Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007010.1

Orthogroup ID

OG0010950

Physical Location & Seq

Genomic Coordinates Forward (+)

57875 .. 60716

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007010.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atggagagcagtgtcctggtcctcacacaccctcatccatggcgacccagatattcccttcactctctttttcaaaacccacgtcctccttcctctcatctacttcgctcttatgctactaagtaccgccgctgggattccaatgccgaaaccattcgctctaaaacattcggttttagtttcagagacagacgaaacggagatgaagatgaagaagatgatgactatgaggaagaagatgattatggttacaatacaagtaaagggaagaagaagaagaagaataagaggcggtggtggtcagatgggccctctgagatggaggaaaaacctgttggagtcttggaggaagccattgacagtgtctggattttcaaggtgataattttcacttctcctttgcttgtttctacaaatttgggatttgggattgctgcaatttcttggctttttgctcaacttggtatgtgtttaaagattttggtcggggacggagatgaagaagatgacgatgactatgaggaagaagatgattatggttacaatacaagtaaagggaagaagaagaagaagaataagaggcggtggtggtcagatgggccctctgagatggaggaaaaacctgttggagtcttggaggaagccattgacagtgtctggattttcaaggtgttcagatcttatggttggacattaccatttattgtcatatctctgctgctatctacgggtccaaaagctttcctcatggcattagcacttccccttggtcagtcagccctttcactggcaattgagaagttatggggaaggacgcaaaaaaggccaaaacgcaagtccaggatgagaaggaaaccatctgccaccagtgaagctaatgttaaaatggacgaagaagaaacatatgatgaagatcaggaaactaataataaaaagatggattaccaatcttgggttgttgggaatgatgtttcagttggtaatagtggcgaagatgcgtcaaaattaggtggatgggatgatcttgaaagaatggaatctgaaaagaggcaatctcgaagaaagtctagagggaagggtaagttgagtcggagagaaagaattagtgatacacctcttctgctgaggttgttgattgcagttttcccttttttgggttcatggacaaagatattttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

45.55

Weight (kDa)

