCTGAGATGGAGGAAAAACCTGTTGGAGTCTTGGAGGAAGCCATTGACAGTGTCTGGATTTTCAAGGTGATAATTTTCACTTCTCCTTTGCTTGTTTCTACAAATTTGGGATTTGGGATTGTTGCAATTTCTTGGCTTTTTGCTCAACTTGGTATGTGTTTAAAGATTTTGGTTGGGTTTTGTTACTTTTTCAAGTGTGACTTACACATTGCAACAGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.94

Weight (kDa)

6.22

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33250 AT3G04310 AT3G04310
fragaria_vesca FvH4_4g05190 FvH4_4g05190
malus_domestica MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica Prupe.1G052600_v2.0.a1
pyrus_communis pycom16g19270
rosa_chinensis RchiOBHm_Chr4g0396101
rosa_laevigata RLG00000009572
rosa_multiflora Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii Rroxscaffold_5G00340900
rosa_rugosa Rorug03G0352600
rosa_samantha Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana Rw4G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AciI CCGC 4 cut(s) 9, 127, 130, 295
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 3 cut(s) 74, 379, 508
AjiI CACGTC 1 cut(s) 83
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
Alw26I GTCTC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 369
AoxI GGCC 1 cut(s) 311
ApaI GGGCCC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 3 cut(s) 19, 311, 312
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 315
BccI CCATC 2 cut(s) 302, 316
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 180
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 19, 311, 312
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 1 cut(s) 309
BseSI GKGCMC 1 cut(s) 315
BseYI CCCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 313
Bsp120I GGGCCC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 4 cut(s) 9, 127, 130, 295
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 313
BsrBI CCGCTC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 522
BssECI CCNNGG 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 365, 532
BstDEI CTNAG 2 cut(s) 120, 318
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 313
BtgI CCRYGG 1 cut(s) 38
BtrI CACGTC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 370, 537
CaiI CAGNNNCTG 1 cut(s) 369
Cfr13I GGNCC 3 cut(s) 19, 311, 312
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 39
CviJI RGCY 3 cut(s) 313, 356, 451
CviKI_1 RGCY 3 cut(s) 313, 356, 451
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 120, 318
DraI TTTAAA 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 42
FaiI YATR 5 cut(s) 40, 114, 234, 252, 470
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 313
Hin1II CATG 1 cut(s) 42
HinfI GANTC 2 cut(s) 137, 342
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 3 cut(s) 185, 307, 319
Hpy188III TCNNGA 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 68, 99
HpyCH4III ACNGT 2 cut(s) 365, 532
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 440, 527
HpyF3I CTNAG 2 cut(s) 120, 318
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 42
LpnPI CCDG 6 cut(s) 2, 29, 61, 118, 348, 355
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 3 cut(s) 254, 497, 512
MbiI CCGCTC 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 3 cut(s) 387, 418, 441
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 9 cut(s) 32, 42, 96, 103, 229, 285, 319, 325, 343
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 476
MspA1I CMGCKG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 38
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 512
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 137
PflFI GACNNNGTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 313
PspOMI GGGCCC 1 cut(s) 311
PspPI GGNCC 3 cut(s) 19, 311, 312
PstNI CAGNNNCTG 1 cut(s) 369
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 1 cut(s) 130
Sau96I GGNCC 3 cut(s) 19, 311, 312
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 315
SetI ASST 3 cut(s) 85, 337, 384
SinI GGWCC 1 cut(s) 19
Sse9I AATT 3 cut(s) 387, 418, 441
SsiI CCGC 4 cut(s) 9, 127, 130, 295
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 365, 532
TaiI ACGT 1 cut(s) 85
TasI AATT 3 cut(s) 387, 418, 441
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 2 cut(s) 370, 537
TseFI GTSAC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 2 cut(s) 219, 225
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 2 cut(s) 370, 537
Tth111I GACNNNGTC 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.