7.68

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33250 AT3G04310 AT3G04310
fragaria_vesca	FvH4_4g05190 FvH4_4g05190
malus_domestica	MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica	Prupe.1G052600_v2.0.a1
pyrus_communis	pycom16g19270
rosa_chinensis	RchiOBHm_Chr4g0396101
rosa_laevigata	RLG00000009572
rosa_multiflora	Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii	Rroxscaffold_5G00340900
rosa_rugosa	Rorug03G0352600
rosa_samantha	Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana	Rw4G005330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	127, 130, 292, 583
AcsI	RAATTY	1 cut(s)	415
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	5 cut(s)	133, 787, 952, 1153, 1154
AgsI	TTSAA	4 cut(s)	74, 376, 667, 1028
AjiI	CACGTC	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	15, 839
AjuI	GAANNNNNNNTTGG	4 cut(s)	318, 350, 609, 641
AluBI	AGCT	2 cut(s)	740, 875
AluI	AGCT	2 cut(s)	740, 875
Alw26I	GTCTC	1 cut(s)	180
AlwNI	CAGNNNCTG	2 cut(s)	366, 657
AoxI	GGCC	3 cut(s)	308, 599, 824
ApaI	GGGCCC	2 cut(s)	312, 603
ApeKI	GCWGC	2 cut(s)	434, 718
ApoI	RAATTY	1 cut(s)	415
ArsI	GACNNNNNNTTYG	4 cut(s)	67, 99, 821, 853
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	6 cut(s)	19, 308, 309, 599, 600, 731
AsuHPI	GGTGA	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	19, 731
BaeGI	GKGCMC	2 cut(s)	312, 603
BanII	GRGCYC	2 cut(s)	312, 603
BbvCI	CCTCAGC	1 cut(s)	1124
BbvI	GCAGC	2 cut(s)	421, 705
BccI	CCATC	7 cut(s)	299, 313, 590, 604, 865, 931, 1008
BciT130I	CCWGG	2 cut(s)	17, 841
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	1068
BglII	AGATCT	1 cut(s)	677
BisI	GCNGC	3 cut(s)	130, 435, 719
BlsI	GCNGC	3 cut(s)	131, 436, 720
Bme1390I	CCNGG	2 cut(s)	17, 841
Bme18I	GGWCC	2 cut(s)	19, 731
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	6 cut(s)	19, 308, 309, 599, 600, 731
BmiI	GGNNCC	3 cut(s)	310, 601, 732
BmrFI	CCNGG	2 cut(s)	17, 841
BmsI	GCATC	1 cut(s)	985
BplI	GAGNNNNNCTC	2 cut(s)	1039, 1071
Bpu10I	CCTNAGC	1 cut(s)	1124
BsaBI	GATNNNNATC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	38, 766
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 787, 952, 1153, 1154
Bse1I	ACTGG	2 cut(s)	792, 867
Bse8I	GATNNNNATC	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	17, 841
BseDI	CCNNGG	2 cut(s)	38, 766
BseGI	GGATG	4 cut(s)	34, 849, 1019, 1024
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	5 cut(s)	133, 787, 952, 1153, 1154
BseMII	CTCAG	3 cut(s)	306, 597, 1115
BseNI	ACTGG	2 cut(s)	792, 867
BseSI	GKGCMC	2 cut(s)	312, 603
BseXI	GCAGC	2 cut(s)	421, 705
BseYI	CCCAGC	1 cut(s)	132
BshFI	GGCC	3 cut(s)	310, 601, 826
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	5 cut(s)	133, 787, 952, 1153, 1154
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	3 cut(s)	310, 601, 826
Bsp120I	GGGCCC	2 cut(s)	308, 599
Bsp1286I	GDGCHC	2 cut(s)	312, 603
Bsp143I	GATC	3 cut(s)	677, 913, 1021
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	4 cut(s)	127, 130, 292, 583
BspANI	GGCC	3 cut(s)	310, 601, 826
BspCNI	CTCAG	3 cut(s)	307, 598, 1116
BspLI	GGNNCC	3 cut(s)	310, 601, 732
BsrI	ACTGG	2 cut(s)	792, 867
BssECI	CCNNGG	2 cut(s)	38, 766
BssMI	GATC	3 cut(s)	677, 913, 1021
BssT1I	CCWWGG	2 cut(s)	38, 766
Bst2UI	CCWGG	2 cut(s)	17, 841
Bst4CI	ACNGT	2 cut(s)	362, 653
Bst6I	CTCTTC	1 cut(s)	1122
BstDEI	CTNAG	4 cut(s)	120, 315, 606, 1124
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	4 cut(s)	34, 849, 1019, 1024
BstKTI	GATC	3 cut(s)	680, 916, 1024
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	3 cut(s)	677, 913, 1021
BstMWI	GCNNNNNNNGC	1 cut(s)	823
BstNI	CCWGG	2 cut(s)	17, 841
BstSCI	CCNGG	2 cut(s)	15, 839
BstSLI	GKGCMC	2 cut(s)	312, 603
BstV1I	GCAGC	2 cut(s)	421, 705
BstX2I	RGATCY	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	677
BsuRI	GGCC	3 cut(s)	310, 601, 826
BtgI	CCRYGG	1 cut(s)	38
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	4 cut(s)	34, 849, 1019, 1024
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	5 cut(s)	16, 367, 658, 785, 874
CaiI	CAGNNNCTG	2 cut(s)	366, 657
Cfr13I	GGNCC	6 cut(s)	19, 308, 309, 599, 600, 731
CseI	GACGC	2 cut(s)	823, 987
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	3 cut(s)	39, 748, 1161
CviJI	RGCY	9 cut(s)	310, 353, 448, 601, 644, 740, 779, 826, 875
CviKI_1	RGCY	9 cut(s)	310, 353, 448, 601, 644, 740, 779, 826, 875
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	4 cut(s)	120, 315, 606, 1124
DpnI	GATC	3 cut(s)	679, 915, 1023
DpnII	GATC	3 cut(s)	677, 913, 1021
DraI	TTTAAA	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	1122
EarI	CTCTTC	1 cut(s)	1122
Eco130I	CCWWGG	2 cut(s)	38, 766
Eco24I	GRGCYC	2 cut(s)	312, 603
Eco47I	GGWCC	2 cut(s)	19, 731
EcoO109I	RGGNCCY	2 cut(s)	309, 600
EcoRII	CCWGG	2 cut(s)	15, 839
EcoT14I	CCWWGG	2 cut(s)	38, 766
EcoT38I	GRGCYC	2 cut(s)	312, 603
ErhI	CCWWGG	2 cut(s)	38, 766
FaeI	CATG	3 cut(s)	42, 751, 1164
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	3 cut(s)	38, 747, 1160
FauNDI	CATATG	1 cut(s)	904
Fnu4HI	GCNGC	3 cut(s)	130, 435, 719
FokI	GGATG	4 cut(s)	21, 856, 1026, 1031
FriOI	GRGCYC	2 cut(s)	312, 603
Fsp4HI	GCNGC	3 cut(s)	130, 435, 719
FspBI	CTAG	1 cut(s)	1068
GluI	GCNGC	3 cut(s)	130, 435, 719
GsaI	CCCAGC	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	310, 601, 826
HgaI	GACGC	2 cut(s)	823, 987
Hin1II	CATG	3 cut(s)	42, 751, 1164
HindIII	AAGCTT	1 cut(s)	738
HinfI	GANTC	5 cut(s)	137, 339, 630, 1037, 1087
HphI	GGTGA	1 cut(s)	391
Hpy188I	TCNGA	8 cut(s)	185, 304, 316, 595, 607, 677, 1042, 1092
Hpy188III	TCNNGA	6 cut(s)	367, 658, 917, 1025, 1056, 1068
HpyAV	CCTTC	5 cut(s)	68, 99, 804, 843, 1069
HpyCH4III	ACNGT	2 cut(s)	362, 653
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	437, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	823
HpyF3I	CTNAG	4 cut(s)	120, 315, 606, 1124
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	42, 751, 1164
Kzo9I	GATC	3 cut(s)	677, 913, 1021
Lsp1109I	GCAGC	2 cut(s)	421, 705
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	1 cut(s)	1068
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	248, 539
MalI	GATC	3 cut(s)	679, 915, 1023
MboI	GATC	3 cut(s)	677, 913, 1021
MfeI	CAATTG	1 cut(s)	792
MflI	RGATCY	1 cut(s)	677
MhlI	GDGCHC	2 cut(s)	312, 603
MluCI	AATT	6 cut(s)	384, 415, 438, 792, 1004, 1101
MlyI	GAGTC	3 cut(s)	348, 639, 1096
MmeI	TCCRAC	4 cut(s)	316, 607, 668, 1070
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	2 cut(s)	473, 882
MspA1I	CMGCKG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	17, 841
MunI	CAATTG	1 cut(s)	792
MvaI	CCWGG	2 cut(s)	17, 841
MwoI	GCNNNNNNNGC	1 cut(s)	823
NcoI	CCATGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	3 cut(s)	677, 913, 1021
NlaIII	CATG	3 cut(s)	42, 751, 1164
NlaIV	GGNNCC	3 cut(s)	310, 601, 732
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	137, 1037
PflFI	GACNNNGTC	2 cut(s)	362, 653
PfoI	TCCNGGA	1 cut(s)	839
PkrI	GCNGC	3 cut(s)	131, 436, 720
PleI	GAGTC	3 cut(s)	347, 638, 1095
PpsI	GAGTC	3 cut(s)	347, 638, 1095
Psp6I	CCWGG	2 cut(s)	15, 839
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	2 cut(s)	15, 839
PspN4I	GGNNCC	3 cut(s)	310, 601, 732
PspOMI	GGGCCC	2 cut(s)	308, 599
PspPI	GGNCC	6 cut(s)	19, 308, 309, 599, 600, 731
PstNI	CAGNNNCTG	2 cut(s)	366, 657
PsuI	RGATCY	1 cut(s)	677
PsyI	GACNNNGTC	2 cut(s)	362, 653
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	473, 882
SatI	GCNGC	3 cut(s)	130, 435, 719
Sau3AI	GATC	3 cut(s)	677, 913, 1021
Sau96I	GGNCC	6 cut(s)	19, 308, 309, 599, 600, 731
SchI	GAGTC	3 cut(s)	348, 639, 1096
ScrFI	CCNGG	2 cut(s)	17, 841
SduI	GDGCHC	2 cut(s)	312, 603
SfaNI	GCATC	1 cut(s)	985
SinI	GGWCC	2 cut(s)	19, 731
Sse9I	AATT	6 cut(s)	384, 415, 438, 792, 1004, 1101
SsiI	CCGC	4 cut(s)	127, 130, 292, 583
SspMI	CTAG	1 cut(s)	1068
StyD4I	CCNGG	2 cut(s)	15, 839
StyI	CCWWGG	2 cut(s)	38, 766
TaaI	ACNGT	2 cut(s)	362, 653
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	1057
TasI	AATT	6 cut(s)	384, 415, 438, 792, 1004, 1101
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	137, 1037
Tru1I	TTAA	2 cut(s)	473, 882
Tru9I	TTAA	2 cut(s)	473, 882
TscAI	CASTG	5 cut(s)	16, 367, 658, 792, 874
TseI	GCWGC	2 cut(s)	434, 718
TspDTI	ATGAA	5 cut(s)	219, 225, 513, 924, 1149
TspGWI	ACGGA	2 cut(s)	213, 507
TspRI	CASTG	5 cut(s)	16, 367, 658, 792, 874
Tth111I	GACNNNGTC	2 cut(s)	362, 653
VpaK11BI	GGWCC	2 cut(s)	19, 731
XapI	RAATTY	1 cut(s)	415
XbaI	TCTAGA	1 cut(s)	1067
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.